BAC Information

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BAC

Clone NameB6Ng01-161I05
Chromosome6 (Build37)
Map Location 47,964,499 - 48,115,596
singlet/doubletdoublet
Overlap geneZfp777, Zfp746
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161I05.bB6Ng01-161I05.g
ACCDH954604DH954605
length1,1681,010
definitionDH954604|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I05, 5' end.DH954605|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,114,417 - 48,115,596)(47,964,499 - 47,965,515)
sequence
gaattccaggacagccagggctgtacagagaaaccctgtgtcaaaaaaaa
aaaaaaaaaaaaaaaagtcgcatccctacaggaccaaaacactaagtaaa
agcttgcattaatgagacacacccccccagctttatggaaaggaggtgca
tcactgaagacctaggttctgttactgctgtgtcctacactgctaagaga
actcacaggacacagaactcagtgaaactgagagatacttgctgtagaca
aaggctccaggaagatgaaaagtgagcaggttgtcacatgcagcaatttc
tctactgttcagtgcagagttcaggctgtccttctcctcaaatggcaccc
attgttttgttataagcacttataataatctaagcacttgaacacatgta
agttgcagatgatcataaaagatgacctgtgtgaaggatgctaaacctgg
gagttgtacttctgaactgtattctatctgtatccacaatgggttctgag
atttttctatcaaaaaagccatctgctctccaaaacataaaaagccatta
cctttccagtttgaagtgctcaatacaattcatcaaccccttctgcagaa
tttttctttcaaagcttaaataagacacagaattgccttcaactgccatg
caaactaaacacagcacagaatttggcctattcattgtcgtgtccctatt
taaccctctgcaaactcccttggacttatgaggcctctctcactgacctg
aagaaccttctgcctgggattagagacccagttctagtcctatcccaaga
agtgttagatataaaaagggagaattcacaagctaggaagagcttaaagt
acctgccccttgaagggctattgctgcttgcttgtcactgttgtacacac
agatgctaagaaacacaagaaaagatccagatcacagatgctggacagac
aggtgggatggggcagcctatctgcaaaggagtgagattcagagagtgaa
tggtctcggagagtgacatgcctagcatgtggcagcaaggtacaggcttg
agtcaggatgcatgaactgttaagcaatgccctgcagtgactaggccttg
gtacctgtgtaggccctcccatagaacacatcctgcactggctaccagga
gagctctggtgactcacc
gaattctccctagacccttatcttgggtattgcttctaaggcaaccaaaa
cccatcttaagcatgaagccacaggtactttgtagagagggtccatgaaa
acacgtcttaagcattgttgtactctctgggctgagtttatatctgaaaa
cttttcccaaaattgtgctatgcttagatatggcaacattaagtgagcgg
atatcggactctgagaagtcctggcccagcacaggttacctaagtcaggt
aaaccgagcttgattttccctcacggggaaaattttccatgtaaagcctg
taggggcctcccgtggaaaccaaagagtctgctgctgaagctggtgggtc
tacagccaagcactgctgagccatcatcagaagcataagaggcaggcaga
gagcagattcattaccaaggctgcaggtttctgtacctaaactgggtcct
ttttccctctaggaattgtggaaccaatatgaagcctgagtagtgagtcc
tttattattatccaagaataggagatgtgggagataaaccccataataaa
ttcttggtgtctaggaagctagagagtaaaggaaatgggggcaggtgggc
tcaaaggagaatggtagtgtgctttttgagaatgggagatttgccgggaa
ttttgacgactctttctctttcctacctcatccctattagtggttctttg
caaatatagctatggaaattgttgttatggcaaaggagggtgtgttcttt
agcatgcaaacaggatttatgatgaactcacagggttgactagtggtcat
tccgtcaaccatcttttaaatagtagttccttgatggctcacctaaggaa
agacctcctggcctacagcaccctgtcttcaaagattagaatggggcaaa
gtggaagctcagtttgggcacaaggcagcactcagactaccatccagaag
ggacctatctgtccaccttgaacttagacttctcaaatgtgagagaccgt
gggtgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48114417_48115596
seq2: B6Ng01-161I05.b_48_1215 (reverse)

seq1  GGTGAGTCA-CAGAGCATCCCTGGTGAGGCAGTGCAGGGATGTGGTGCTA  49
      ||||||||| ||||||   |||||| || ||||||| |||||| || || 
seq2  GGTGAGTCACCAGAGCTCTCCTGGT-AGCCAGTGCA-GGATGT-GTTCT-  46

seq1  ATGGGAGAGCCTACACAGGTACCAGGGCATAAGTCACTGGCAGGGCATTT  99
      ||||||| |||||||||||||||| ||| | ||||||| |||||||| ||
seq2  ATGGGAGGGCCTACACAGGTACCAAGGCCT-AGTCACT-GCAGGGCA-TT  93

seq1  GCTT-ACAGTTCATGCAATCCCTGACTCAAGGCTGTACCCTGCTGGCCAC  148
      |||| ||||||||||||   ||||||||||| ||||||| |||| |||||
seq2  GCTTAACAGTTCATGCA--TCCTGACTCAAGCCTGTACCTTGCT-GCCAC  140

seq1  ACTGCTAGCCATGTCACTCTCCGGAGACCATTCACTCTCTGATTCTCACT  198
      | |||||| ||||||||||||| ||||||||||||||||||| |||||| 
seq2  A-TGCTAGGCATGTCACTCTCC-GAGACCATTCACTCTCTGAATCTCAC-  187

seq1  TCCTTTGCAGGATAGGCTGCCCCATCCCACCTGTCTGTCCAGCATCTGTG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCA-GATAGGCTGCCCCATCCCACCTGTCTGTCCAGCATCTGTG  236

seq1  ATCTGGATCTTTTCTTGTGTTTC-TAGCATCTGTGTGTACAACAGTGACA  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTGGATCTTTTCTTGTGTTTCTTAGCATCTGTGTGTACAACAGTGACA  286

seq1  AGCAAGCAGCAATAGCCCTTCAAGGGGCAGGTACTTTTAAGCTCTTCCTA  347
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCAAGCAGCAATAGCCCTTCAAGGGGCAGGTAC-TTTAAGCTCTTCCTA  335

seq1  GCTTGTGAATTCTCCCTTTTTATATCTAACACTTCTTGGGATAGGACTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAATTCTCCCTTTTTATATCTAACACTTCTTGGGATAGGACTAG  385

seq1  AACTGGGTCTCTAATCCCAGGCAGAAGGTTCTTCAGGTCAGTGAGAGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCTCTAATCCCAGGCAGAAGGTTCTTCAGGTCAGTGAGAGAGG  435

seq1  CCTCATAAGTCCAAGGGAGTTTGCAGAGGGTTAAATAGGGACACGACAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAGTCCAAGGGAGTTTGCAGAGGGTTAAATAGGGACACGACAAT  485

seq1  GAATAGGCCAAATTCTGTGCTGTGTTTAGTTTGCATGGCAGTTGAAGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCCAAATTCTGTGCTGTGTTTAGTTTGCATGGCAGTTGAAGGCA  535

seq1  ATTCTGTGTCTTATTTAAGCTTTGAAAGAAAAATTCTGCAGAAGGGGTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTCTTATTTAAGCTTTGAAAGAAAAATTCTGCAGAAGGGGTTG  585

seq1  ATGAATTGTATTGAGCACTTCAAACTGGAAAGGTAATGGCTTTTTATGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTATTGAGCACTTCAAACTGGAAAGGTAATGGCTTTTTATGTT  635

seq1  TTGGAGAGCAGATGGCTTTTTTGATAGAAAAATCTCAGAACCCATTGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGCAGATGGCTTTTTTGATAGAAAAATCTCAGAACCCATTGTGG  685

seq1  ATACAGATAGAATACAGTTCAGAAGTACAACTCCCAGGTTTAGCATCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATAGAATACAGTTCAGAAGTACAACTCCCAGGTTTAGCATCCTT  735

seq1  CACACAGGTCATCTTTTATGATCATCTGCAACTTACATGTGTTCAAGTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGTCATCTTTTATGATCATCTGCAACTTACATGTGTTCAAGTGC  785

seq1  TTAGATTATTATAAGTGCTTATAACAAAACAATGGGTGCCATTTGAGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTATTATAAGTGCTTATAACAAAACAATGGGTGCCATTTGAGGAG  835

seq1  AAGGACAGCCTGAACTCTGCACTGAACAGTAGAGAAATTGCTGCATGTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGCCTGAACTCTGCACTGAACAGTAGAGAAATTGCTGCATGTGA  885

seq1  CAACCTGCTCACTTTTCATCTTCCTGGAGCCTTTGTCTACAGCAAGTATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCTCACTTTTCATCTTCCTGGAGCCTTTGTCTACAGCAAGTATC  935

seq1  TCTCAGTTTCACTGAGTTCTGTGTCCTGTGAGTTCTCTTAGCAGTGTAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTCACTGAGTTCTGTGTCCTGTGAGTTCTCTTAGCAGTGTAGG  985

seq1  ACACAGCAGTAACAGAACCTAGGTCTTCAGTGATGCACCTCCTTTCCATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGTAACAGAACCTAGGTCTTCAGTGATGCACCTCCTTTCCATA  1035

seq1  AAGCTGGGGGGGTGTGTCTCATTAATGCAAGCTTTTACTTAGTGTTTTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGGGGGTGTGTCTCATTAATGCAAGCTTTTACTTAGTGTTTTGG  1085

seq1  TCCTGTAGGGATGCGACTTTTTTTTTTTTTTTTTTTTTTTTGACACAGGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGGGATGCGACTTTTTTTTTTTTTTTTTTTTTTTTGACACAGGG  1135

seq1  TTTCTCTGTACAGCCCTGGCTGTCCTGGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTACAGCCCTGGCTGTCCTGGAATTC  1168

seq1: chr6_47964499_47965515
seq2: B6Ng01-161I05.g_72_1081

seq1  GAATTCTCCCTAGACCCTTATCTTGGGTATTGCTTCTAAGGCAACCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTAGACCCTTATCTTGGGTATTGCTTCTAAGGCAACCAAAA  50

seq1  CCCATCTTAAGCATGAAGCCACAGGTACTTTGTAGAGAGGGTCCATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTAAGCATGAAGCCACAGGTACTTTGTAGAGAGGGTCCATGAAA  100

seq1  ACACGTCTTAAGCATTGTTGTACTCTCTGGGCTGAGTTTATATCTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTCTTAAGCATTGTTGTACTCTCTGGGCTGAGTTTATATCTGAAAA  150

seq1  CTTTTCCCAAAATTGTGCTATGCTTAGATATGGCAACATTAAGTGAGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCAAAATTGTGCTATGCTTAGATATGGCAACATTAAGTGAGCGG  200

seq1  ATATCGGACTCTGAGAAGTCCTGGCCCAGCACAGGTTACCTAAGTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGGACTCTGAGAAGTCCTGGCCCAGCACAGGTTACCTAAGTCAGGT  250

seq1  AAACCGAGCTTGATTTTCCCTCACGGGGAAAATTTTCCATGTAAAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGAGCTTGATTTTCCCTCACGGGGAAAATTTTCCATGTAAAGCCTG  300

seq1  TAGGGGCCTCCCGTGGAAACCAAAGAGTCTGCTGCTGAAGCTGGTGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCCTCCCGTGGAAACCAAAGAGTCTGCTGCTGAAGCTGGTGGGTC  350

seq1  TACAGCCAAGCACTGCTGAGCCATCATCAGAAGCATAAGAGGCAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAAGCACTGCTGAGCCATCATCAGAAGCATAAGAGGCAGGCAGA  400

seq1  GAGCAGATTCATTACCAAGGCTGCAGGTTTCTGTACCTAAACTGGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTCATTACCAAGGCTGCAGGTTTCTGTACCTAAACTGGGTCCT  450

seq1  TTTTCCCTCTAGGAATTGTGGAACCAATATGAAGCCTGAGTAGTGAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCTAGGAATTGTGGAACCAATATGAAGCCTGAGTAGTGAGTCC  500

seq1  TTTATTATTATCCAAGAATAGGAGATGTGGGAGATAAACCCCATAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTATCCAAGAATAGGAGATGTGGGAGATAAACCCCATAATAAA  550

seq1  TTCTTGGTGTCTAGGAAGCTAGAGAGTAAAGGAAATGGGGGCAGGTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGTCTAGGAAGCTAGAGAGTAAAGGAAATGGGGGCAGGTGGGC  600

seq1  TCAAAGGAGAATGGTAGTGTGCTTTTTGAGAATGGGAGATTTGCCGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGAATGGTAGTGTGCTTTTTGAGAATGGGAGATTTGCCGGGAA  650

seq1  TTTTGACGACTCTTTCTCTTTCCTACCTCATCCCTATTAGTGGTTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACGACTCTTTCTCTTTCCTACCTCATCCCTATTAGTGGTTCTTTG  700

seq1  CAAATATAGCTATGGAAATTGTTGTTATGGCAAAGGATGGTGTGTTCTTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAATATAGCTATGGAAATTGTTGTTATGGCAAAGGAGGGTGTGTTCTTT  750

seq1  AGCATGCAAACAGGATTTATGATGAACTCACAGGG-TGACTAGTGGTCAT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCATGCAAACAGGATTTATGATGAACTCACAGGGTTGACTAGTGGTCAT  800

seq1  TCCGTCAACCATCTTTTAAATAGTAGTTCC-TGATGGCTCACCTAAGGAA  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCGTCAACCATCTTTTAAATAGTAGTTCCTTGATGGCTCACCTAAGGAA  850

seq1  AGA-CTTCTGGCCTACAGGCACCCTGTCTTCAAAGATAAGAATGGGGCAA  897
      ||| || |||||||||| ||||||||||||||||||| ||||||||||||
seq2  AGACCTCCTGGCCTACA-GCACCCTGTCTTCAAAGATTAGAATGGGGCAA  899

seq1  AGTGGAAGCTCAG-TTGGGCACAGAGGCAGCACTCAGACTAACACATCCA  946
      ||||||||||||| ||||||||| |||||||||||||||||   ||||||
seq2  AGTGGAAGCTCAGTTTGGGCACA-AGGCAGCACTCAGACTA--CCATCCA  946

seq1  GAAAGGACCTATCTGTCCCACATTGAACTTAGACTTTCTCCAAAATTGTG  996
      ||| |||||||||||| |||| |||||||||||| |||||   || ||||
seq2  GAAGGGACCTATCTGT-CCACCTTGAACTTAGAC-TTCTC---AAATGTG  991

seq1  AGAGAACCGGTGGGTGTGGTG  1017
      |||||  | ||||||||||||
seq2  AGAGA--CCGTGGGTGTGGTG  1010