BAC Information

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BAC

Clone NameB6Ng01-161J24
Chromosome6 (Build37)
Map Location 84,590,184 - 84,755,306
singlet/doubletdoublet
Overlap geneExoc6b
Upstream geneClec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneLOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161J24.bB6Ng01-161J24.g
ACCDH954689DH954690
length8851,031
definitionDH954689|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J24, 5' end.DH954690|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,590,184 - 84,591,060)(84,754,276 - 84,755,306)
sequence
gaattctcttggccgagtgggttgaactacagagttccacccaatggatg
aacttgcattgggctgaacactgtagcacagccctacatggaggtagtgt
ctgcatcctgtgcagacactgtcctcagctctttctgatgccagcacagc
tcctgtccatcctcctgtttcagttatatcacagatacttttgccgctca
gctgtgagcaatttgagggcatgtccatttttgtctttgcttgttagctg
tgtggtagggagtgaaggaactcagtgaggcctgctgacttgggactgag
agcaccacagaaggatggtgtcctgacccagctctgagtgcctggcagca
aacatcacctctggtgctaaccctgctttcccaaggttggttccaggagc
tggctcacgtagcgctggtctacaatctcttgtagtgcttcttcatctct
agcaggcaaataatgggtggaaaggctcagtcacaggagattggactgtt
tacagttggctgggccaagattagtgtgagcacaacatatgccaggttca
ttggaagttacatttcccttttgtttacacattgtagaggagaagaccag
aaggggggcggggggaggtgacctcctgttaaccctcgctgtctgctaga
ggccgctgccctcacctctgaatgaactttcagattatctcacacaagat
tcaccttgcgctgaacttgtgcgcctgctctgaggccccagtcacgtaga
tgtgatttaaacattacagagtggccataaattttacagaagtattatgt
ggctttgctttccttttcttctttgggaaaggaagagagcaatgtggttt
tggaaccaatggggggaagtttaaaaatgaagtcc
gaattcagaagttatgtcacgcttgcttgttacctagaaccctgttccca
cagctgtgtgaaccatctttgtctgcaaatgtttgttacatctgtctcag
ttcttattagcagaaagggttctgaactcttcttcaggttcctttagttt
ctttaggatgctgttttattttctccagccattttatgttccctgttagt
tttactggttatacttctgtagacaatgtttttctttcttgttactttta
tgtctttatatttctttctcatattctggataattctccagcactctctc
cctcttagcccgctctattgtatctgatccattggaatgctttattttct
ttattgtttatttggggtttttttttgtttgtttgtttcttttgttttta
atgtaagtgctcactctgaagcccaggccagcctggagcttctttgtagc
ccagacttttttcaaacctatactggtcttcctgtctcggccttggggta
gcttgaaccagcatcccagtgctgtcaccatttattttcagtatcagcaa
caatatctggaagctgccgtcttccttgccgtggttttattatttcacta
tgatgtatgtatcttttatgttaccatataaacatgtatttattgtccct
tttaaaaatgtttcttttttatctcaggtttctgtactccttattttctt
tgcaaagatatttttcccctcctaagcagttgtttattttaagcagattt
aatttttgattttttgctgatcttaatgggagcaacctcacaccccatgt
aactcccacttttagatgagcatcaccacagatactttaccctcaatggt
gggttctgtcccggtgtctcacagtctagaacagtctggtactcagatgt
agcttagggatttcctgtactgtatagccttcatgaattccaacaccaaa
ctgataattgcaatcaatttcctcttagtaagccaattttcctcctacca
cagctggtatgtagagaacaaagaaccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84590184_84591060
seq2: B6Ng01-161J24.b_46_930

seq1  GAATTCTCTTGGCCGAGTGGGTTGAACTACAGAGTTCCACCCAATGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGCCGAGTGGGTTGAACTACAGAGTTCCACCCAATGGATG  50

seq1  AACTTGCATTGGGCTGAACACTGTAGCACAGCCCTACATGGAGGTAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATTGGGCTGAACACTGTAGCACAGCCCTACATGGAGGTAGTGT  100

seq1  CTGCATCCTGTGCAGACACTGTCCTCAGCTCTTTCTGATGCCAGCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTGTGCAGACACTGTCCTCAGCTCTTTCTGATGCCAGCACAGC  150

seq1  TCCTGTCCATCCTCCTGTTTCAGTTATATCACAGATACTTTTGCCGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCATCCTCCTGTTTCAGTTATATCACAGATACTTTTGCCGCTCA  200

seq1  GCTGTGAGCAATTTGAGGGCATGTCCATTTTTGTCTTTGCTTGTTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGCAATTTGAGGGCATGTCCATTTTTGTCTTTGCTTGTTAGCTG  250

seq1  TGTGGTAGGGAGTGAAGGAACTCAGTGAGGCCTGCTGACTTGGGACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGGGAGTGAAGGAACTCAGTGAGGCCTGCTGACTTGGGACTGAG  300

seq1  AGCACCACAGAAGGATGGTGTCCTGACCCAGCTCTGAGTGCCTGGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACAGAAGGATGGTGTCCTGACCCAGCTCTGAGTGCCTGGCAGCA  350

seq1  AACATCACCTCTGGTGCTAACCCTGCTTTCCCAAGGTTGGTTCCAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCTCTGGTGCTAACCCTGCTTTCCCAAGGTTGGTTCCAGGAGC  400

seq1  TGGCTCACGTAGCGCTGGTCTACAATCTCTTGTAGTGCTTCTTCATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACGTAGCGCTGGTCTACAATCTCTTGTAGTGCTTCTTCATCTCT  450

seq1  AGCAGGCAAATAATGGGTGGAAAGGCTCAGTCACAGGAGATTGGACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAAATAATGGGTGGAAAGGCTCAGTCACAGGAGATTGGACTGTT  500

seq1  TACAGTTGGCTGGGCCAAGATTAGTGTGAGCACAACATATGCCAGGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGGCTGGGCCAAGATTAGTGTGAGCACAACATATGCCAGGTTCA  550

seq1  TTGGAAGTTACATTTCCCTTTTGTTTACACATTGTAGAGGAGAAGACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTACATTTCCCTTTTGTTTACACATTGTAGAGGAGAAGACCAG  600

seq1  AAGGGGGGCGGGGGGAGGTGACCTCCTGTTAA-CCTCGCTGTCTGCTAGA  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGGGGGCGGGGGGAGGTGACCTCCTGTTAACCCTCGCTGTCTGCTAGA  650

seq1  GGCCGCTGCCCTCACCTCTGAATGAACTTTCAGATTATCTCACACAAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCTGCCCTCACCTCTGAATGAACTTTCAGATTATCTCACACAAGAT  700

seq1  TCACCTTGCGCTGAACTTGTGCGCCTGCTCTGAAGGCCCCAGTCACGTAG  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACCTTGCGCTGAACTTGTGCGCCTGCTCTG-AGGCCCCAGTCACGTAG  749

seq1  ATGTGA-TTAAACATTACAGAGTGGCCATAAA-TTTACAGAAGTATTATT  797
      |||||| ||||||||||||||||||||||||| ||||||||||||||| |
seq2  ATGTGATTTAAACATTACAGAGTGGCCATAAATTTTACAGAAGTATTA-T  798

seq1  GTGGC-TTGCTTTCC-TTTCTTCTTTGGGAGAGGAAGAGAGCAA--TGGG  843
      ||||| ||||||||| |||||||||||||| |||||||||||||  ||| 
seq2  GTGGCTTTGCTTTCCTTTTCTTCTTTGGGAAAGGAAGAGAGCAATGTGGT  848

seq1  TTTGGAA-CAGTGGGGG--AGTTTAAAAAGGAAGTCC  877
      ||||||| || ||||||  |||||||||| |||||||
seq2  TTTGGAACCAATGGGGGGAAGTTTAAAAATGAAGTCC  885

seq1: chr6_84754276_84755306
seq2: B6Ng01-161J24.g_68_1098 (reverse)

seq1  ACATGGATCTTTGTCTCCTACATA-CAGCTGGTGGTA-GAGGAAAATTGG  48
      |||||| |||||||   ||||||| ||||| |||||| ||||||||||||
seq2  ACATGGTTCTTTGTTCTCTACATACCAGCT-GTGGTAGGAGGAAAATTGG  49

seq1  CTTACTAAGAGGAAATTGATTGCAAGTATCAGTTTGGTGTTGGAATTCAT  98
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTACTAAGAGGAAATTGATTGCAATTATCAGTTTGGTGTTGGAATTCAT  99

seq1  GATGGCTATACAGTACAGG-AATCCCTAAGCTACACTCTGAGTA-CAGAC  146
      || |||||||||||||||| ||||||||||||||| |||||||| |||||
seq2  GAAGGCTATACAGTACAGGAAATCCCTAAGCTACA-TCTGAGTACCAGAC  148

seq1  TGGTCCTAGACTGGTGAGACACCGGGACAGAA-CCAACACTGAGGGTAAA  195
      | || ||||||| ||||||||||||||||||| ||| || ||||||||||
seq2  T-GTTCTAGACT-GTGAGACACCGGGACAGAACCCACCATTGAGGGTAAA  196

seq1  GTATCTGTGGTGATGCTTCATCTGAGAAGTGGGAGTTTACATTGGGTGTG  245
      |||||||||||||||| |||||| | ||||||||| |||||| |||||||
seq2  GTATCTGTGGTGATGC-TCATCT-AAAAGTGGGAG-TTACATGGGGTGTG  243

seq1  AGGTTGCTCCCATTAAAGATCAGCAAAAAATCAAAAATTAAATCTGCTT-  294
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  AGGTTGCTCCCATT-AAGATCAGCAAAAAATCAAAAATTAAATCTGCTTA  292

seq1  AAATAAACAACTGCTTAGGAGGGGAAAAATATCTTTGCAAAGAAAATAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAACTGCTTAGGAGGGGAAAAATATCTTTGCAAAGAAAATAAG  342

seq1  GAGTACAGAAACCTGAGATTAAAAAGAAACATTTTT-AAAGGGACAATAA  393
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GAGTACAGAAACCTGAGATAAAAAAGAAACATTTTTAAAAGGGACAATAA  392

seq1  ATACATGTTTATATGGTAACATAAAAGATACATACATCATAGTGAAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTTATATGGTAACATAAAAGATACATACATCATAGTGAAATAA  442

seq1  T-AAACCACGGCAAGGAAGACGGCAGCTTCCAGATATTGTTGCTGATACT  492
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCACGGCAAGGAAGACGGCAGCTTCCAGATATTGTTGCTGATACT  492

seq1  GAAAATAAATGGTGACAGCACTGGGATGCTGGTTCAAGCTACCCCAAGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATGGTGACAGCACTGGGATGCTGGTTCAAGCTACCCCAAGGC  542

seq1  CGAGACAGGAAGACCAGTATAGGTTTGAAAAAAGTCTGGGCTACAAAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGAAGACCAGTATAGGTTTGAAAAAAGTCTGGGCTACAAAGAA  592

seq1  GCTCCAGGCTGGCCTGGGCTTCAGAGTGAGCACTTACATTAAAAACAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCTGGCCTGGGCTTCAGAGTGAGCACTTACATTAAAAACAAAA  642

seq1  GAAACAAACAAACAAAAAAAAACCCCAAATAAACAATAAAGAAAATAAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAAACAAAAAAAAACCCCAAATAAACAATAAAGAAAATAAAG  692

seq1  CATTCCAATGGATCAGATACAATAGAGCGGGCTAAGAGGGAGAGAGTGCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAATGGATCAGATACAATAGAGCGGGCTAAGAGGGAGAGAGTGCT  742

seq1  GGAGAATTATCCAGAATATGAGAAAGAAATATAAAGACATAAAAGTAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTATCCAGAATATGAGAAAGAAATATAAAGACATAAAAGTAACA  792

seq1  AGAAAGAAAAACATTGTCTACAGAAGTATAACCAGTAAAACTAACAGGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAACATTGTCTACAGAAGTATAACCAGTAAAACTAACAGGGA  842

seq1  ACATAAAATGGCTGGAGAAAATAAAACAGCATCCTAAAGAAACTAAAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATGGCTGGAGAAAATAAAACAGCATCCTAAAGAAACTAAAGGA  892

seq1  ACCTGAAGAAGAGTTCAGAACCCTTTCTGCTAATAAGAACTGAGACAGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGAAGAGTTCAGAACCCTTTCTGCTAATAAGAACTGAGACAGAT  942

seq1  GTAACAAACATTTGCAGACAAAGATGGTTCACACAGCTGTGGGAACAGGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAACATTTGCAGACAAAGATGGTTCACACAGCTGTGGGAACAGGG  992

seq1  TTCTAGGTAACAAGCAAGCGTGACATAACTTCTGAATTC  1031
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTAACAAGCAAGCGTGACATAACTTCTGAATTC  1031