BAC Information

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BAC

Clone NameB6Ng01-161M19
Chromosome6 (Build37)
Map Location 25,259,739 - 25,306,290
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M19.bB6Ng01-161M19.g
ACCDH954813DH954814
length1,171335
definitionDH954813|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M19, 5' end.DH954814|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,305,115 - 25,306,290)(25,259,739 - 25,260,073)
sequence
gaattcttagcttctcacattaactcttcccattcaaaagccactttctg
ctctcccacaaatgtattgtaaaatatatatcagcccctgcctgatagga
ttgatatggcttcccttttcttagcatactctgcacacttcattacctct
gagaccttgctgagaatgtgaccctgggtggctgcttttgcctttgctgc
cttggtgaactgaaagctaagcaagctgagagctagattaagtgacatgg
aaatttaacaagatagttggtgctctgctgctgaatgaaaatgccacggt
acaatcttatgcttcgttcttatgctgtagagatctatcatatattagac
cccaagagaaagttcacaaaaccacagaatttttgtgcagcaatgatttc
tttcccttactgtttactgattggaaactcggtcttagattaatacagct
cattgtcagagtaggatgtgaaaaattttgctctctctgtctctagtggg
ggacagagtagcttgcttattttctgagaccaggaaatagtactctaaat
tttaaagcaaactgggctactgtaaattgaaaatcagatttttctctcat
taatctggatgtgtcaggattcttctttttctttttcttttttctttttt
ttttcatttgtagtctaattactctatatagaaaagaatgctctttaaga
ttaatcctctatgagccaataccatagtaattttagaagtagcagaaatt
agcacaaatggaagttgtcatacttggtgttttaaatattcaggacaaag
tctggtaatttagcttacctacactccttgtttttgacatggatattttt
ctatctgaatgagtagtttgcttctcaagaaagaaatgggtagtggaaaa
gaggtaatatcggtgccctactctatctcatgactctctgtaatcacata
accactaaaaaaaatggcatgctgtcattagccaaataattacatgataa
tcttatacaactttcatacttgaagaatttgagcatctttattcatctgt
ggttatgtctctataaaaatagactgtataaaggggtgtggaatagaatc
tttctaattgctctgatacatcactcatgaacaaggcaaatgaaagataa
ggggtctaatttcggttccag
cattccttctttacaaatttaaccaccttttgtcctcataaagagctgta
tctagaacaaaggccttgtttccccaacaacattatttcatttcttgtat
taataattgtaaaatctcttgcttcaaaacatcagctttgtttaaggact
acagactgtctctttagtatctcagtgatacctaggatgactccgcctta
tactttctaagttttgtgtttacataactgttctttacatccatggttag
aagtagaaaagaaagtttcatagcaactcattcttagaattgtgtgtgtg
catgtgtgtgtgtttgtgtgtgtgtgtgtggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25305115_25306290
seq2: B6Ng01-161M19.b_44_1214 (reverse)

seq1  CTGGAACCAGAAATAGACCCCCTTTTCTTTCATTTGCCTTGGTCATGA-T  49
      ||||||||  || |||| |||||| |||||||||||||||| |||||| |
seq2  CTGGAACCGAAATTAGA-CCCCTTATCTTTCATTTGCCTTGTTCATGAGT  49

seq1  GTAGTATCAGAGCAA-TAGAAAAGATCTAATCCA-ACCCTCTATTACAGT  97
      |  |||||||||||| ||||||   |||| |||| ||||  |  ||||||
seq2  GATGTATCAGAGCAATTAGAAAGATTCTATTCCACACCCCTTTATACAGT  99

seq1  CTA-TTTTATAGAGACATAA-CACAGATGAATAAAAGATGCTCAAAATTC  145
      ||| |||||||||||||||| ||||||||||| |||||||||| ||||||
seq2  CTATTTTTATAGAGACATAACCACAGATGAAT-AAAGATGCTC-AAATTC  147

seq1  TTCAAGTATGAAAGTTGTATAAGAATTATCATGTAATTATTTGGCTAATG  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TTCAAGTATGAAAGTTGTATAAG-ATTATCATGTAATTATTTGGCTAAT-  195

seq1  GACAGCAATGCCATTTTTTTTAGTGGTTATGTGATTACAGAGGAGTCATT  245
      |||||| |||||||||||||||||||||||||||||||||| |||||| |
seq2  GACAGC-ATGCCATTTTTTTTAGTGGTTATGTGATTACAGA-GAGTCA-T  242

seq1  GAGATAGAGGTAGGGCACCGATATTACCTCTTTTCCACTACCCATTTTCT  295
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  GAGATAGA-GTAGGGCACCGATATTACCTCTTTTCCACTACCCA-TTTCT  290

seq1  TTCTTGAGAAGCAAACTACTCATTCAGATAGAAAAATATCCATGTCAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAAGCAAACTACTCATTCAGATAGAAAAATATCCATGTCAAAA  340

seq1  ACAAGGAGTGTAGGTAAGCTAAATTACCAGACTTTGTCCTGAATATTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGTGTAGGTAAGCTAAATTACCAGACTTTGTCCTGAATATTTAA  390

seq1  AACACCAAGTATGACAACTTCCATTTGTGCTAATTTCTGCTACTTCTAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGTATGACAACTTCCATTTGTGCTAATTTCTGCTACTTCTAAA  440

seq1  ATTACTATGGTATTGGCTCATAGAGGATTAATCTTAAAGAGCATTCTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGGTATTGGCTCATAGAGGATTAATCTTAAAGAGCATTCTTTT  490

seq1  CTATATAGAGTAATTAGACTACAAATGAAAAAAAAAAGAAAAAAGAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGAGTAATTAGACTACAAATGAAAAAAAAAAGAAAAAAGAAAAA  540

seq1  GAAAAAGAAGAATCCTGACACATCCAGATTAATGAGAGAAAAATCTGATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAGAATCCTGACACATCCAGATTAATGAGAGAAAAATCTGATT  590

seq1  TTCAATTTACAGTAGCCCAGTTTGCTTTAAAATTTAGAGTACTATTTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTACAGTAGCCCAGTTTGCTTTAAAATTTAGAGTACTATTTCCT  640

seq1  GGTCTCAGAAAATAAGCAAGCTACTCTGTCCCCCACTAGAGACAGAGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGAAAATAAGCAAGCTACTCTGTCCCCCACTAGAGACAGAGAGA  690

seq1  GCAAAATTTTTCACATCCTACTCTGACAATGAGCTGTATTAATCTAAGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTTTCACATCCTACTCTGACAATGAGCTGTATTAATCTAAGAC  740

seq1  CGAGTTTCCAATCAGTAAACAGTAAGGGAAAGAAATCATTGCTGCACAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCCAATCAGTAAACAGTAAGGGAAAGAAATCATTGCTGCACAAA  790

seq1  AATTCTGTGGTTTTGTGAACTTTCTCTTGGGGTCTAATATATGATAGATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGGTTTTGTGAACTTTCTCTTGGGGTCTAATATATGATAGATC  840

seq1  TCTACAGCATAAGAACGAAGCATAAGATTGTACCGTGGCATTTTCATTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGCATAAGAACGAAGCATAAGATTGTACCGTGGCATTTTCATTCA  890

seq1  GCAGCAGAGCACCAACTATCTTGTTAAATTTCCATGTCACTTAATCTAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGCACCAACTATCTTGTTAAATTTCCATGTCACTTAATCTAGC  940

seq1  TCTCAGCTTGCTTAGCTTTCAGTTCACCAAGGCAGCAAAGGCAAAAGCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTGCTTAGCTTTCAGTTCACCAAGGCAGCAAAGGCAAAAGCAG  990

seq1  CCACCCAGGGTCACATTCTCAGCAAGGTCTCAGAGGTAATGAAGTGTGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGGGTCACATTCTCAGCAAGGTCTCAGAGGTAATGAAGTGTGCA  1040

seq1  GAGTATGCTAAGAAAAGGGAAGCCATATCAATCCTATCAGGCAGGGGCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGCTAAGAAAAGGGAAGCCATATCAATCCTATCAGGCAGGGGCTG  1090

seq1  ATATATATTTTACAATACATTTGTGGGAGAGCAGAAAGTGGCTTTTGAAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTTACAATACATTTGTGGGAGAGCAGAAAGTGGCTTTTGAAT  1140

seq1  GGGAAGAGTTAATGTGAGAAGCTAAGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  GGGAAGAGTTAATGTGAGAAGCTAAGAATTC  1171

seq1: chr6_25259739_25260073
seq2: B6Ng01-161M19.g_72_406

seq1  CATTCCTTCTTTACAAATTTAACCACCTTTTGTCCTCATAAAGAGCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCTTTACAAATTTAACCACCTTTTGTCCTCATAAAGAGCTGTA  50

seq1  TCTAGAACAAAGGCCTTGTTTCCCCAACAACATTATTTCATTTCTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACAAAGGCCTTGTTTCCCCAACAACATTATTTCATTTCTTGTAT  100

seq1  TAATAATTGTAAAATCTCTTGCTTCAAAACATCAGCTTTGTTTAAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGTAAAATCTCTTGCTTCAAAACATCAGCTTTGTTTAAGGACT  150

seq1  ACAGACTGTCTCTTTAGTATCTCAGTGATACCTAGGATGACTCCGCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTCTCTTTAGTATCTCAGTGATACCTAGGATGACTCCGCCTTA  200

seq1  TACTTTCTAAGTTTTGTGTTTACATAACTGTTCTTTACATCCATGGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTAAGTTTTGTGTTTACATAACTGTTCTTTACATCCATGGTTAG  250

seq1  AAGTAGAAAAGAAAGTTTCATAGCAACTCATTCTTAGAATTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAAGAAAGTTTCATAGCAACTCATTCTTAGAATTGTGTGTGTG  300

seq1  CATGTGTGTGTGTTTGTGTGTGTGTGTGTGGAGGG  335
      |||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTGTTTGTGTGTGTGTGTGTGGAGGG  335