BAC Information

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BAC

Clone NameB6Ng01-162N02
Chromosome6 (Build37)
Map Location 147,430,445 - 147,431,557
singlet/doubletsinglet
Overlap geneCcdc91
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N02.bB6Ng01-162N02.g
ACCDH955559DH955560
length8361,116
definitionDH955559|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N02, 5' end.DH955560|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggatcattaaccagaatacaaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaa
tactactcagctattaaaaaaaatgaatttatgaaattcctaggcaaatg
gatggacctggagggtatcatcctgagtgaagtaacccaatcacaaagga
actcgcacaatatgtactcactgataagtggttattagcccagaaactta
gcatacccaagatataagatacaacttgccaaacgcatgaaattcaagaa
gaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaaca
aaacacccatagaaggagttacagagacaaaatttggagctgtgacgaaa
ggatggaccatctagtgattgccatatccagggatccatcccataatcag
cttccaaatgctgacaccattgcatacactagcaagattttgctgaaagg
acccagatagagctctctcttgtgagactatgccggggcctagcaaacac
agaagtggatgatcacagtcagctattggatgggtcacacggccccttat
ggaggagctagagaaattacccaaggagctaaagggaactgcaaccctat
aggtggaacaacaatatgaactaaccagtaccccagagctcttgtcttta
gctgcatatgtatcaaaagatggcctagtcggtcatcactgcaaagagag
gcccattggacttgcaaactttatatgccccagtacaggggaacgccagg
gccaaaaaggggcagtgggtgggtaggggttttggg
gaattcctgtctatagacccttgatatgatgggtctgtccagtgagcttc
tctgtaccttttgtgtggtttagtctgtatcatctttataactgaggaag
attgaatggtttgcagatgtaataaagagataggctttcatttcacattg
gcttgtgctgacattcatttccttatttatagaactccttggaagcaggg
ccataagctgagagttccacatccttgttaggtaggtccagggtgtgact
ttctggttccttcagtcatgtgtagtttggggctaggtttttacttgttg
gttactatggcaatgctggtatagttatttaaggttcagtataaaatata
aaacaccaactgaagatttacacacaatttgaagaatttaggaaggaaag
gaacttgagcaaataaaaatgaatgtccttcctgtctcccagaaagtaac
attgcttgagtttaattaaattaattgactcagtagagaagcaaggccag
gtggcactcctataggacactgctgaccttatagcacacgaacagcacta
tgggagtacctggcttctccgtgggaaagcttggtttgccaaggtgtcac
tgtgatgaagaaaaaccatgcccagctactgcccaaaagggttttgagtc
gccagagttaaggcatgaaggcatgtttctgaaaaggactttttaatgta
acttgagagaattgtgttctactggatgagtttagtttacatatgataga
agctttattagaattggtgctcaattacttactaggtgtggaggtaaaaa
attataggtgatatatgttaaagtcagaatcacatgaaaagtatgtgctg
agaattctggtatttttaattcaaggaaaatgaaaattagtggttagaat
aagttttatatcatcttggaaaatgtgagcaggcaagtactttatgtgtt
tctcttgttgacaagtcttgtttttctttttaagagacactgtttgcagg
tcagacctttgataggtgcacaaagtaagatctgtgaacttcctcagcct
gaaaattagaagccagatccgagagtgtggggggatgctatagctgaaat
ctgtcaaggtctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147430445_147431557
seq2: B6Ng01-162N02.g_68_1183

seq1  GAATTCCTGTCTATAGACCCTTGATATGATGGGTCTGTCCAGTGAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTATAGACCCTTGATATGATGGGTCTGTCCAGTGAGCTTC  50

seq1  TCTGTACCTTTTGTGTGGTTTAGTCTGTATCATCTTTATAACTGAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCTTTTGTGTGGTTTAGTCTGTATCATCTTTATAACTGAGGAAG  100

seq1  ATTGAATGGTTTGCAGATGTAATAAAGAGATAGGCTTTCATTTCACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGGTTTGCAGATGTAATAAAGAGATAGGCTTTCATTTCACATTG  150

seq1  GCTTGTGCTGACATTCATTTCCTTATTTATAGAACTCCTTGGAAGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTGACATTCATTTCCTTATTTATAGAACTCCTTGGAAGCAGGG  200

seq1  CCATAAGCTGAGAGTTCCACATCCTTGTTAGGTAGGTCCAGGGTGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTGAGAGTTCCACATCCTTGTTAGGTAGGTCCAGGGTGTGACT  250

seq1  TTCTGGTTCCTTCAGTCATGTGTAGTTTGGGGCTAGGTTTTTACTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCCTTCAGTCATGTGTAGTTTGGGGCTAGGTTTTTACTTGTTG  300

seq1  GTTACTATGGCAATGCTGGTATAGTTATTTAAGGTTCAGTATAAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATGGCAATGCTGGTATAGTTATTTAAGGTTCAGTATAAAATATA  350

seq1  AAACACCAACTGAAGATTTACACACAATTTGAAGAATTTAGGAAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAACTGAAGATTTACACACAATTTGAAGAATTTAGGAAGGAAAG  400

seq1  GAACTTGAGCAAATAAAAATGAATGTCCTTCCTGTCTCCCAGAAAGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAGCAAATAAAAATGAATGTCCTTCCTGTCTCCCAGAAAGTAAC  450

seq1  ATTGCTTGAGTTTAATTAAATTAATTGACTCAGTAGAGAAGCAAGGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGAGTTTAATTAAATTAATTGACTCAGTAGAGAAGCAAGGCCAG  500

seq1  GTGGCACTCCTATAGGACACTGCTGACCTTATAGCACACGAACAGCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTCCTATAGGACACTGCTGACCTTATAGCACACGAACAGCACTA  550

seq1  TGGGAGTACCTGGCTTCTCCGTGGGAAAGCTTGGTTTGCCAAGGTGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTACCTGGCTTCTCCGTGGGAAAGCTTGGTTTGCCAAGGTGTCAC  600

seq1  TGTGATGAAGAAAAACCATGCCCAGCTACTGCCCAAAAGGGTTTTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAAGAAAAACCATGCCCAGCTACTGCCCAAAAGGGTTTTGAGTC  650

seq1  GCCAGAGTTAAGGCATGAAGGCATGTTTCTGAAAAGGACTTTTTAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTTAAGGCATGAAGGCATGTTTCTGAAAAGGACTTTTTAATGTA  700

seq1  ACTTGAGAGAATTGTGTTCTACTGGATGAGTTTAGTTTACATATGATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGAATTGTGTTCTACTGGATGAGTTTAGTTTACATATGATAGA  750

seq1  AGCTTTATTAGAATTGGTGCTCAATTACTTACTAGGTGTGGAGGTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTAGAATTGGTGCTCAATTACTTACTAGGTGTGGAGGTAAAAA  800

seq1  ATTATAGGTGATATATGTTAAAGTCAGAATCACATGAAAAGTATGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTGATATATGTTAAAGTCAGAATCACATGAAAAGTATGTGCTG  850

seq1  AGAATTCTGGTATTTTTAATTCAAGGGAAATGAAAATTAGTGGTTAGAAT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAATTCTGGTATTTTTAATTCAAGGAAAATGAAAATTAGTGGTTAGAAT  900

seq1  AAGTTTTATATCATCTTGGAAAAATGTGAGCAGGCAAGTACTTTATGTGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTTTTATATCATCTTGG-AAAATGTGAGCAGGCAAGTACTTTATGTGT  949

seq1  TTCTCTTGGTGAACAAGTCT--GTTTTCTTTTAAAGAGACACTGTTTGCA  998
      |||||||| || ||||||||   ||||||||| |||||||||||||||||
seq2  TTCTCTTGTTG-ACAAGTCTTGTTTTTCTTTTTAAGAGACACTGTTTGCA  998

seq1  GGTCAGACCTTTGATAGGTGCACAAAGTAGGATCTGTGAACT--CTCAGT  1046
      ||||||||||||||||||||||||||||| ||||||||||||  ||||| 
seq2  GGTCAGACCTTTGATAGGTGCACAAAGTAAGATCTGTGAACTTCCTCAGC  1048

seq1  CTGAAAATTAAGAAGCCAGAAGCGAGAGGTGT-GGGGGATGC-ATAGCTG  1094
      ||||||||| ||||||||||  ||||| |||| ||||||||| |||||||
seq2  CTGAAAATT-AGAAGCCAGATCCGAGA-GTGTGGGGGGATGCTATAGCTG  1096

seq1  AGATCTG-CAGGGTCTGTGG  1113
      | ||||| || |||||||||
seq2  AAATCTGTCAAGGTCTGTGG  1116