BAC Information

Click to search

BAC

Clone NameB6Ng01-163E06
Chromosome6 (Build37)
Map Location 148,991,077 - 149,141,977
singlet/doubletdoublet
Overlap geneD030011O10Rik, 4833442J19Rik, C730024G19Rik
Upstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138
Downstream gene2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E06.bB6Ng01-163E06.g
ACCDH955897DH955898
length1,1441,095
definitionDH955897|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E06, 5' end.DH955898|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,991,077 - 148,992,232)(149,140,895 - 149,141,977)
sequence
gaattcctgttttagtcactgtgctggtttgcttttcattctttcactct
tcagagtggataccgtgtatcagagccaaaagagagatggggcagttctg
acacagatggggggcagttcaaacataagatgctttgcttagtactcacc
agttacttcctggcatatttaatttttccatttcagtactttaggagact
tttaataaaaccttctttatagaatccactttttaaatttaggtgctttc
actgtttaaatgtacttatgtaagtccaaatacccagacagactcatagt
aatctctagaaatcagttcaccttgttaagtgctatttcacagatgaaca
tcaaatttactttttataggacagatatagccttgccctcatctggcctt
tgattttcagcttcttgtattctgtaaaatttaaaatcaactagaagtgg
gcttgcaagcctactatgccttgtatgtttcctttgtgaaaagatgatca
caaccttctggaacccagcacgtacctttcattttcttaggggttataca
gaaagaattccacttctagtatgaaactacttagagagtaaaaaagaact
agatactaggatatgaacttaaatcggattttgaactgctccaaagatag
atcatgaatgtataagttttagttcttaaggtggagaaaaaaatataata
aaattaagcaaaaatgaggacaggttgtagagcagaaatatatttgaaaa
atggtttcttaatattaaagaattttaatcaagcattaagtataccagta
aatcttgatgtacatagtatattatcctccataagaaaaaagatctggtg
aaatcagaaataatctttgatactacacaaacgtttagtaaaaaccttat
ttgtcagatgctccacaattaaacatttagcatcttggagtgtaatgact
cctttgggagttcttctatggcacgtccaacagcagacttatgtttggtc
agtaacagaggcagaggactcactgcattcccgtggagacttcctgttga
tctctagtgcttgttctgttgagaccttgggcacacaaacacctggcaaa
tgcagcaaacttgatagagcttcacaggacaataaagcctgcta
gaattcactcctctagggactagttcctttttttttttttttttttaaag
acttatttattatatgtaagtacactgtagctgtcctcagatactccaga
agagggcatcagatttcattatggatggttgtgagccaccatgtggttgc
tgggatttgaacttgggaccttcggaagaacagtcggcgctcttaaccac
tgagccatctcgccagcccctaggtactagttctaatcatgcttttactt
gtctaatggaagtgtggaccactgaagcctcagcacccaacccagtcctg
tggtctcaatatttaataaaatggtgttagtatgtggttgtgccctaaaa
tcaaacttcactatcacaaaaacaaaaagtgtgtactgaggagcatattg
aagagaaggctgtaattggttgagagagccccaacttgtcttagaacttc
ccacagggccttacaaaaggtccctgagtccccctccatgcccagccaat
taatgtaaaggtcaccagaaccaccaatcattacgtgcctagttactgtt
gttataatctgcactcaaaaactatataaaagacttatgaacgaaaaaaa
ggggtcacctttcctctgggtgcaggaccaccccagcacactagaaaaat
aaacctcttgttttttcatcaaactttgttctccagtctcatttgggggg
tctcccagtagctaaggctcactttgagttttagcatggtctcaacattt
aagttatttagaaaggaagtttagacatagaaccaataaattactctgaa
aaaaaaaaaagcatttttggtactatgaaaaatagcattttaaagccaca
aggttttcttccgcaaacccattaaagaaaagattcttaaaaccaggcag
aagggtggcacacttctttattcccagcactcgggaggcaagaagcatgg
cgaatttctgagttcgaggcctgcctcctctccgaagtgagtgccagact
gctgaaagaccccacgtgagggactccccccacgttctgctcaggagagg
cgacctcccccaattcctctcaagaagacggtcttggtgaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_148991077_148992232
seq2: B6Ng01-163E06.b_45_1188

seq1  GAATTCCTGTTTTAGTCACTGTGCTGGTTTGCTTTTCATTCTTTCACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTTAGTCACTGTGCTGGTTTGCTTTTCATTCTTTCACTCT  50

seq1  TCAGAGTGGATACCGTGTATCAGAGCCAAAAGAGAGATGGGGCAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGGATACCGTGTATCAGAGCCAAAAGAGAGATGGGGCAGTTCTG  100

seq1  ACACAGATGGGGGGCAGTTCAAACATAAGATGCTTTGCTTAGTACTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGGGGGGCAGTTCAAACATAAGATGCTTTGCTTAGTACTCACC  150

seq1  AGTTACTTCCTGGCATATTTAATTTTTCCATTTCAGTACTTTAGGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCCTGGCATATTTAATTTTTCCATTTCAGTACTTTAGGAGACT  200

seq1  TTTAATAAAACCTTCTTTATAGAATCCACTTTTTAAATTTAGGTGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAACCTTCTTTATAGAATCCACTTTTTAAATTTAGGTGCTTTC  250

seq1  ACTGTTTAAATGTACTTATGTAAGTCCAAATACCCAGACAGACTCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAAATGTACTTATGTAAGTCCAAATACCCAGACAGACTCATAGT  300

seq1  AATCTCTAGAAATCAGTTCACCTTGTTAAGTGCTATTTCACAGATGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAGAAATCAGTTCACCTTGTTAAGTGCTATTTCACAGATGAACA  350

seq1  TCAAATTTACTTTTTATAGGACAGATATAGCCTTGCCCTCATCTGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTACTTTTTATAGGACAGATATAGCCTTGCCCTCATCTGGCCTT  400

seq1  TGATTTTCAGCTTCTTGTATTCTGTAAAATTTAAAATCAACTAGAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAGCTTCTTGTATTCTGTAAAATTTAAAATCAACTAGAAGTGG  450

seq1  GCTTGCAAGCCTACTATGCCTTGTATGTTTCCTTTGTGAAAAGATGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAAGCCTACTATGCCTTGTATGTTTCCTTTGTGAAAAGATGATCA  500

seq1  CAACCTTCTGGAACCCAGCACGTACCTTTCATTTTCTTAGGGGTTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCTGGAACCCAGCACGTACCTTTCATTTTCTTAGGGGTTATACA  550

seq1  GAAAGAATTCCACTTCTAGTATGAAACTACTTAGAGAGTAAAAAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTCCACTTCTAGTATGAAACTACTTAGAGAGTAAAAAAGAACT  600

seq1  AGATACTAGGATATGAACTTAAATCGGATTTTGAACTGCTCCAAAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAGGATATGAACTTAAATCGGATTTTGAACTGCTCCAAAGATAG  650

seq1  ATCATGAATGTATAAG-TTTAGTTCTTAAGGTGGAGAAAAAAATATAATA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCATGAATGTATAAGTTTTAGTTCTTAAGGTGGAGAAAAAAATATAATA  700

seq1  AAATTAAGCAAAAATGAGGACAGGTTGTAGAGCAGAAATATATTTGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGCAAAAATGAGGACAGGTTGTAGAGCAGAAATATATTTGAAAA  750

seq1  ATGGTTTCTTAATATTAAAGAAATTTAATCAAGCATTAAGTATACCAGTA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGTTTCTTAATATTAAAGAATTTTAATCAAGCATTAAGTATACCAGTA  800

seq1  AATCTTGATGTACATAGTATATTATCCTCCATAAGAAAAAAGATCTGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGATGTACATAGTATATTATCCTCCATAAGAAAAAAGATCTGGTG  850

seq1  AAATCAGAAATAATCTTTGATACTACACAAACGTTTAGTAAAAACC-TAT  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATCAGAAATAATCTTTGATACTACACAAACGTTTAGTAAAAACCTTAT  900

seq1  TTGTCAGATGCTCCACAATTAAACATTTAGCATCTTGGAGTGTAATGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATGCTCCACAATTAAACATTTAGCATCTTGGAGTGTAATGACT  950

seq1  CCTTTGGGAGTTCTTCTATGGCACGTTCCAACAGCAGACTTATGTTTGTT  998
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  CCTTTGGGAGTTCTTCTATGGCACG-TCCAACAGCAGACTTATGTTTGGT  999

seq1  CAGTAACAGAGGCAGAGGACTCAACTGCATCCCCGTGGAAGACTTCCTGT  1048
      |||||||||||||||||||||| ||||||| ||||||| |||||||||||
seq2  CAGTAACAGAGGCAGAGGACTC-ACTGCATTCCCGTGG-AGACTTCCTGT  1047

seq1  GTATCTCTAGTGCTTGTGTCTGTTGGAGAAACCTGGGGCACACAAACAAC  1098
        ||||||||||||||| ||||||   || |||| |||||||||   |||
seq2  TGATCTCTAGTGCTTGT-TCTGTT---GAGACCTTGGGCACACA---AAC  1090

seq1  ACTGGGCAGAATGCAGCAAACCTTGAGAGACGCTTCCACAGGACAATAAA  1148
      ||  |||| ||||||||||| ||||| ||| |||| ||||||||||||||
seq2  ACCTGGCA-AATGCAGCAAA-CTTGATAGA-GCTT-CACAGGACAATAAA  1136

seq1  AGCTGCTA  1156
        ||||||
seq2  GCCTGCTA  1144

seq1: chr6_149140895_149141977
seq2: B6Ng01-163E06.g_70_1164 (reverse)

seq1  AATTTTCATCAAGACCG-CTTCTTGTGAGTGATTTGGGG-TGTCGCCTCT  48
      |||||||| |||||||| ||||||| |||  ||| ||||  |||||||||
seq2  AATTTTCACCAAGACCGTCTTCTTGAGAGGAATTGGGGGAGGTCGCCTCT  50

seq1  CCTGAGTCAGAACGT-GGGGGAGT-CCTCACGTTGTGGGTCTTTCAGCTG  96
      |||||| |||||||| |||||||| ||||||||   |||||||||||| |
seq2  CCTGAG-CAGAACGTGGGGGGAGTCCCTCACGT--GGGGTCTTTCAGCAG  97

seq1  TCCTGGAACTCACTCTGTAGATGAGGCTGGCCTCGAACTCAGAAATTCGC  146
      | |||| |||||||  | ||| ||||| ||||||||||||||||||||||
seq2  T-CTGGCACTCACTTCGGAGAGGAGGCAGGCCTCGAACTCAGAAATTCGC  146

seq1  C-TGCTTC-TGCCTCCCGAGTGCTGGG-ATTAAGGAGTGTGCCACC--TC  191
      | |||||| |||||||||||||||||| || ||| |||||||||||  ||
seq2  CATGCTTCTTGCCTCCCGAGTGCTGGGAATAAAGAAGTGTGCCACCCTTC  196

seq1  TGCCTGGTTTTAAGATTC-TTTCTTT-ATGGGTTTGCTGAAGAAAA-CTT  238
      ||||||||||||||| || ||||||| |||||||||| |||||||| |||
seq2  TGCCTGGTTTTAAGAATCTTTTCTTTAATGGGTTTGCGGAAGAAAACCTT  246

seq1  GTGGCTTTTAAATGCTATTTTTCATAGTAC--AAAATGC-TTTTTTTTTT  285
      |||||||| |||||||||||||||||||||  ||||||| ||||||||||
seq2  GTGGCTTTAAAATGCTATTTTTCATAGTACCAAAAATGCTTTTTTTTTTT  296

seq1  TCAGAGTAATTTATTGGTTCTATGTCTTAACTTCCTTTCT-AATGACTTA  334
      ||||||||||||||||||||||||||| |||||||||||| ||| |||||
seq2  TCAGAGTAATTTATTGGTTCTATGTCTAAACTTCCTTTCTAAATAACTTA  346

seq1  AATGTTGAGACCATGCTAAAACTCAAAGTGAGCCTTAGCTACTGGGAGAC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAGACCATGCTAAAACTCAAAGTGAGCCTTAGCTACTGGGAGAC  396

seq1  CCCCCAAATGAGACTGGAGAACAAAGTTTGATGAAAAAACAAGAGGTTTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATGAGACTGGAGAACAAAGTTTGATGAAAAAACAAGAGGTTTA  446

seq1  TTTTTCTAGTGTGCTGGGGTGGTCCTGCACCCAGAGGAAAGGTGACCCCT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGTGTGCTGGGGTGGTCCTGCACCCAGAGGAAAGGTGACCCCT  496

seq1  TTTTTTCGTTCATAAGTCTTTTATATAGTTTTTGAGTGCAGATTATAACA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCGTTCATAAGTCTTTTATATAGTTTTTGAGTGCAGATTATAACA  546

seq1  ACAGTAACTAGGCACGTAATGATTGGTGGTTCTGGTGACCTTTACATTAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACTAGGCACGTAATGATTGGTGGTTCTGGTGACCTTTACATTAA  596

seq1  TTGGCTGGGCATGGAGGGGGACTCAGGGACCTTTTGTAAGGCCCTGTGGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGCATGGAGGGGGACTCAGGGACCTTTTGTAAGGCCCTGTGGG  646

seq1  AAGTTCTAAGACAAGTTGGGGCTCTCTCAACCAATTACAGCCTTCTCTTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAAGACAAGTTGGGGCTCTCTCAACCAATTACAGCCTTCTCTTC  696

seq1  AATATGCTCCTCAGTACACACTTTTTGTTTTTGTGATAGTGAAGTTTGAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTCCTCAGTACACACTTTTTGTTTTTGTGATAGTGAAGTTTGAT  746

seq1  TTTAGGGCACAACCACATACTAACACCATTTTATTAAATATTGAGACCAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGCACAACCACATACTAACACCATTTTATTAAATATTGAGACCAC  796

seq1  AGGACTGGGTTGGGTGCTGAGGCTTCAGTGGTCCACACTTCCATTAGACA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGGTTGGGTGCTGAGGCTTCAGTGGTCCACACTTCCATTAGACA  846

seq1  AGTAAAAGCATGATTAGAACTAGTACCTAGGGGCTGGCGAGATGGCTCAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGCATGATTAGAACTAGTACCTAGGGGCTGGCGAGATGGCTCAG  896

seq1  TGGTTAAGAGCGCCGACTGTTCTTCCGAAGGTCCCAAGTTCAAATCCCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAGCGCCGACTGTTCTTCCGAAGGTCCCAAGTTCAAATCCCAG  946

seq1  CAACCACATGGTGGCTCACAACCATCCATAATGAAATCTGATGCCCTCTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCATCCATAATGAAATCTGATGCCCTCTT  996

seq1  CTGGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAGTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAGTC  1046

seq1  TTTAAAAAAAAAAAAAAAAAAAGGAACTAGTCCCTAGAGGAGTGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAAAAAAAAAAAGGAACTAGTCCCTAGAGGAGTGAATTC  1095