BAC Information

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BAC

Clone NameB6Ng01-163K15
Chromosome6 (Build37)
Map Location 115,222,082 - 115,362,213
singlet/doubletdoublet
Overlap geneSyn2
Upstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Timp4
Downstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K15.bB6Ng01-163K15.g
ACCDH956194DH956195
length1,2551,087
definitionDH956194|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K15, 5' end.DH956195|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,360,958 - 115,362,213)(115,222,082 - 115,223,171)
sequence
gaattcaactggtgcttccaaagttatctagaatggcagcctagctttga
aaagtgggtccaagattcctgacaagtttgtggactaattaaaccacatt
ccaaccatatactttatgcttccctttccaggtttctgcagatataccaa
gatctaggaggtaggatattctgtttatatgtccacaaacatgagtttca
ttttgagtaaacgtcatttgagatatttagaaaaaattattaaagcacaa
agagaaggaggggaccaaataggaagacagaaagaaacaagtttctcaag
tctgaaatggttgcctcctccccaaacaaaatataaaattgagccttaac
tcagtccctctaattatgtttttgttatctattgcacacagtcagatgaa
cagctcaaatgcctacagtcactctgggcaagttgacaaatatcctacac
attgaaatgagaagtgggaaggaggccagattgcttaattgtttgttact
tgggagtctgaaaaggtggacaagccaaaatctttatggggatccaaaga
gtacagctccttccttaggcagctggagaaaacaatgggccagattctca
ctctgtgtaatcacagaggacgactccattgtatagcccattgtttctcc
catgtactgcctgaaggggaagtatattgttatctaagggagaccttcca
taagagagttacatatgatgagaacatagcctctgggaaattaatagaga
tgtggcattcagttcaggagggagctttcagataaacattttgggaactg
tgcacttaaaaggcccaagcattaaaaccaggaagccgtgctgactgacc
aagagtcaggctaaataaagaagctctgaaatgcttatggggcaggtaaa
agactagctggatctcacaggtaacagaatatcatgatgaacttttcaca
tgtccaagaaatttcagacacatatactcactctgacctcctttttgata
aaacctggggaaactgaagcacaaagtgcttcattaagatgacacagaca
ggcggtagaagtggaatgatttgcatgctgcttttgtaaaaatcaaccct
caagtaggctgtgcctgggacatagctttattttaactgtgcttgagaca
accttatgggctgacttcttatttttgaaaaaaataaacgcatttttcta
tggaccaaatcttggtttcttggggccttattgttttggtttgtgggggt
tactc
gaattcagcatcccaggaggctcttggtgactggagacagatcccgtggt
agccaaaccccacagggaataagccctcagcccctagcagacagcaggct
tgtgggaggagccagagtgtctcagcctggcaagggacagtcctagggga
ctctcctcctggcttcctcagcccctgagaagtcttccatccccagcctc
agtggaaccagggacaggagaaactcttcaggcgccatcaagggtagcca
aggcacattcccaggctctggcctctctccccaaagccttgggaagggca
ctttggggctcattttatccttgaatgtctcacgtgtgtatttctgtgac
tgaggagagccagggtcagcctgcatggtgggtgcctcctgtgaggcctg
agggagagcactggcaagcaccagtctagatgcttcacatgacctcggaa
agagactatcaataaggttgggaccagaaggcatgcattcttttaggaca
tgtggggaactgaaggctagaaaggttagttccactgtgctggagcaact
gggaatcttggtataacatcttctactacatacagcattgtgaggtgtaa
aggacaggtcacataaaggcccatttacgtgggacacagtaaacactcgg
gaaatttcaggagaattaagtggcatgtctagggagaagttttaagaggg
gaacagtggccatagggaacaaagattggagagatgagtggggaggatta
ggaagctagtttagagggaccctgatgcatgagtggcgtatgtggccacc
aactggcttaatgctttagtgtgtatctcagtgtcagaactcagagcagt
tcttctgggaccagttagagtcttggaagaaagggatgtttttgttgttg
ataggtggctgacaggtaagatgggcttccctgcttgtggggtacttatg
ttaattgcaaggccaggcctggtactgtaataaactttcatacagttgta
gtcttgtcatcattgaatggcttgacactgggaaagagaccactccactt
caagggtatttgagcctaaaaagtgcctaaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115360958_115362213
seq2: B6Ng01-163K15.b_41_1295 (reverse)

seq1  GAGTACACCCCCA-ACACCAAAACAAAAAGGCCCCCAAGAAACACAGATT  49
      ||||| ||||||| | |||||||||| |||| |||||||||||  ||| |
seq2  GAGTA-ACCCCCACAAACCAAAACAATAAGG-CCCCAAGAAACCAAGA-T  47

seq1  TTGTTTCATAGAAAAATGCTTTTTTTTTTTTTCTCAAAAATAAG-AGTCA  98
      ||| | ||||||||||||| ||| ||||||   ||||||||||| |||||
seq2  TTGGTCCATAGAAAAATGCGTTTATTTTTT---TCAAAAATAAGAAGTCA  94

seq1  GCCTATAA-GTTG-CTCA--GACAGTTAAAAT-AAGCTATGT-CCATGCA  142
      ||| |||| |||| ||||   ||||||||||| ||||||||| ||| |||
seq2  GCCCATAAGGTTGTCTCAAGCACAGTTAAAATAAAGCTATGTCCCAGGCA  144

seq1  CAGCCTACTAGA-GGTTGATGTATACAAAGGCAGCATGCAAATCATTCTA  191
      ||||||||| || ||||||| | |||||| |||||||||||||||||| |
seq2  CAGCCTACTTGAGGGTTGATTTTTACAAAAGCAGCATGCAAATCATTCCA  194

seq1  CTTCTACCGCCTTGTCTGTGTCATCTGTAAATGAAGCACTTTGTGCCTCA  241
      ||||||||||| |||||||||||||  | ||||||||||||||||| |||
seq2  CTTCTACCGCC-TGTCTGTGTCATC--TTAATGAAGCACTTTGTGCTTCA  241

seq1  GTTTCCCCAGGTTTTATCAAAAAGGAGGTCAGAGTGAGTATATGTGTCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCAGGTTTTATCAAAAAGGAGGTCAGAGTGAGTATATGTGTCTG  291

seq1  GAATTTCTTGGACATGTGAAAAGTTCATCATGATATTTCTGTTACCTGTG  341
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATTTCTTGGACATGTGAAAAGTTCATCATGATA-TTCTGTTACCTGTG  340

seq1  AGATCCAGCTAGTCTTTTACCTGCCCCATAAGCATTTCAGAGCTTCTTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCTAGTCTTTTACCTGCCCCATAAGCATTTCAGAGCTTCTTTA  390

seq1  TTTAGCCTGACTCTTGGTCAGTCAGCACGGCTTCCTGGTTTTAATGCTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTGACTCTTGGTCAGTCAGCACGGCTTCCTGGTTTTAATGCTTG  440

seq1  GGCCTTTTAAGTGCACAGTTCCCAAAATGTTTATCTGAAAGCTCCCTCCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTAAGTGCACAGTTCCCAAAATGTTTATCTGAAAGCTCCCTCCT  490

seq1  GAACTGAATGCCACATCTCTATTAATTTCCCAGAGGCTATGTTCTCATCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATGCCACATCTCTATTAATTTCCCAGAGGCTATGTTCTCATCA  540

seq1  TATGTAACTCTCTTATGGAAGGTCTCCCTTAGATAACAATATACTTCCCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTCTCTTATGGAAGGTCTCCCTTAGATAACAATATACTTCCCC  590

seq1  TTCAGGCAGTACATGGGAGAAACAATGGGCTATACAATGGAGTCGTCCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAGTACATGGGAGAAACAATGGGCTATACAATGGAGTCGTCCTC  640

seq1  TGTGATTACACAGAGTGAGAATCTGGCCCATTGTTTTCTCCAGCTGCCTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTACACAGAGTGAGAATCTGGCCCATTGTTTTCTCCAGCTGCCTA  690

seq1  AGGAAGGAGCTGTACTCTTTGGATCCCCATAAAGATTTTGGCTTGTCCAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGCTGTACTCTTTGGATCCCCATAAAGATTTTGGCTTGTCCAC  740

seq1  CTTTTCAGACTCCCAAGTAACAAACAATTAAGCAATCTGGCCTCCTTCCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGACTCCCAAGTAACAAACAATTAAGCAATCTGGCCTCCTTCCC  790

seq1  ACTTCTCATTTCAATGTGTAGGATATTTGTCAACTTGCCCAGAGTGACTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATTTCAATGTGTAGGATATTTGTCAACTTGCCCAGAGTGACTG  840

seq1  TAGGCATTTGAGCTGTTCATCTGACTGTGTGCAATAGATAACAAAAACAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTTGAGCTGTTCATCTGACTGTGTGCAATAGATAACAAAAACAT  890

seq1  AATTAGAGGGACTGAGTTAAGGCTCAATTTTATATTTTGTTTGGGGAGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGGGACTGAGTTAAGGCTCAATTTTATATTTTGTTTGGGGAGGA  940

seq1  GGCAACCATTTCAGACTTGAGAAACTTGTTTCTTTCTGTCTTCCTATTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCATTTCAGACTTGAGAAACTTGTTTCTTTCTGTCTTCCTATTTG  990

seq1  GTCCCCTCCTTCTCTTTGTGCTTTAATAATTTTTTCTAAATATCTCAAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCCTTCTCTTTGTGCTTTAATAATTTTTTCTAAATATCTCAAAT  1040

seq1  GACGTTTACTCAAAATGAAACTCATGTTTGTGGACATATAAACAGAATAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTACTCAAAATGAAACTCATGTTTGTGGACATATAAACAGAATAT  1090

seq1  CCTACCTCCTAGATCTTGGTATATCTGCAGAAACCTGGAAAGGGAAGCAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCTAGATCTTGGTATATCTGCAGAAACCTGGAAAGGGAAGCAT  1140

seq1  AAAGTATATGGTTGGAATGTGGTTTAATTAGTCCACAAACTTGTCAGGAA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATGGTTGGAATGTGGTTTAATTAGTCCACAAACTTGTCAGGAA  1190

seq1  TCTTGGACCCACTTTTCAAAGCTAGGCTGCCATTCTAGATAACTTTGGAA  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACCCACTTTTCAAAGCTAGGCTGCCATTCTAGATAACTTTGGAA  1240

seq1  GCACCAGTTGAATTC  1256
      |||||||||||||||
seq2  GCACCAGTTGAATTC  1255

seq1: chr6_115222082_115223171
seq2: B6Ng01-163K15.g_68_1154

seq1  GAATTCAGCATCCCAGGAGGCTCTTGGTGACTGGAGACAGATCCCGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCCCAGGAGGCTCTTGGTGACTGGAGACAGATCCCGTGGT  50

seq1  AGCCAAACCCCACAGGGAATAAGCCCTCAGCCCCTAGCAGACAGCAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACCCCACAGGGAATAAGCCCTCAGCCCCTAGCAGACAGCAGGCT  100

seq1  TGTGGGAGGAGCCAGAGTGTCTCAGCCTGGCAAGGGACAGTCCTAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGGAGCCAGAGTGTCTCAGCCTGGCAAGGGACAGTCCTAGGGGA  150

seq1  CTCTCCTCCTGGCTTCCTCAGCCCCTGAGAAGTCTTCCATCCCCAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCTGGCTTCCTCAGCCCCTGAGAAGTCTTCCATCCCCAGCCTC  200

seq1  AGTGGAACCAGGGACAGGAGAAACTCTTCAGGCGCCATCAAGGGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACCAGGGACAGGAGAAACTCTTCAGGCGCCATCAAGGGTAGCCA  250

seq1  AGGCACATTCCCAGGCTCTGGCCTCTCTCCCCAAAGCCTTGGGAAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATTCCCAGGCTCTGGCCTCTCTCCCCAAAGCCTTGGGAAGGGCA  300

seq1  CTTTGGGGCTCATTTTATCCTTGAATGTCTCACGTGTGTATTTCTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGCTCATTTTATCCTTGAATGTCTCACGTGTGTATTTCTGTGAC  350

seq1  TGAGGAGAGCCAGGGTCAGCCTGCATGGTGGGTGCCTCCTGTGAGGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGCCAGGGTCAGCCTGCATGGTGGGTGCCTCCTGTGAGGCCTG  400

seq1  AGGGAGAGCACTGGCAAGCACCAGTCTAGATGCTTCACATGACCTCGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGCACTGGCAAGCACCAGTCTAGATGCTTCACATGACCTCGGAA  450

seq1  AGAGACTATCAATAAGGTTGGGACCAGAAGGCATGCATTCTTTTAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTATCAATAAGGTTGGGACCAGAAGGCATGCATTCTTTTAGGACA  500

seq1  TGTGGGGAACTGAAGGCTAGAAAGGTTAGTTCCACTGTGCTGGAGCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAACTGAAGGCTAGAAAGGTTAGTTCCACTGTGCTGGAGCAACT  550

seq1  GGGAATCTTGGTATAACATCTTCTACTACATACAGCATTGTGAGGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTTGGTATAACATCTTCTACTACATACAGCATTGTGAGGTGTAA  600

seq1  AGGACAGGTCACATAAAGGCCCATTTACGTGGGACACAGTAAACACTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGTCACATAAAGGCCCATTTACGTGGGACACAGTAAACACTCGG  650

seq1  GAAATTTCAGGAGAATTAAGTGGCATGTCTAGGGAGAAGTTTTAAGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCAGGAGAATTAAGTGGCATGTCTAGGGAGAAGTTTTAAGAGGG  700

seq1  GAACAGTGGCCATAGGGAACAAAGATTGGAGAGATGAGTGGGGAGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGGCCATAGGGAACAAAGATTGGAGAGATGAGTGGGGAGGATTA  750

seq1  GGAAGCTAGTTTAGAGGGACCCTGATGCATGAGTGGCGTAGGTGGCCACC  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAAGCTAGTTTAGAGGGACCCTGATGCATGAGTGGCGTATGTGGCCACC  800

seq1  AACTGGCTTAATGCTTAAGTGTGTATCTCAGTGTCAGAACTCAGAGCAGG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AACTGGCTTAATGCTTTAGTGTGTATCTCAGTGTCAGAACTCAGAGCAGT  850

seq1  TCTTCTGGAACCAGTTAGAGTCTTGGAAGAAAGGGATG-TTTTGTTGTTG  899
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTCTGGGACCAGTTAGAGTCTTGGAAGAAAGGGATGTTTTTGTTGTTG  900

seq1  A-AGGTGGCTGACAGGTAAGATGGGCTTCCCTGC-TGTGGGGTACTAAGG  947
      | |||||||||||||||||||||||||||||||| ||||||||||| | |
seq2  ATAGGTGGCTGACAGGTAAGATGGGCTTCCCTGCTTGTGGGGTACTTATG  950

seq1  ATAATGCAAAGGCCAGGCCTGGTACTGT-ATAAACTTCTATACAGTTAGA  996
       ||||   |||||||||||||||||||| ||||||||  ||||||||  |
seq2  TTAATTGCAAGGCCAGGCCTGGTACTGTAATAAACTTTCATACAGTTGTA  1000

seq1  GTCATGTCATCATTGAATGGCTGAGCACTGGG-AAGAGAACACTTCTACT  1045
      ||| ||||||||||||||||||   ||||||| |||||| ||| || |||
seq2  GTCTTGTCATCATTGAATGGCTTGACACTGGGAAAGAGACCAC-TCCACT  1049

seq1  TCAAGGGTATTTGAG-CTAAAAAGTGGCCCTAGGGAGCAGGAGAGA  1090
      ||||||||||||||| ||||||||||  ||||      ||||||||
seq2  TCAAGGGTATTTGAGCCTAAAAAGTG--CCTA------AGGAGAGA  1087