BAC Information

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BAC

Clone NameB6Ng01-163K23
Chromosome6 (Build37)
Map Location 104,223,008 - 104,356,909
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K23.bB6Ng01-163K23.g
ACCDH956210DH956211
length1,1961,116
definitionDH956210|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K23, 5' end.DH956211|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,355,731 - 104,356,909)(104,223,008 - 104,224,114)
sequence
gaattccaccaacccaagccgcctgccaggcaacacaaggattccctgca
ataacctacaagagctctctcctcctaccattttccccttggccccaggc
cagagtaagcccaggccccactctgttctcagctcttctgcaacatccag
aggtgtctgagatgtcgaaaactgaggacctgacatccctggtctatgtg
tggttcagggaccccagcactgactcttccacagcacccagcggagtctg
cggtgctagataatctgagccagactctggcagttccccgagggaccgca
gactgttcccgtgtcccgcctcacccagtggccctagtcccattcctacc
ccacattctttagtctcagagaatcagtgggcacctgcaagcacgagcac
atccccacacatagacatatgagcattacacagaattaaaaataaaataa
aacaaataaaggatggctcttaagagaatttgaaaacaaagaggggttga
acaattatattgcaggagtgttaagtgataaagataaaatagaaattgta
gattcggaatatcctaggaacaaaaatgttcaattaaaattggtttggta
tgtcagacaattattaacaataaattagatataaggatttaaaaattaaa
ttaattactgaaatttttttatgatctaaggagctaagatgggcagtgct
atcatatatgaagaaattgaggctgtgaaaaaggaaggttagaataatga
gataatcagtaaaaagtacagggcaaggaagttttgccttccttttgcga
ttataatataatataattatataatatatatgcaaatatataaacataca
catacacacacacacacacacacacacacatatatatatatatatatata
tatatatatatatatatatatagcctgctcagtctacaaaaaaattcctt
gtatttcatgcttttgttgatgatgatttgttattgtgtaactagttgct
gtgataattccctaagaaaaagactatcttttcaactcagcacttcctaa
gtttgcctgtaagttgactgttggtggaagtaaaggccttcggtggtgtc
caccttcaaacatgtcttactgttgtttgcaaggcaaaggatttaatggt
ccaaattattttggttgccaaaccattccattagcatcacatgtgc
gaattctatgtgtaaagagaaaggaaaccattcagagacctgggatatgg
gaagtggtaggtaaggaaagaaatagatgacattaataaatttcataagt
tcctactttcatatttgaagagtaattatgactgtggcccttggctatat
atgttacaccttatgagacaaagggagacatattaaaatacctataagga
agttttcagtggtttatattatttgtgtgagggaagaagtgctaaaatga
gggtcaaggttataagccttttttgtatacttaacataattcaacagaac
tcaggacatatatttttccgtttttgactaagaaaactaggaaattatta
ggcagtgacatcttgatcttgagttggccatttaaattgggactagttag
tcctaaattttagtgtactgtattttatagcagagaatttcataaattaa
ctcttattagacactaatttagtgagcatgacattatgaattgatttgga
gtttgcacaagcattgtcttatggagcatatatgaagctgtagcatcctt
taaggaatttctctcaatcacttacttccataaacatggatcagatctcc
atcttaggaaaatcccgttgatctcactagtgagtttttcattggtactt
gctctagtgcatattaccttgctcctagttcatattccatgcgcatatca
ccacattcaaatcaattctaggtcaatagctcgcatagacaaaatataaa
ggggttgataacatgtttgtgtttttcatttacatattcctatataatat
attcatatatttattcatatattttattttataaaatataaatataaaca
tatcactttccctttcctccctacaattgttctcatatgcctccactatt
tctctctctagttcatggattctttcccttgatttttaaataaatataca
tatacatgctcattccacatggagcatacacatacatattatatcctgct
ccctccatattaatgctaccttataagtatataattttcaagactgacca
tgtgatatttggagtaagctattagtgtattttcccataggaaagaaaat
tttattattctatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104355731_104356909
seq2: B6Ng01-163K23.b_46_1241 (reverse)

seq1  GCACATGGTGAATGCTAGTGGAATAGTTT-GCAACCAAA--TATTGTGAC  47
      |||||| ||| |||||| |||||| |||| |||||||||   |||  |||
seq2  GCACAT-GTG-ATGCTAATGGAATGGTTTGGCAACCAAAATAATTTGGAC  48

seq1  ATTTAAATCC-TTGCCTTGCAAGACAACAGT-AGACATG-TTGAA-GTGG  93
        |||||||| ||||||||||| |||||||| ||||||| ||||| ||||
seq2  CATTAAATCCTTTGCCTTGCAA-ACAACAGTAAGACATGTTTGAAGGTGG  97

seq1  ACA-CACGAAAGGCC-CTACTT-CAC--ACAGTCAAC-TACAGGCAA--C  135
      ||| |||  ||||||  ||||| |||  ||||||||| |||||||||   
seq2  ACACCACCGAAGGCCTTTACTTCCACCAACAGTCAACTTACAGGCAAACT  147

seq1  TAAGAAGTGCTGAGTTGAAGAGATAGTCTTTT--CTAGGGAA-TATCACA  182
      || |||||||||||||||| ||||||||||||   ||||||| |||||||
seq2  TAGGAAGTGCTGAGTTGAAAAGATAGTCTTTTTCTTAGGGAATTATCACA  197

seq1  GCAACTAGTTACACAATAACAAATCATCATCAACAAAAGCATG-AATACA  231
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAACTAGTTACACAATAACAAATCATCATCAACAAAAGCATGAAATACA  247

seq1  AGGAA-TCTTATGTAGACTGAGCAGGCTATATATATATATATATATATAT  280
      ||||| | || |||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTTTTGTAGACTGAGCAGGCTATATATATATATATATATATAT  297

seq1  ATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGT  347

seq1  GTATGTTTATATATTTGCATATATATTATATAATTATATTATATTATAAT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTATATATTTGCATATATATTATATAATTATATTATATTATAAT  397

seq1  CGCAAAAGGAAGGCAAAACTTCCTTGCCCTGTACTTTTTACTGATTATCT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAGGAAGGCAAAACTTCCTTGCCCTGTACTTTTTACTGATTATCT  447

seq1  CATTATTCTAACCTTCCTTTTTCACAGCCTCAATTTCTTCATATATGATA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTAACCTTCCTTTTTCACAGCCTCAATTTCTTCATATATGATA  497

seq1  GCACTGCCCATCTTAGCTCCTTAGATCATAAAAAAATTTCAGTAATTAAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCCATCTTAGCTCCTTAGATCATAAAAAAATTTCAGTAATTAAT  547

seq1  TTAATTTTTAAATCCTTATATCTAATTTATTGTTAATAATTGTCTGACAT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTAAATCCTTATATCTAATTTATTGTTAATAATTGTCTGACAT  597

seq1  ACCAAACCAATTTTAATTGAACATTTTTGTTCCTAGGATATTCCGAATCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAATTTTAATTGAACATTTTTGTTCCTAGGATATTCCGAATCT  647

seq1  ACAATTTCTATTTTATCTTTATCACTTAACACTCCTGCAATATAATTGTT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTATTTTATCTTTATCACTTAACACTCCTGCAATATAATTGTT  697

seq1  CAACCCCTCTTTGTTTTCAAATTCTCTTAAGAGCCATCCTTTATTTGTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCTTTGTTTTCAAATTCTCTTAAGAGCCATCCTTTATTTGTTT  747

seq1  TATTTTATTTTTAATTCTGTGTAATGCTCATATGTCTATGTGTGGGGATG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTAATTCTGTGTAATGCTCATATGTCTATGTGTGGGGATG  797

seq1  TGCTCGTGCTTGCAGGTGCCCACTGATTCTCTGAGACTAAAGAATGTGGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTGCTTGCAGGTGCCCACTGATTCTCTGAGACTAAAGAATGTGGG  847

seq1  GTAGGAATGGGACTAGGGCCACTGGGTGAGGCGGGACACGGGAACAGTCT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATGGGACTAGGGCCACTGGGTGAGGCGGGACACGGGAACAGTCT  897

seq1  GCGGTCCCTCGGGGAACTGCCAGAGTCTGGCTCAGATTATCTAGCACCGC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCCTCGGGGAACTGCCAGAGTCTGGCTCAGATTATCTAGCACCGC  947

seq1  AGACTCCGCTGGGTGCTGTGGAAGAGTCAGTGCTGGGGTCCCTGAACCAC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCGCTGGGTGCTGTGGAAGAGTCAGTGCTGGGGTCCCTGAACCAC  997

seq1  ACATAGACCAGGGATGTCAGGTCCTCAGTTTTCGACATCTCAGACACCTC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACCAGGGATGTCAGGTCCTCAGTTTTCGACATCTCAGACACCTC  1047

seq1  TGGATGTTGCAGAAGAGCTGAGAACAGAGTGGGGCCTGGGCTTACTCTGG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTGCAGAAGAGCTGAGAACAGAGTGGGGCCTGGGCTTACTCTGG  1097

seq1  CCTGGGGCCAAGGGGAAAATGGTAGGAGGAGAGAGCTCTTGTAGGTTATT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCCAAGGGGAAAATGGTAGGAGGAGAGAGCTCTTGTAGGTTATT  1147

seq1  GCAGGGAATCCTTGTGTTGCCTGGCAGGCGGCTTGGGTTGGTGGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAATCCTTGTGTTGCCTGGCAGGCGGCTTGGGTTGGTGGAATTC  1196

seq1: chr6_104223008_104224114
seq2: B6Ng01-163K23.g_70_1185

seq1  GAATTCTATGTGTAAAGAGAAAGGAAACCATTCAGAGACCTGGGATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGTAAAGAGAAAGGAAACCATTCAGAGACCTGGGATATGG  50

seq1  GAAGTGGTAGGTAAGGAAAGAAATAGATGACATTAATAAATTTCATAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTAGGTAAGGAAAGAAATAGATGACATTAATAAATTTCATAAGT  100

seq1  TCCTACTTTCATATTTGAAGAGTAATTATGACTGTGGCCCTTGGCTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTCATATTTGAAGAGTAATTATGACTGTGGCCCTTGGCTATAT  150

seq1  ATGTTACACCTTATGAGACAAAGGGAGACATATTAAAATACCTATAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACACCTTATGAGACAAAGGGAGACATATTAAAATACCTATAAGGA  200

seq1  AGTTTTCAGTGGTTTATATTATTTGTGTGAGGGAAGAAGTGCTAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGTGGTTTATATTATTTGTGTGAGGGAAGAAGTGCTAAAATGA  250

seq1  GGGTCAAGGTTATAAGCCTTTTTTGTATACTTAACATAATTCAACAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGGTTATAAGCCTTTTTTGTATACTTAACATAATTCAACAGAAC  300

seq1  TCAGGACATATATTTTTCCGTTTTTGACTAAGAAAACTAGGAAATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACATATATTTTTCCGTTTTTGACTAAGAAAACTAGGAAATTATTA  350

seq1  GGCAGTGACATCTTGATCTTGAGTTGGCCATTTAAATTGGGACTAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGACATCTTGATCTTGAGTTGGCCATTTAAATTGGGACTAGTTAG  400

seq1  TCCTAAATTTTAGTGTACTGTATTTTATAGCAGAGAATTTCATAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATTTTAGTGTACTGTATTTTATAGCAGAGAATTTCATAAATTAA  450

seq1  CTCTTATTAGACACTAATTTAGTGAGCATGACATTATGAATTGATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTAGACACTAATTTAGTGAGCATGACATTATGAATTGATTTGGA  500

seq1  GTTTGCACAAGCATTGTCTTATGGAGCATATATGAAGCTGTAGCATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCACAAGCATTGTCTTATGGAGCATATATGAAGCTGTAGCATCCTT  550

seq1  TAAGGAATTTCTCTCAATCACTTACTTCCATAAACATGGATCAGATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTTCTCTCAATCACTTACTTCCATAAACATGGATCAGATCTCC  600

seq1  ATCTTAGGAAAATCCCGTTGATCTCACTAGTGAGTTTTTCATTGGTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGAAAATCCCGTTGATCTCACTAGTGAGTTTTTCATTGGTACTT  650

seq1  GCTCTAGTGCATATTACCTTGCTCCTAGTTCATATTCCATGCGCATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTGCATATTACCTTGCTCCTAGTTCATATTCCATGCGCATATCA  700

seq1  CCACATTCAAATCAATTCTAGGTCAATAGCTCGCATAGACAAAATATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCAAATCAATTCTAGGTCAATAGCTCGCATAGACAAAATATAAA  750

seq1  GGGGTTGATAACATGTTTGTGTTTTTCATTTACATATTCCTATATAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGATAACATGTTTGTGTTTTTCATTTACATATTCCTATATAATAT  800

seq1  ATTCATATATTTATTCATATATTTTATTTTATAAAATATAAATATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATTTATTCATATATTTTATTTTATAAAATATAAATATAAACA  850

seq1  TATCACTTTCCCTTTCCTCCCTACAATTGTTCTCATATGCCTCCACTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTTCCCTTTCCTCCCTACAATTGTTCTCATATGCCTCCACTATT  900

seq1  TCTCTCTCTAGTTCATGGATTCTTTCCCTTGATTTTTTATATAAATATAC  950
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TCTCTCTCTAGTTCATGGATTCTTTCCCTTGA-TTTTTAAATAAATATAC  949

seq1  ATATACATGCTCATT-CACAT-GAGCATACACATACATA-TATATCCTGC  997
      ||||||||||||||| ||||| ||||||||||||||||| ||||||||||
seq2  ATATACATGCTCATTCCACATGGAGCATACACATACATATTATATCCTGC  999

seq1  TCACTCCATA-TAATGCTA-CTTATAAGTATATAA-TTTCAAGACTGACC  1044
      || ||||||| |||||||| ||||||||||||||| ||||||||||||||
seq2  TCCCTCCATATTAATGCTACCTTATAAGTATATAATTTTCAAGACTGACC  1049

seq1  ATGTGATATT--GAGT-AGCTAATTAGTGTATTTTCCCATAGG-AAGAAA  1090
      ||||||||||  |||| |||| ||||||||||||||||||||| ||||||
seq2  ATGTGATATTTGGAGTAAGCT-ATTAGTGTATTTTCCCATAGGAAAGAAA  1098

seq1  A-TTTATTATTCTATCAG  1107
      | ||||||||||||||||
seq2  ATTTTATTATTCTATCAG  1116