BAC Information

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BAC

Clone NameB6Ng01-164C08
Chromosome6 (Build37)
Map Location 128,310,369 - 128,493,987
singlet/doubletdoublet
Overlap gene5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
Upstream geneLOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3
Downstream geneKlrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C08.bB6Ng01-164C08.g
ACCDH956551DH956552
length7591,190
definitionDH956551|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C08, 5' end.DH956552|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,310,369 - 128,311,125)(128,492,798 - 128,493,987)
sequence
gaattcagagaattacaagctcactgtagacagagtaggaaaggtagctc
agcagtaaagaacatgcctcaaaaaccaagggcttgctgggcagttggtg
gcgcacgcctttaatcccagcacttgggaggcaaaggcagaggcagaggc
agaggcaggcggatttctgagttcaaggccagcctggtctacagagtgag
ttccaggacagccagggctacacagagaaactctgtctcgaaaacccaaa
ccaaaccaaacaaacaaacaaacaaaaaaacaaagccaagggcttaagtt
tgatctccagaactcacaaaaatgtggaaggccgaaaccaattcccaaaa
gacatcctttgacatctatatgtgtggcatgtgtcccctcaaatgcattc
gtcctcacacacaatgtcactatctgtgaggctgtgcctatctagctaac
aaaagaaaaaagaaaaagaggctaggggtggtaacatccatcttaaatcc
cagcattcaggaggcaggcagatttctctgagttggaggtcaacctggtc
tatacagtgagttccacgacagtaaggggatacaaagtgagaccctattt
aaaaaacattttaaagaatgaatgacaaaaaatattagacatagtgtcaa
cattgggtctgaaaaccaggtgaggccacatgactgtggggttgggttga
gttaccactaaggtttcaaatagaagtttgtaatcacatctagggttttg
ttaaaagat
gaattccagaccaagtttgaactcacggtgaccctcacgtatgtgtaacg
tttttgacattcgctcccaggttagtgaactctatcaaagagttgtttca
aataggactgaagtaaaccaaatctgaatgacagtgaccacggtgagtcc
cacgggcaatctgctgcatagccacgtcactgccctttttagatactggc
ttattagaaagaccttctgcaatatctacgcacatatgtacacctgaaag
ctgttatcttgctggccgattaagagggtggaagcaatcttccagtgttg
agcagatctaaagctgacaggaacgcacaccatgtaaacaaggcagttct
gtctgtagactttgtgagatttggggaggctttgcgttcacagaggtcat
gatcggaaccagctgatgtcacctcacccacccggcatctcgaccactgt
cactgggctgcgactgcgctcaaacagttgaggctgaggtttctcagctc
ctccctttctagtttatggcagcgctccagactgcaagcttgttagtgcg
catgcccacctgccaccctccccgagagagctcacgtttctaagcccagg
tagagagatgtttgctttctcacttcagctacactggagctcgtgaaagc
tcagttacagtccttgtggatgtgaagatgctctctggctttactcctgt
cgtctcatccaccgaggaggtaaataagggtggccctgctccccagcaca
gagagagtgagagtgcataaaataatatgggataatggaaataatgggat
ccttcatcatctaagcacatttcttcagagttcacgtttgtatttagtct
gtactggaataggagagatgatatttttattctgcagaaatgcagagtca
ttatgcccactgtttcatcatgtgtttctttgccgggttcccttgtaaat
caccgaaacactgaggtacaaagggaacgttccctgacagacagcacaga
gctcatttctagagggggactcagtattctgaccctcaaaccttcttgtc
atcttcttccaagcttaaatttcattagcaaggtaccgaagacggacata
aagaatggcacgtttcgttttccatcttggaaatgtagttcaaccaacat
aggttttggtttttttttcttccatggcctctttgtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128310369_128311125
seq2: B6Ng01-164C08.b_47_804

seq1  GAATTCAGAGAATTACAAGCTCACTGTAGACAGAGTAGGAAAGGTAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAATTACAAGCTCACTGTAGACAGAGTAGGAAAGGTAGCTC  50

seq1  AGCAGTAAAGAACATGCCTCAAAAACCAAGGGCTTGCTGGGCAGTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAGAACATGCCTCAAAAACCAAGGGCTTGCTGGGCAGTTGGTG  100

seq1  GCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGAGGCAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGAGGCAGAGGC  150

seq1  AGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAG  200

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCGAAAACCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCGAAAACCCAAA  250

seq1  CCAAACCAAACAAACAAACAAACAAAAAAACAAAGCCAAGGGCTTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAACAAACAAACAAACAAAAAAACAAAGCCAAGGGCTTAAGTT  300

seq1  TGATCTCCAGAACTCACAAAAATGTGGAAGGCCGAAACCAATTCCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCAGAACTCACAAAAATGTGGAAGGCCGAAACCAATTCCCAAAA  350

seq1  GACATCCTTTGACATCTATATGTGTGGCATGTGTCCCCTCAAATGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTTTGACATCTATATGTGTGGCATGTGTCCCCTCAAATGCATTC  400

seq1  GTCCTCACACACAATGTCACTATCTGTGAGGCTGTGCCTATCTAGCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACACACAATGTCACTATCTGTGAGGCTGTGCCTATCTAGCTAAC  450

seq1  AAAAGAAAAAAGAAAAAGAGGCTAGGGGTGGTAACATCCATCTTAAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAGAAAAAGAGGCTAGGGGTGGTAACATCCATCTTAAATCC  500

seq1  CAGCATTCAGGAGGCAGGCAGATTTCTCTGAGTTGGAGGTCAACCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCAGGAGGCAGGCAGATTTCTCTGAGTTGGAGGTCAACCTGGTC  550

seq1  TATACAGTGAGTTCCACGACAGTAAGGGGATACAAAGTGAGACCCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGAGTTCCACGACAGTAAGGGGATACAAAGTGAGACCCTATTT  600

seq1  AAAAAACATTTTAAAGAATGAATGACAAAAAATATTAGACATAGTGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACATTTTAAAGAATGAATGACAAAAAATATTAGACATAGTGTCAA  650

seq1  CATTGGGTCTGAAAACCAGGTGAGGCCACATGACTGTGGGGTTGGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTCTGAAAACCAGGTGAGGCCACATGACTGTGGGGTTGGGTTGA  700

seq1  GTAACCACTAGGTTTTCAAATAGAAGTTTGTAATCACATCTA-GGTTTTG  749
      || ||||||| | ||||||||||||||||||||||||||||| |||||||
seq2  GTTACCACTAAGGTTTCAAATAGAAGTTTGTAATCACATCTAGGGTTTTG  750

seq1  TTAAAAGA  757
      ||||||||
seq2  TTAAAAGA  758

seq1: chr6_128492798_128493987
seq2: B6Ng01-164C08.g_68_1257 (reverse)

seq1  AGAAACAAA---GTCATGAAAGAAAAAAAAAAACCAAAA-CTATTGTTGT  46
      |||||||||   | |||| |||  ||||||||||||||| ||||  | ||
seq2  AGAAACAAAGAGGCCATGGAAG--AAAAAAAAACCAAAACCTATGTTGGT  48

seq1  TGAACTTACATTTTCCAA---GTAGAACAGAACGTGGCCATTCTTTATGT  93
      ||||| |||| |||||||   | | |||  ||||| ||||||||||||||
seq2  TGAAC-TACA-TTTCCAAGATGGAAAACGAAACGT-GCCATTCTTTATGT  95

seq1  CCGTCTTCGTTACTTGACTATTG-AATTTAAGCTTTGAAGAGATTGACAA  142
      ||||||||| ||| |  ||| || ||||||||||| |||||   ||||||
seq2  CCGTCTTCGGTACCTTGCTAATGAAATTTAAGCTTGGAAGAAGATGACAA  145

seq1  GAAGGGTTGAGGGTCAGAATACCTGAGTCCCCCTCTAGAAATGAGCTCTG  192
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGGTTTGAGGGTCAGAATA-CTGAGTCCCCCTCTAGAAATGAGCTCTG  194

seq1  TGCTGTCTGTTCAGGGAACGTTCCCTTTGTACCTCAGTGTTTCGGTGAAT  242
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TGCTGTCTG-TCAGGGAACGTTCCCTTTGTACCTCAGTGTTTCGGTG-AT  242

seq1  TTACAAGGGAACCCGGCAAAGAAACACATGATG-AACAGTGGGCATAATG  291
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTACAAGGGAACCCGGCAAAGAAACACATGATGAAACAGTGGGCATAATG  292

seq1  ACTCTGCATTTCTGCAGAATAAAAATATCATCTCTCCTATTCCAGTACAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATTTCTGCAGAATAAAAATATCATCTCTCCTATTCCAGTACAG  342

seq1  ACTAAATACAAACGTGAACTCTGAAGAAATGTGCTTAGATGATGAAGGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATACAAACGTGAACTCTGAAGAAATGTGCTTAGATGATGAAGGAT  392

seq1  CCCATTATTTCCATTATCCCATTATTATTTTATGCACTCTCACTCTCTCT  441
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCATTATTTCCATTATCCCA-TATTATTTTATGCACTCTCACTCTCTCT  441

seq1  GTGCTGGGGAGCAGGGCCACCCTTATTTACCTCCTCGGTGGATGAGACGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGAGCAGGGCCACCCTTATTTACCTCCTCGGTGGATGAGACGA  491

seq1  CAGGAGTAAAGCCAGAGAGCATCTTCACATCCACAAGGACTGTAACTGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAAAGCCAGAGAGCATCTTCACATCCACAAGGACTGTAACTGAG  541

seq1  CTTTCACGAGCTCCAGTGTAGCTGAAGTGAGAAAGCAAACATCTCTCTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACGAGCTCCAGTGTAGCTGAAGTGAGAAAGCAAACATCTCTCTAC  591

seq1  CTGGGCTTAGAAACGTGAGCTCTCTCGGGGAGGGTGGCAGGTGGGCATGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTAGAAACGTGAGCTCTCTCGGGGAGGGTGGCAGGTGGGCATGC  641

seq1  GCACTAACAAGCTTGCAGTCTGGAGCGCTGCCATAAACTAGAAAGGGAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACAAGCTTGCAGTCTGGAGCGCTGCCATAAACTAGAAAGGGAGG  691

seq1  AGCTGAGAAACCTCAGCCTCAACTGTTTGAGCGCAGTCGCAGCCCAGTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAACCTCAGCCTCAACTGTTTGAGCGCAGTCGCAGCCCAGTGA  741

seq1  CAGTGGTCGAGATGCCGGGTGGGTGAGGTGACATCAGCTGGTTCCGATCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCGAGATGCCGGGTGGGTGAGGTGACATCAGCTGGTTCCGATCA  791

seq1  TGACCTCTGTGAACGCAAAGCCTCCCCAAATCTCACAAAGTCTACAGACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGTGAACGCAAAGCCTCCCCAAATCTCACAAAGTCTACAGACA  841

seq1  GAACTGCCTTGTTTACATGGTGTGCGTTCCTGTCAGCTTTAGATCTGCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCTTGTTTACATGGTGTGCGTTCCTGTCAGCTTTAGATCTGCTC  891

seq1  AACACTGGAAGATTGCTTCCACCCTCTTAATCGGCCAGCAAGATAACAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGAAGATTGCTTCCACCCTCTTAATCGGCCAGCAAGATAACAGC  941

seq1  TTTCAGGTGTACATATGTGCGTAGATATTGCAGAAGGTCTTTCTAATAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTGTACATATGTGCGTAGATATTGCAGAAGGTCTTTCTAATAAG  991

seq1  CCAGTATCTAAAAAGGGCAGTGACGTGGCTATGCAGCAGATTGCCCGTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCTAAAAAGGGCAGTGACGTGGCTATGCAGCAGATTGCCCGTGG  1041

seq1  GACTCACCGTGGTCACTGTCATTCAGATTTGGTTTACTTCAGTCCTATTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCGTGGTCACTGTCATTCAGATTTGGTTTACTTCAGTCCTATTT  1091

seq1  GAAACAACTCTTTGATAGAGTTCACTAACCTGGGAGCGAATGTCAAAAAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACTCTTTGATAGAGTTCACTAACCTGGGAGCGAATGTCAAAAAC  1141

seq1  GTTACACATACGTGAGGGTCACCGTGAGTTCAAACTTGGTCTGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACATACGTGAGGGTCACCGTGAGTTCAAACTTGGTCTGGAATTC  1190