BAC Information

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BAC

Clone NameB6Ng01-164F01
Chromosome6 (Build37)
Map Location 63,675,057 - 63,853,900
singlet/doubletdoublet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164F01.bB6Ng01-164F01.g
ACCDH956675DH956676
length1,0301,082
definitionDH956675|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F01, 5' end.DH956676|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,853,376 - 63,853,900)(63,675,057 - 63,676,142)
sequence
gaattccatatttaaaattttaatttgatttccgatacacaaatagtatc
tcaaaagattattggtgtcctccaaatgtttgtccaaaagcctgtgaaag
taacactaaaacagattacagttgttaaaaagaaaggatgacaatcaact
tttaagtgaagaaatgtaaattcatcaactaatattgagttccatatagt
tttaactaaagattattaaaggtgtttataaataatttaaaggagaattt
acacaaatcatctttaccccttttcctgttatgtatgagtagagtatttg
tctttagtgatccttttttttaaatttggttttgatacacaattcgtata
ggttacaaagcctttttcctgcagcaatcagaacaaaaaggatcagctgt
ctcaagctaaaccctcgatgccctacactcatataagagcgtcagctggc
agaattcaggaggcagaagagagaatcttaggtctagaagatacaataga
agacattgatacatcactcaaagaaaatgtgaaatctaagaatgttcctg
acacaaaacatccaggaaatctggtataccatgaaaagacctaacacttc
atactcatcaatgaaaaatctaccaagatgagatctcaattcttaacatc
tatgccccaaacacaaagaccctcacatttgtaaaagaaacattgcaaaa
gcttaaacagcacattgaaacccaaacattaatagtggaagacttcaaca
cacaaacacacacacacacacacacacacacacacacacacacacctcaa
cactgacaagttatccagaaaaaaatctctaaaaatcaaaacaacaaaac
taatagatgagtgcctctatctcatcccagcaatttaaaaatacatttga
aagctctaggaaaaaaaaaaaaaaagagcaagcacaccaaaggaggagta
gaaggcaggagatgaaatcaggactgaaattcagttataaacaaagaaaa
caatgcaaagaatcaagaaagaagatctgg
gaattctctatttgctctgtactccatttttaattgggttatattttggg
ggagtgttaatttcttgaattctttactaccttagatattatccctctat
cagatgcagagttaatgaagttttttttcccaatctgtaggttgctgatt
tgtcctattgactatgtcttttgcctttattttcctcctttgcagctgtg
ctcttgtttcttgatctttcctcaccatctgcttgactctttcgttccat
ttctttcatattctacagcatgaaacagtaacaatccttctgttccaacc
tggcttatagttcaatttttttagatattctaaactgatttctagcctaa
gaataaaataactatgccttcgtcagaggaatcaccttccttcatgtgta
tatcacatccctaacatgggatatcaataatgcacattcacccacttcca
tttccgctattctgaaggtcttgatggaataatcttcacagccaactccg
tgcatcagctgaagtctgctgacatatctttgcatacacattccttttcc
tgatcacatgctcctctgctgattttagcctcctacctttgtattttatt
cctggcaaaaggtgtcctatgctgtagttagttcttttggtaacccccta
tatgactttgcacatgaccccatcaaaagcattccatcattttcttttct
gagacaaagatgcttagtttacaatccacttgcttaaatactgttatgta
tgtaccttggcattctgtcccaaaggatcctccttaacatctggcatcga
ctttagaacagttatctcaactatagtttcaggatcttagaaaacagttc
aaacttataacctttattctccttatctgtaaatgacggtcactacattt
ataagaattataggtctattatatggcacaggaaattgcatattgaatta
tcatagggatgtcaataaattaatgattcagacattaatctatgactgtt
cctattgacagcacaagagggctttttacattacctgttgaatagataga
tttatgaacagacctattttgggtttgaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_63853376_63853900
seq2: B6Ng01-164F01.b_44_568 (reverse)

seq1  TTCTTTGAGTGATGTATCAATGTCTTCTATTGTATCTTCTAGACCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGTGATGTATCAATGTCTTCTATTGTATCTTCTAGACCTAAGA  50

seq1  TTCTCTCTTCTGCCTCCTGAATTCTGCCAGCTGACGCTCTTATATGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCTGCCTCCTGAATTCTGCCAGCTGACGCTCTTATATGAGTG  100

seq1  TAGGGCATCGAGGGTTTAGCTTGAGACAGCTGATCCTTTTTGTTCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCATCGAGGGTTTAGCTTGAGACAGCTGATCCTTTTTGTTCTGATT  150

seq1  GCTGCAGGAAAAAGGCTTTGTAACCTATACGAATTGTGTATCAAAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGAAAAAGGCTTTGTAACCTATACGAATTGTGTATCAAAACCAA  200

seq1  ATTTAAAAAAAAGGATCACTAAAGACAAATACTCTACTCATACATAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAAGGATCACTAAAGACAAATACTCTACTCATACATAACAG  250

seq1  GAAAAGGGGTAAAGATGATTTGTGTAAATTCTCCTTTAAATTATTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGTAAAGATGATTTGTGTAAATTCTCCTTTAAATTATTTATAA  300

seq1  ACACCTTTAATAATCTTTAGTTAAAACTATATGGAACTCAATATTAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATAATCTTTAGTTAAAACTATATGGAACTCAATATTAGTTG  350

seq1  ATGAATTTACATTTCTTCACTTAAAAGTTGATTGTCATCCTTTCTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTACATTTCTTCACTTAAAAGTTGATTGTCATCCTTTCTTTTTA  400

seq1  ACAACTGTAATCTGTTTTAGTGTTACTTTCACAGGCTTTTGGACAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTAATCTGTTTTAGTGTTACTTTCACAGGCTTTTGGACAAACAT  450

seq1  TTGGAGGACACCAATAATCTTTTGAGATACTATTTGTGTATCGGAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGACACCAATAATCTTTTGAGATACTATTTGTGTATCGGAAATCA  500

seq1  AATTAAAATTTTAAATATGGAATTC  525
      |||||||||||||||||||||||||
seq2  AATTAAAATTTTAAATATGGAATTC  525

seq1: chr6_63675057_63676142
seq2: B6Ng01-164F01.g_65_1146

seq1  GAATTCTCTATTTGCTCTGTACTCCATTTTTAATTGGGTTATATTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTGCTCTGTACTCCATTTTTAATTGGGTTATATTTTGGG  50

seq1  GGAGTGTTAATTTCTTGAATTCTTTACTACCTTAGATATTATCCCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTAATTTCTTGAATTCTTTACTACCTTAGATATTATCCCTCTAT  100

seq1  CAGATGCAGAGTTAATGAAGTTTTTTTTCCCAATCTGTAGGTTGCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGAGTTAATGAAGTTTTTTTTCCCAATCTGTAGGTTGCTGATT  150

seq1  TGTCCTATTGACTATGTCTTTTGCCTTTATTTTCCTCCTTTGCAGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATTGACTATGTCTTTTGCCTTTATTTTCCTCCTTTGCAGCTGTG  200

seq1  CTCTTGTTTCTTGATCTTTCCTCACCATCTGCTTGACTCTTTCGTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTCTTGATCTTTCCTCACCATCTGCTTGACTCTTTCGTTCCAT  250

seq1  TTCTTTCATATTCTACAGCATGAAACAGTAACAATCCTTCTGTTCCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATATTCTACAGCATGAAACAGTAACAATCCTTCTGTTCCAACC  300

seq1  TGGCTTATAGTTCAATTTTTTTAGATATTCTAAACTGATTTCTAGCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATAGTTCAATTTTTTTAGATATTCTAAACTGATTTCTAGCCTAA  350

seq1  GAATAAAATAACTATGCCTTCGTCAGAGGAATCACCTTCCTTCATGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATAACTATGCCTTCGTCAGAGGAATCACCTTCCTTCATGTGTA  400

seq1  TATCACATCCCTAACATGGGATATCAATAATGCACATTCACCCACTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATCCCTAACATGGGATATCAATAATGCACATTCACCCACTTCCA  450

seq1  TTTCCGCTATTCTGAAGGTCTTGATGGAATAATCTTCACAGCCAACTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCTATTCTGAAGGTCTTGATGGAATAATCTTCACAGCCAACTCCG  500

seq1  TGCATCAGCTGAAGTCTGCTGACATATCTTTGCATACACATTCCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTGAAGTCTGCTGACATATCTTTGCATACACATTCCTTTTCC  550

seq1  TGATCACATGCTCCTCTGCTGATTTTAGCCTCCTACCTTTGTATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACATGCTCCTCTGCTGATTTTAGCCTCCTACCTTTGTATTTTATT  600

seq1  CCTGGCAAAAGGTGTCCTATGCTGTAGTTAGTTCTTTTGGTAACCCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAAAGGTGTCCTATGCTGTAGTTAGTTCTTTTGGTAACCCCCTA  650

seq1  TATGACTTTGCACATGACCCCATCAAAAGCATTCCATCATTTTCTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGCACATGACCCCATCAAAAGCATTCCATCATTTTCTTTTCT  700

seq1  GAGACAAAGATGCTTAGTTTACAATCCACTTGCTTAAATACTGTTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGATGCTTAGTTTACAATCCACTTGCTTAAATACTGTTATGTA  750

seq1  TGTACCTTGGCATTCTGTCCCAAAGGATCCTCCTTAACATCTGGCATCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTGGCATTCTGTCCCAAAGGATCCTCCTTAACATCTGGCATCGA  800

seq1  CTTTAGAACAGTTATCTCAACTATAGTTTCAGGATCTTAGAAAACAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAACAGTTATCTCAACTATAGTTTCAGGATCTTAGAAAACAGTTC  850

seq1  AAACTTATAACCTTTATTCTCCTTATCTGTAAAATGACGGTCACTACAAT  900
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AAACTTATAACCTTTATTCTCCTTATCTGT-AAATGACGGTCACTAC-AT  898

seq1  TTATAAGAATTATAGGTCTAATATATGGCACAGGAAATTGCATATTGAAT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATAAGAATTATAGGTCTATTATATGGCACAGGAAATTGCATATTGAAT  948

seq1  TATCATAGGGATGTCAAATAAATAAATGATTCAGACAATAAATCTATGAC  1000
      ||||||||||||||| ||||||| |||||||||||| || ||||||||||
seq2  TATCATAGGGATGTC-AATAAATTAATGATTCAGAC-ATTAATCTATGAC  996

seq1  TGTT-CTAGTGACAGCACAAGAAGGGCTTTATACATTA-CTGTTGAATAG  1048
      |||| ||| |||||||||||| |||||||| ||||||| |||||||||||
seq2  TGTTCCTATTGACAGCACAAG-AGGGCTTTTTACATTACCTGTTGAATAG  1045

seq1  ATAGATTTATGAACAAGAGCTATTTTGGGTTTGAAGTT  1086
      |||||||||||||| ||| |||||||||||||||||||
seq2  ATAGATTTATGAAC-AGACCTATTTTGGGTTTGAAGTT  1082