BAC Information

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BAC

Clone NameB6Ng01-165K17
Chromosome6 (Build37)
Map Location 147,587,072 - 147,587,967
singlet/doubletsinglet
Overlap genenone
Upstream geneSurb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K17.bB6Ng01-165K17.g
ACCDH957665DH957666
length1,012909
definitionDH957665|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K17, 5' end.DH957666|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttgttcatctctgagccccatttttaaatggggttattcaattttctgga
gcccacattcttgagttctttatatatattggatattagtcccctatccg
atttgggataggtaaagatcctttcccaatctgttggtggtctttttgtc
ttattgacggtgtcttttgccttgcagaagctttgcaattttatgaggtc
ccatttgtcaattctcgatcttacagcacaagccattgctgttctattca
ggaatttttcccctgtacccatatcttcgaggcttttgcccactttctcc
tctataagtttcagtgtctctagttttatgtggagttccttaatccactt
agatttgatcttagtacaaggagataagtatggatcaatttgcattcttc
tacatgataactgccagaagtgccagcaccatttgtcgaaaatgctgtct
tttttccactggatggttttagctctcttgtcaaagatcaagtgaccata
ggtgtgtgggttcacctctgggtcttcaattctgttccattggtctactt
gtctgtcactataccagtaccatgcagtttttatcactattgctctgtag
tacagctttaggtccggcatggtgattccaccagaggttctttttccttt
gagaagagttttttgctctcctaggttttttgttatttccagatgaattt
tgcagattgcccttttctaattcgttgaaagaatttgagtttggaatttt
tgatgggggattgctctgaatctgtagatttgctttttggcaagatagcc
catttttactatattgatcctgccgatccatgagcatgggagatctttcc
atcttttgagatcttctttattttcgttcttcataacccttgaagttttt
tatcatacagttcttttcacttccttagtttagagtcacgccaagggtat
ttttatattatttgtggactattggagaagggtgtgtttccctaattttc
catcaccccgat
gaattcagagaagaaaaaggaggcagatcaaaccacaccaattagaactg
gacaggatgcactctggacacagagtgaatggaggtctgtaggactcttg
ctggtcatctgccaacttagcccaggagtccattcatggttggccaacgt
gctatcaccccagagacaaggtgtcaccaatacctgatactcttcattgg
gcatgatccaacaatccaagatgaagttgtaaacacatctttctggagac
tttagcttaggtctcagtcaatcctgacacttaggagattctgaggggca
agtgtggaacagagctcatctgcattctacttcaaatccctaagtaagag
atcataaagacactgggcaaggagatggctggggaagtagatgtctcagg
ctacactatgaagtgatgcaaccaagtgtgtgagtgcacttgtgtgtgtg
tgtgttgttgagtgtggctttctgtcctcagaggcataccacaggcacat
gggccctgcttttgctgaagagcggtgacatcttacttgggtccacacag
aaataaaagcagggtgaaagctggcttctctgccacctttctgtggcacc
tccttttggggccagagtcctgttagtttttacacatttttttagtcact
aagaatagcttctgccaaatagctcattcccatttttaggctaaaacaca
caaaagacagtgctaaacctgctgtcaccctggatttctagaagaccatt
ctcacaggacagtctgtcccctggataggaacttccatctttggtgagga
ggctgtagccagaaacaggtcccactgccagaaaccaaaacttttcccct
ccccgctcacccatcatgcttgaaaaagacaggtgacagtccacaactct
tcaactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147587072_147587967
seq2: B6Ng01-165K17.g_73_981 (reverse)

seq1  GGGAGTTGATGGACTGTGGACTGTCA-CTGTCTTCT--CAGCATGATGGG  47
      | ||||||| |   |||||||||||| ||||||| |   |||||||||||
seq2  GAGAGTTGAAGAGTTGTGGACTGTCACCTGTCTTTTTCAAGCATGATGGG  50

seq1  TGGGC-GGGAGGGG-ACAGTTT--GGTTCTTGCAGTGGGACCTGTTTCTG  93
      || || |||||||| | |||||  | |||| |||||||||||||||||||
seq2  TGAGCGGGGAGGGGAAAAGTTTTGGTTTCTGGCAGTGGGACCTGTTTCTG  100

seq1  GCTACAGCCTCCTCAACAAAGATGGAAGTTCCTATCCAGGGGACAGACTG  143
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTACAGCCTCCTCACCAAAGATGGAAGTTCCTATCCAGGGGACAGACTG  150

seq1  TCCTGTGAGAATGGTCTTCTAG-AATCCAGGGTGACAGCAGGTTTAGCAC  192
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTGTGAGAATGGTCTTCTAGAAATCCAGGGTGACAGCAGGTTTAGCAC  200

seq1  TGTC-TTTGTGTGTTTTAGCCT-TAAATGGGAATGAGCTATTTGGCAGAA  240
      |||| |||||||||||||||||  ||||||||||||||||||||||||||
seq2  TGTCTTTTGTGTGTTTTAGCCTAAAAATGGGAATGAGCTATTTGGCAGAA  250

seq1  GCTATTCTTAGTGACT-AAAAAATGTGT-AAAACTAACAGGACTCTGGCC  288
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  GCTATTCTTAGTGACTAAAAAAATGTGTAAAAACTAACAGGACTCTGGCC  300

seq1  CCAAAAGGAGGTGCCACAGAAAGGTGGCAGAGAAGCCAGC-TTCACCCTG  337
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAAAAGGAGGTGCCACAGAAAGGTGGCAGAGAAGCCAGCTTTCACCCTG  350

seq1  CTTTTATTTCTGTGTGGACCCAAGTAAGATGTCACCGCTCTTCAGCAAAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTCTGTGTGGACCCAAGTAAGATGTCACCGCTCTTCAGCAAAA  400

seq1  GCAGGGCCCATGTGCCTGTGGTATGCCTCTGAGGACAGAAAGCCACACTC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCCATGTGCCTGTGGTATGCCTCTGAGGACAGAAAGCCACACTC  450

seq1  AACAACACACACACACACAAGTGCACTCACACACTTGGTTGCATCACTTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACACACACACACAAGTGCACTCACACACTTGGTTGCATCACTTC  500

seq1  ATAGTGTAGCCTGAGACATCTACTTCCCCAGCCATCTCCTTGCCCAGTGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTAGCCTGAGACATCTACTTCCCCAGCCATCTCCTTGCCCAGTGT  550

seq1  CTTTATGATCTCTTACTTAGGGATTTGAAGTAGAATGCAGATGAGCTCTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATCTCTTACTTAGGGATTTGAAGTAGAATGCAGATGAGCTCTG  600

seq1  TTCCACACTTGCCCCTCAGAATCTCCTAAGTGTCAGGATTGACTGAGACC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACTTGCCCCTCAGAATCTCCTAAGTGTCAGGATTGACTGAGACC  650

seq1  TAAGCTAAAGTCTCCAGAAAGATGTGTTTACAACTTCATCTTGGATTGTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAAGTCTCCAGAAAGATGTGTTTACAACTTCATCTTGGATTGTT  700

seq1  GGATCATGCCCAATGAAGAGTATCAGGTATTGGTGACACCTTGTCTCTGG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGCCCAATGAAGAGTATCAGGTATTGGTGACACCTTGTCTCTGG  750

seq1  GGTGATAGCACGTTGGCCAACCATGAATGGACTCCTGGGCTAAGTTGGCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGCACGTTGGCCAACCATGAATGGACTCCTGGGCTAAGTTGGCA  800

seq1  GATGACCAGCAAGAGTCCTACAGACCTCCATTCACTCTGTGTCCAGAGTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAGCAAGAGTCCTACAGACCTCCATTCACTCTGTGTCCAGAGTG  850

seq1  CATCCTGTCCAGTTCTAATTGGTGTGGTTTGATCTGCCTCCTTTTTCTTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTCCAGTTCTAATTGGTGTGGTTTGATCTGCCTCCTTTTTCTTC  900

seq1  TCTGAATTC  896
      |||||||||
seq2  TCTGAATTC  909