BAC Information

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BAC

Clone NameB6Ng01-166E15
Chromosome6 (Build37)
Map Location 98,858,356 - 99,038,675
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E15.bB6Ng01-166E15.g
ACCDH958109DH958110
length1,0901,126
definitionDH958109|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E15, 5' end.DH958110|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,858,356 - 98,859,275)(99,037,540 - 99,038,675)
sequence
gaattcactttgtaaaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgagccaccatgcccggcta
tagctggatctttaggtagagctatttccaattttctgagaaactgtcag
attgatttccagagtggttgtgcaaatcccaccagctaaggagtagcacc
ccctttctccacatcctcaccagcatatactgcagcttgaaaatttttta
ttttagccatgctggttggagtgaggtggaatctcaggatccttttgatt
tgcatttccctgatgtaaggatgttgaacatttctttaagtgtttcttgg
cctctgttgagaactctctgtttagctctgtactccattttttttttttt
aaattgggttatttggtttgctggagtctaacttcttgagttcattatat
attttggatattagccctctattggatgtagggttagtgaagatcttttc
ccagactgtaggctgctgttttgtcctcttgacagtgtcctttgccttac
agaagcttttcaggaagttaaagaagaaaggtccaagtgaggatgcttca
atcacacttagaagggggaacaaaattcctgcaggttttcctctgatctc
aatgtgcatcccatggcacagacacaccatccctctccaatacaaaaaaa
tgaatgtgagaacatagtgctgatttagacactggagaggccattctctt
tagtgttatagactttaacccattgtcttttcacctctgtcgcctgtaag
ataaatctgctgtcattcttctcttatttctctacaaacttatatgtttt
ccttgctgctttaaactgctcccttcccactggtttcattatgatgggac
ttgcagttgactaagcttcttttgagtaggaatataactcatgcagactt
gagggaaggctcatcattatttcttctagagtttttttttttttaaatgc
ctgaaacccaactttggaggtttcttttctgagtgctccactccttcggg
ctccaaggtcattatgttccccacttcgtccttccttttc
gaattcctcccatccacattggcaatcagagggtgctgtcactaggtagg
tcttgtgtaggcagccctattgttgagatttcatggctgcagtatcccca
ccgccgacatgtcaaggacacactctcttgcatcctgttcctggctcttg
gaatcttcccaccctgctcttctgagatgttcccctgagccttccacata
ggacttgcattattgtaagtgtgtcaattggagctaggcagtgcctggcc
acttctttacatttgacagctgtgggtctcggtaatattcctcatatcct
gcaggaagcttgttgatgaaggatgagagagatgactacctgatttttgc
aattacttctcaaaagaaaatctttttaacgtagttaaaccaaaatacag
atggcttgtcccctcacccctgttggattgaagaaggcctggggaccgag
agacaggaatgtctgaatccgtgtcctcagagtaaatgggtggcacaagg
tgaccaaagaggcaagaacagagggagagagtgacgagtgtgcctgggct
tctgagtctctgtcccatgaagtaggagcatcctagctgctgcttggatc
aaagcagtattggcctcctgggtatgaggatgtcatcgaactctgccatg
cggaactggcttgcaaacaagggcaggtagagtggagatgggtgtctggt
gacctgggacagagaacaggaagggtgggtaggcctggcgatgcgaccat
cactcttgagcatcctgggaatgaaaagattgggtacaaaagaggagcag
atccttttctgtggggaacagagggctgaggcgttcagagtgtggcacca
cgaggcagctgtccctgccctgaacacagaaagaaccaaggccactcctg
tgttttggctcccaagacctcacatgcgtgtgccaggactctggtcacca
ccgtctggtgctaatcagtgagcttggtgcagtgtgactatctggttctc
tgaaacaggtttgtttgtttttgttttctgccctgccacctcagcacatt
gcaaacttgagccaagtaccatttctttgttttccacattgaatccagaa
ttataactttcccaacctcccgacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98858356_98859275
seq2: B6Ng01-166E15.b_225_1133

seq1  CCAGCTAAGGAGTAGCACCCCCTTTCTCCACATCCTCACCAGCATATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAGGAGTAGCACCCCCTTTCTCCACATCCTCACCAGCATATACT  50

seq1  GCAGCTTGAAAATTTTTTATTTTAGCCATGCTGGTTGGAGTGAGGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGAAAATTTTTTATTTTAGCCATGCTGGTTGGAGTGAGGTGGAA  100

seq1  TCTCAGGATCCTTTTGATTTGCATTTCCCTGATGTAAGGATGTTGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGATCCTTTTGATTTGCATTTCCCTGATGTAAGGATGTTGAACAT  150

seq1  TTCTTTAAGTGTTTCTTGGCCTCTGTTGAGAACTCTCTGTTTAGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGTGTTTCTTGGCCTCTGTTGAGAACTCTCTGTTTAGCTCTGT  200

seq1  ACTCCATTTTTTTTTTTTTAAATTGGGTTATTTGGTTTGCTGGAGTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTTTTTTTTTTTAAATTGGGTTATTTGGTTTGCTGGAGTCTAA  250

seq1  CTTCTTGAGTTCATTATATATTTTGGATATTAGCCCTCTATTGGATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAGTTCATTATATATTTTGGATATTAGCCCTCTATTGGATGTAG  300

seq1  GGTTAGTGAAGATCTTTTCCCAGACTGTAGGCTGCTGTTTTGTCCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGAAGATCTTTTCCCAGACTGTAGGCTGCTGTTTTGTCCTCTTG  350

seq1  ACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGGAAGTTAAAGAAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGGAAGTTAAAGAAGAAAGG  400

seq1  TCCAAGTGAGGATGCTTCAATCACACTTAGAAGGGGGAACAAAATTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGAGGATGCTTCAATCACACTTAGAAGGGGGAACAAAATTCCTG  450

seq1  CAGGTTTTCCTCTGATCTCAATGTGCATCCCATGGCACAGACACACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTCCTCTGATCTCAATGTGCATCCCATGGCACAGACACACCATC  500

seq1  CCTCTCCAATACAAAAAAATGAATGTGAGAACATAGTGCTGATTTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAATACAAAAAAATGAATGTGAGAACATAGTGCTGATTTAGACA  550

seq1  CTGGAGAGGCCATTCTCTTTAGTGTTATAGACTTTAACCCATTGTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGCCATTCTCTTTAGTGTTATAGACTTTAACCCATTGTCTTTT  600

seq1  CACCTCTGTCGCCTGTAAGATAAATCTGCTGTCATTCTTCTCTTAATTTC  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACCTCTGTCGCCTGTAAGATAAATCTGCTGTCATTCTTCTCTT-ATTTC  649

seq1  TCTACAAAACTTATATGTTTTCCTTGCTGCTTTAAAACTGCTCCCTTCCC  700
      ||||| ||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TCTAC-AAACTTATATGTTTTCCTTGCTGCTTT-AAACTGCTCCCTT-CC  696

seq1  CACTGGTTTCATTATGATGGGACTTGCAGTTGACTAAGCTTCTTTTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTTCATTATGATGGGACTTGCAGTTGACTAAGCTTCTTTTGAGT  746

seq1  AGGAATATAACTCATGCAGACTTGAGGGAAGGGCTCATCATTATATCTTC  800
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AGGAATATAACTCATGCAGACTTGAGGGAA-GGCTCATCATTATTTCTTC  795

seq1  TAAGAGTTTTTTTTTTTTTTTAAATGCCTGATACACTACTTTGGAGATTC  850
      | ||||  ||||||||||||||||||||||| || | ||||||||| || 
seq2  T-AGAG--TTTTTTTTTTTTTAAATGCCTGAAACCCAACTTTGGAGGTT-  841

seq1  TCTTTTCTTGAGTGCCTCACTTCTTCTGACTCCTAGGTCCATTATGTTCC  900
      ||||||| |||||||  |||| |||| | |||| |||| |||||||||||
seq2  TCTTTTC-TGAGTGCTCCACTCCTTCGGGCTCCAAGGT-CATTATGTTCC  889

seq1  CCACTTCTTCCTTCCCTTTC  920
      ||||||| ||||||| ||||
seq2  CCACTTCGTCCTTCCTTTTC  909

seq1: chr6_99037540_99038675
seq2: B6Ng01-166E15.g_68_1193 (reverse)

seq1  CTGTCGGGAGGTGGGGAAAGTTTTATAATTCTTGATTCAAAGTGGAAAAA  50
      |||||||||||| |||||||  |||||||||| ||||||| |||| ||||
seq2  CTGTCGGGAGGTTGGGAAAG--TTATAATTCTGGATTCAATGTGG-AAAA  47

seq1  CAAAGAAATGTGACTT-GCTCAAGGTCGCAAATGTGCTGA-GTGGCAGGG  98
      ||||||||||  |||| ||||||| | || |||||||||| |||||||||
seq2  CAAAGAAATGGTACTTGGCTCAAGTTTGC-AATGTGCTGAGGTGGCAGGG  96

seq1  CAGAAAAACAAAAACAAACAAACCTTGTTTCCAGAGAACCAGATAGTCAC  148
      ||| |||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CAG-AAAACAAAAACAAACAAACC-TGTTT-CAGAGAACCAGATAGTCAC  143

seq1  ACTGCACCAAGCTCACTGATTAGCACCAAGACGGTGGTGACCAGGAGTCC  198
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  ACTGCACCAAGCTCACTGATTAGCACC-AGACGGTGGTGACCA-GAGTCC  191

seq1  TGGCACACGCATGTGAGGTCTTTGGGAGCCAAAAACACAGGAGTGGCCTT  248
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TGGCACACGCATGTGAGGTC-TTGGGAGCC-AAAACACAGGAGTGGCCTT  239

seq1  GGTTCCTTCTGTGTTCAGGGCAGGGACAGCTGCCTCGTGGTGCCACACTC  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCTGTGTTCAGGGCAGGGACAGCTGCCTCGTGGTGCCACACTC  289

seq1  TGAACGCCTCAGCCCTTCTGTTCCCCACAGAAAAGGATCTGCTCCTCTTT  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAACGCCTCAGCCC-TCTGTTCCCCACAGAAAAGGATCTGCTCCTCTTT  338

seq1  TGTACCCAATCTTTTCATTCCCAGGATGCTCAAGAGTGATGGTCGCATCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAATCTTTTCATTCCCAGGATGCTCAAGAGTGATGGTCGCATCG  388

seq1  CCAGGCCTACCCACCCTTCCTGTTCTCTGTCCCAGGTCACCAGACACCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTACCCACCCTTCCTGTTCTCTGTCCCAGGTCACCAGACACCCA  438

seq1  TCTCCACTCTACCTGCCCTTGTTTGCAAGCCAGTTCCGCATGGCAGAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTCTACCTGCCCTTGTTTGCAAGCCAGTTCCGCATGGCAGAGTT  488

seq1  CGATGACATCCTCATACCCAGGAGGCCAATACTGCTTTGATCCAAGCAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGACATCCTCATACCCAGGAGGCCAATACTGCTTTGATCCAAGCAGC  538

seq1  AGCTAGGATGCTCCTACTTCATGGGACAGAGACTCAGAAGCCCAGGCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGATGCTCCTACTTCATGGGACAGAGACTCAGAAGCCCAGGCACA  588

seq1  CTCGTCACTCTCTCCCTCTGTTCTTGCCTCTTTGGTCACCTTGTGCCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCACTCTCTCCCTCTGTTCTTGCCTCTTTGGTCACCTTGTGCCACC  638

seq1  CATTTACTCTGAGGACACGGATTCAGACATTCCTGTCTCTCGGTCCCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCTGAGGACACGGATTCAGACATTCCTGTCTCTCGGTCCCCAG  688

seq1  GCCTTCTTCAATCCAACAGGGGTGAGGGGACAAGCCATCTGTATTTTGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTCAATCCAACAGGGGTGAGGGGACAAGCCATCTGTATTTTGGT  738

seq1  TTAACTACGTTAAAAAGATTTTCTTTTGAGAAGTAATTGCAAAAATCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACGTTAAAAAGATTTTCTTTTGAGAAGTAATTGCAAAAATCAGG  788

seq1  TAGTCATCTCTCTCATCCTTCATCAACAAGCTTCCTGCAGGATATGAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTCTCTCATCCTTCATCAACAAGCTTCCTGCAGGATATGAGGA  838

seq1  ATATTACCGAGACCCACAGCTGTCAAATGTAAAGAAGTGGCCAGGCACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCGAGACCCACAGCTGTCAAATGTAAAGAAGTGGCCAGGCACTG  888

seq1  CCTAGCTCCAATTGACACACTTACAATAATGCAAGTCCTATGTGGAAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCCAATTGACACACTTACAATAATGCAAGTCCTATGTGGAAGGC  938

seq1  TCAGGGGAACATCTCAGAAGAGCAGGGTGGGAAGATTCCAAGAGCCAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGAACATCTCAGAAGAGCAGGGTGGGAAGATTCCAAGAGCCAGGA  988

seq1  ACAGGATGCAAGAGAGTGTGTCCTTGACATGTCGGCGGTGGGGATACTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGCAAGAGAGTGTGTCCTTGACATGTCGGCGGTGGGGATACTGC  1038

seq1  AGCCATGAAATCTCAACAATAGGGCTGCCTACACAAGACCTACCTAGTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGAAATCTCAACAATAGGGCTGCCTACACAAGACCTACCTAGTGA  1088

seq1  CAGCACCCTCTGATTGCCAATGTGGATGGGAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCTCTGATTGCCAATGTGGATGGGAGGAATTC  1126