BAC Information

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BAC

Clone NameB6Ng01-167J11
ChromosomeX (Build37)6 (Build37)
Map Location 75,088,884 - 75,088,94819,772,642 - 19,773,784
singlet/doubletsingletsinglet
Overlap genePbsn
Upstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893, LOC667606, Prkx
Downstream geneOTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167J11.bB6Ng01-167J11.g
ACCDH959043DH959044
length2161,126
definitionDH959043|Mus musculus domesticus DNA, BAC clone: B6Ng01-167J11, 5' end.DH959044|Mus musculus domesticus DNA, BAC clone: B6Ng01-167J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,088,884 - 75,088,948)(19,772,642 - 19,773,784)
sequence
gaattcatcataatcatcaaaatcatacaattatatatatatatatgtat
atgtgtatatgtgtgtgtatatatgtatatatatgtatatatgtacttat
gtacacatgaatatatgtatgtatatattatgtatatatgtatatatgta
tatatgatgtatatatgtatatgtgtacatatgtatatgtgtacatatgt
gtatatgtgtatacac
gaattcttattcagtaacagcagtagtggaaaaaagaaagcttcaataag
gatcccaaacactactcatcatgagtcatgatggttaaacatgagcataa
atcttttatattcgaatatttgttttcaactatactaaagcatgaattca
aaacataatttatacactataacatatacttgagatttaaataacatttg
gaaatatctaaatttgtatttaaaataacttatcataccaaatgcattag
taataaaatcattaataccattattagatatttatatgtctttttttaca
acaagaatttgctgaatattctgaatttattttgaaaagttttgtcttac
attataaagtagaaatttgaatgtgactatataaatttagtttaaatttg
catgtatattacaaaaactccagcctctaaataaatttccatataaaata
gtttgtaagaatatttacaaggaacaagtgcctaggtctttgtaacttga
ttttgccactaatatttatgaatcaggggacagaacttccctaatttcta
agggcctcacacaatgaggctggtgtctagttgttttttagtatgattta
taatcatgaatactaggattctttgataagttgctcaaaactagagaata
aaataaccaataaccacagagatcatagagtatatcaaaagggcatggaa
gcccagatggagcatccctgagagtccaactatggagaaggaagaaatga
ggagaaaaacccttcagaacattcctaggggtatatactggcttcctgga
cagctagggtaactgaaaacaaatgaacaaatgaaaaacaaaactgtttc
aaaataaaacagtacaaacaggtatggaattacaggtcagtagtagagca
tttatcaagtatatgaaagtctttaattcaaacctctatactgtaaaata
aattagtaaagcaaaagtgggaaatggttttaagacctgatttctaatgt
ctctatatgacttatatgaggaatcctgatctgtatgagtgatcagattt
acacataaccaatagcactgagatgtaagtactgaaatacagcttaacta
cacttcaagtgatggcataaatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_75088884_75088948
seq2: B6Ng01-167J11.b_73_124 (reverse)

seq1  --TATATACACATATATACACATATTGAGGAAAACTCTCTGATTTTATAT  48
        |||||||| ||||| ||||| ||      | || |         ||||
seq2  TATATATACATATATACACACACAT------ATACAC---------ATAT  35

seq1  ACATATATATATATATA  65
      |||||||||||||||||
seq2  ACATATATATATATATA  52

seq1: chr6_19772642_19773784
seq2: B6Ng01-167J11.g_65_1190 (reverse)

seq1  TCAGATTTATGCCCATCACCTTGAAAGTGTTAGTTTAGCTGTATTTCAGT  50
      ||||||||||| |||||| |||| ||||| ||||| ||||||||||||||
seq2  TCAGATTTATG-CCATCA-CTTG-AAGTG-TAGTTAAGCTGTATTTCAGT  46

seq1  ACTCTACAATCTCAGTGCTTATTGGTTATTGTGTAAATCTGATTCACTCA  100
      ||| ||| |||||||||| ||||||||| ||||||||||||| |||||||
seq2  ACT-TAC-ATCTCAGTGC-TATTGGTTA-TGTGTAAATCTGA-TCACTCA  91

seq1  TTACAGAATTCCAGGATTCCTCATTATAAGTCATATTAGAGAACAATTAG  150
       ||||||    |||||||||||| ||||||||||| ||||||   |||||
seq2  -TACAGA---TCAGGATTCCTCA-TATAAGTCATA-TAGAGA--CATTAG  133

seq1  AAATCAGGTCTTAAAACCATTTCCCACTTTTGCTTTACTAATTTATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGTCTTAAAACCATTTCCCACTTTTGCTTTACTAATTTATTTTA  183

seq1  CAGTATAGAGGTTTGAATTAAAGACTTTCATATACTTGATAAATGCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGAGGTTTGAATTAAAGACTTTCATATACTTGATAAATGCTCTA  233

seq1  CTACTGACCTGTAATTCCATACCTGTTTGTACTGTTTTATTTTGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACCTGTAATTCCATACCTGTTTGTACTGTTTTATTTTGAAACAG  283

seq1  TTTTGTTTTTCATTTGTTCATTTGTTTTCAGTTACCCTAGCTGTCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCATTTGTTCATTTGTTTTCAGTTACCCTAGCTGTCCAGGA  333

seq1  AGCCAGTATATACCCCTAGGAATGTTCTGAAGGGTTTTTCTCCTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTATATACCCCTAGGAATGTTCTGAAGGGTTTTTCTCCTCATTTC  383

seq1  TTCCTTCTCCATAGTTGGACTCTCAGGGATGCTCCATCTGGGCTTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCATAGTTGGACTCTCAGGGATGCTCCATCTGGGCTTCCATG  433

seq1  CCCTTTTGATATACTCTATGATCTCTGTGGTTATTGGTTATTTTATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGATATACTCTATGATCTCTGTGGTTATTGGTTATTTTATTCTC  483

seq1  TAGTTTTGAGCAACTTATCAAAGAATCCTAGTATTCATGATTATAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGAGCAACTTATCAAAGAATCCTAGTATTCATGATTATAAATCA  533

seq1  TACTAAAAAACAACTAGACACCAGCCTCATTGTGTGAGGCCCTTAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAAAACAACTAGACACCAGCCTCATTGTGTGAGGCCCTTAGAAAT  583

seq1  TAGGGAAGTTCTGTCCCCTGATTCATAAATATTAGTGGCAAAATCAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGTTCTGTCCCCTGATTCATAAATATTAGTGGCAAAATCAAGTT  633

seq1  ACAAAGACCTAGGCACTTGTTCCTTGTAAATATTCTTACAAACTATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCTAGGCACTTGTTCCTTGTAAATATTCTTACAAACTATTTTA  683

seq1  TATGGAAATTTATTTAGAGGCTGGAGTTTTTGTAATATACATGCAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAATTTATTTAGAGGCTGGAGTTTTTGTAATATACATGCAAATTT  733

seq1  AAACTAAATTTATATAGTCACATTCAAATTTCTACTTTATAATGTAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATTTATATAGTCACATTCAAATTTCTACTTTATAATGTAAGAC  783

seq1  AAAACTTTTCAAAATAAATTCAGAATATTCAGCAAATTCTTGTTGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTCAAAATAAATTCAGAATATTCAGCAAATTCTTGTTGTAAAA  833

seq1  AAAGACATATAAATATCTAATAATGGTATTAATGATTTTATTACTAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATATAAATATCTAATAATGGTATTAATGATTTTATTACTAATGC  883

seq1  ATTTGGTATGATAAGTTATTTTAAATACAAATTTAGATATTTCCAAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATGATAAGTTATTTTAAATACAAATTTAGATATTTCCAAATGT  933

seq1  TATTTAAATCTCAAGTATATGTTATAGTGTATAAATTATGTTTTGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATCTCAAGTATATGTTATAGTGTATAAATTATGTTTTGAATTC  983

seq1  ATGCTTTAGTATAGTTGAAAACAAATATTCGAATATAAAAGATTTATGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAGTATAGTTGAAAACAAATATTCGAATATAAAAGATTTATGCT  1033

seq1  CATGTTTAACCATCATGACTCATGATGAGTAGTGTTTGGGATCCTTATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAACCATCATGACTCATGATGAGTAGTGTTTGGGATCCTTATTG  1083

seq1  AAGCTTTCTTTTTTCCACTACTGCTGTTACTGAATAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTTTTTTCCACTACTGCTGTTACTGAATAAGAATTC  1126