BAC Information

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BAC

Clone NameB6Ng01-167P08
Chromosome6 (Build37)1 (Build37)
Map Location 110,603,746 - 110,604,77822,901,092 - 22,901,269
singlet/doubletsingletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167P08.bB6Ng01-167P08.g
ACCDH959323DH959324
length1,029458
definitionDH959323|Mus musculus domesticus DNA, BAC clone: B6Ng01-167P08, 5' end.DH959324|Mus musculus domesticus DNA, BAC clone: B6Ng01-167P08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,603,746 - 110,604,778)(22,901,092 - 22,901,269)
sequence
gaattctccatctctgagtgttgtgctttcttcatggcacagctgctgct
gcttgttctgggtgctgatgaaaggtatcagctaagccacaaagaaaggc
tcggtctggcagcatgactacttagaggacggtatttctatttgttgaaa
tagtgaagcatgtttactgtgttttaagctggacttatgcaagggtggca
attcagacagacatcgcagggaaggttctcattagaaaacccgtcctgcc
tctcagtttgcaggcaggagtagacagccaagttcaagaattgcatctaa
gtttacacttattatgtgtcaattttgttttcttgctgatttccttgaac
atgaattacagttatcatcagtgactgtatctttcaaattggcataataa
aaatattcctgggcacacaagatgacttagaaggtgtaggaactagtttt
cagtgctgatgacatgagagatctgtgggacccactgttgatgtggagaa
ccaagtccaacgagcttttctctcacttctgcataagtaccattgcatgt
acacacccacacacatacatgtgtgcacactttatacatataataataaa
taaataattttaaaatcgtacccatctgctagaataatattgaggattac
gtgtaaatggtttaatgctgactttaacatgccctgagtgttcaatgaat
ttcattattcttctgttttcctactttcctattttaagttttcctactgc
aaaataatcataagtattaatttttctggagaataggtataataactata
atgtgttgtactcttctctctgtttctttcctggaaaggtctctctataa
catcatttatattatattatgaatagacacatatgtatatatatatatat
atgtatgtatggatatgtgggtacacatatttacttcaaaacttttggac
atacacataatatgtatctagatagataggtagattagatgatagatgaa
gatagatatgataggacaagattgaattt
tgatagaagtaacatatgtgtgtatatatttaatacatatatatatgtgt
gtattattcaatacaatatattatagtgatatatatatatatataataga
atgtgtggctatgtatcacaataaagtattatatgtatatgtatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
aaatcacacacacacacacactcgctctctcacgcgcgcgcgcgcgcaca
cacacacacacgcacgcgcgcgggcgcgggcgggggggcgggcgcccgcc
gcgcgcgcgcgagagagagacatatagatatatatacacatatagacaca
catatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110603746_110604778
seq2: B6Ng01-167P08.b_48_1076

seq1  GAATTCTCCATCTCTGAGTGTTGTGCTTTCTTCATGGCACAGCTGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTCTGAGTGTTGTGCTTTCTTCATGGCACAGCTGCTGCT  50

seq1  GCTTGTTCTGGGTGCTGATGAAAGGTATCAGCTAAGCCACAAAGAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCTGGGTGCTGATGAAAGGTATCAGCTAAGCCACAAAGAAAGGC  100

seq1  TCGGTCTGGCAGCATGACTACTTAGAGGACGGTATTTCTATTTGTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCTGGCAGCATGACTACTTAGAGGACGGTATTTCTATTTGTTGAAA  150

seq1  TAGTGAAGCATGTTTACTGTGTTTTAAGCTGGACTTATGCAAGGGTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGCATGTTTACTGTGTTTTAAGCTGGACTTATGCAAGGGTGGCA  200

seq1  ATTCAGACAGACATCGCAGGGAAGGTTCTCATTAGAAAACCCGTCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACAGACATCGCAGGGAAGGTTCTCATTAGAAAACCCGTCCTGCC  250

seq1  TCTCAGTTTGCAGGCAGGAGTAGACAGCCAAGTTCAAGAATTGCATCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTGCAGGCAGGAGTAGACAGCCAAGTTCAAGAATTGCATCTAA  300

seq1  GTTTACACTTATTATGTGTCAATTTTGTTTTCTTGCTGATTTCCTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACACTTATTATGTGTCAATTTTGTTTTCTTGCTGATTTCCTTGAAC  350

seq1  ATGAATTACAGTTATCATCAGTGACTGTATCTTTCAAATTGGCATAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACAGTTATCATCAGTGACTGTATCTTTCAAATTGGCATAATAA  400

seq1  AAATATTCCTGGGCACACAAGATGACTTAGAAGGTGTAGGAACTAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCTGGGCACACAAGATGACTTAGAAGGTGTAGGAACTAGTTTT  450

seq1  CAGTGCTGATGACATGAGAGATCTGTGGGACCCACTGTTGATGTGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGATGACATGAGAGATCTGTGGGACCCACTGTTGATGTGGAGAA  500

seq1  CCAAGTCCAACGAGCTTTTCTCTCACTTCTGCATAAGTACCATTGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCAACGAGCTTTTCTCTCACTTCTGCATAAGTACCATTGCATGT  550

seq1  ACACACCCACACACATACATGTGTGCACACTTTATACATATAATAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCACACACATACATGTGTGCACACTTTATACATATAATAATAAA  600

seq1  TAAATAATTTTAAAATCGTACCCATCTGCTAGAATAATATTGAGGATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTTAAAATCGTACCCATCTGCTAGAATAATATTGAGGATTAC  650

seq1  GTGTAAATGGTTTAATGCTGACTTTAACATGCCCTGAGTGTTCAATGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATGGTTTAATGCTGACTTTAACATGCCCTGAGTGTTCAATGAAT  700

seq1  TTCATTATTCTTCTGTTTTCCTACTTTCCTATTTTAAGTTTTCCTACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTCTTCTGTTTTCCTACTTTCCTATTTTAAGTTTTCCTACTGC  750

seq1  AAAATAATCATAAGTATTAATTTTTCTGGAGAATAGGTATAATAACTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCATAAGTATTAATTTTTCTGGAGAATAGGTATAATAACTATA  800

seq1  ATGTGTTGTACTCTTCTCTCTGTTTCTTTCCTGG-AAGGTCTCTCTATAA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTGTTGTACTCTTCTCTCTGTTTCTTTCCTGGAAAGGTCTCTCTATAA  850

seq1  CATCATTTATATTATATTATGAATAGACACATATGTATATATATATATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTATATTATATTATGAATAGACACATATGTATATATATATATAT  900

seq1  ATGTATGTATGGATATGTGGGTACACATATATACTTCAAAACATATGGAC  949
      |||||||||||||||||||||||||||||| ||||||||||| | |||||
seq2  ATGTATGTATGGATATGTGGGTACACATATTTACTTCAAAACTTTTGGAC  950

seq1  ATACACATAAATATGTATCTAGATAGATAGATAGATAGATAGATAGATAG  999
      |||||||| ||||||||||||||||||||| |||||   ||||| |||||
seq2  ATACACAT-AATATGTATCTAGATAGATAGGTAGAT---TAGAT-GATAG  995

seq1  AT--AGATAGATA-GATAGGGACAGAGATTGAGATTT  1033
      ||  ||||||||| |||| ||||| ||||||| ||||
seq2  ATGAAGATAGATATGATA-GGACA-AGATTGA-ATTT  1029

seq1: chr1_22901092_22901269
seq2: B6Ng01-167P08.g_206_534 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TATATATGTGTGTCTATATGTGTATATATATCTATATGTCTCTCTCTCGC  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCGCGCGCGGCGGGCGCCCGCCCCCCCGCCCGCGCCCGCGCGCGTGCGTG  100

seq1  --------------------------------------TATATATGTGTG  12
                                            | | | ||||||
seq2  TGTGTGTGTGTGCGCGCGCGCGCGCGTGAGAGAGCGAGTGTGTGTGTGTG  150

seq1  TGTG---TATATATATATGTATATATATATATACTCTTGTACCTTATATG  59
      ||||   ||||||||||| ||||||||||||||    | ||   ||||| 
seq2  TGTGATTTATATATATATATATATATATATATATATATATA---TATATA  197

seq1  TGTGTGTATATATATATATATATATTCTTGTACCT-TATATATATATATG  108
      | | | |||||||||||||||||||   | ||  | ||||||||||||| 
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  247

seq1  TATATATATATATGTATATGTATATACATATATACATATATATATATATA  158
      ||||||||||||| ||||| |||||| ||||||| |||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  297

seq1  TATATATACATATATATATA------------  178
      |||||||| |||||||||||            
seq2  TATATATATATATATATATACATATACATATA  329