BAC Information

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BAC

Clone NameB6Ng01-173O01
Chromosome6 (Build37)
Map Location 36,304,452 - 36,305,589
singlet/doubletsinglet
Overlap gene9330158H04Rik
Upstream geneMtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173O01.b
ACCGA002109
length1,154
definitionB6Ng01-173O01.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttatgcattgctgcattttatcatcttctgcttgagacttgaa
cacatcaatcatggttattttaaaatgcttctctggaatgttgctatcat
caccaacttggtactgctggttactttgtctcttgactatgtactgcttt
ctgtttgaatttttagatgcccttacattttagctaattacttggcacag
actgtaaggcactagaactggaataattagtatttatgcctgttattcac
atgcttcttttgttagacattcagagtggagcgttgagttaatttgggaa
aatgtaaggctattttcgggatttgctgtcatccctttgatgttatcatg
tcattcatgcaaggattaatgtggacacgagcgtttctttagatgcattc
aacagagtttattattctttttcatccatcacaatatttctctgttacct
ataattcataatcataactaacttttctactttctagataattggaaaat
tacagatatcttcctgtaattaattaattttcattgttggagaatgtact
gtgcctgatttccatcacttgaaatttattaacccttactttatgaccaa
gaatgtgatctgtcttaataaatgttcctaaaaggttatgtgcatggtat
tttatcagaaatatttggctgataatgtatcatattctcaatgcctttgt
ttctgccttatattagctattgaaataaactattgttcctaaatatagtc
atgaatattcttatttttccttttatatctatttactagacatttttgaa
aggttttctattatatggataaacatttgagtttgatatactttcagtgt
gaattgatttgcataaaaatacattttcttcattaatttctttatgaaat
gtcacattttatagttgtttaagttgatatataagtacatctcactataa
gactgacatattggagaaaaagtatgataagcttgataattaaagtacaa
aaacacccagaattctgatcttgcagcagaacaagaacacttctggcggg
agtacagacaaaatcaagcgaacccagtgtagttaattcccactgttaca
aaaccaatccattctattcttgttaagacattcatattggattatatttt
tatc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36304452_36305589
seq2: B6Ng01-173O01.b_38_1191 (reverse)

seq1  GATAAAAATTATATCCAATATG-ATGTCTTTAACAAGAATAGGAAATGAA  49
      |||||||||   |||||||||| ||||| |||||||||||||  |||| |
seq2  GATAAAAATATAATCCAATATGAATGTC-TTAACAAGAATAG--AATGGA  47

seq1  TTG--TTTGT-ACAGTGTG-ATTAACTACACTGGTGTCGCTTGGATTTTG  95
      |||  ||||| |||||| | ||||||||||||||  |||||| |||||||
seq2  TTGGTTTTGTAACAGTGGGAATTAACTACACTGGGTTCGCTT-GATTTTG  96

seq1  TCTGT-CT-CCGCCAG-AGTG-TCTTG-TCTGCTGCAAGATCAGA--TCT  138
      ||||| || ||||||| |||| ||||| |||||||||||||||||  |||
seq2  TCTGTACTCCCGCCAGAAGTGTTCTTGTTCTGCTGCAAGATCAGAATTCT  146

seq1  GGGTG-TTTTGTACTTTAATTATC-AGC-TATCATAC-TTTTCTCCAATA  184
      ||||| |||||||||||||||||| ||| |||||||| ||||||||||||
seq2  GGGTGTTTTTGTACTTTAATTATCAAGCTTATCATACTTTTTCTCCAATA  196

seq1  TGTCAGTCTTATAGTGAGATGTACTTATATATCAACTTAAACAACTAT-A  233
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCAGTCTTATAGTGAGATGTACTTATATATCAACTTAAACAACTATAA  246

seq1  AATGTGACATTTCATAAAGAATTAAATGAAGAAAATGTA-TTTTATGCAA  282
      ||||||||||||||||||||| | ||||||||||||||| ||||||||||
seq2  AATGTGACATTTCATAAAGAAATTAATGAAGAAAATGTATTTTTATGCAA  296

seq1  ATCAATTCACACTGAAAGTATATC-AACTCAAATGTTTATCCATATAATA  331
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCAATTCACACTGAAAGTATATCAAACTCAAATGTTTATCCATATAATA  346

seq1  GAAAACC-TTCAAAAATGTCTAGTAAATAGATATAAAAGGAAAAATAAGA  380
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTTCAAAAATGTCTAGTAAATAGATATAAAAGGAAAAATAAGA  396

seq1  ATATTCATGACTATATTTAGGAACAATAGTTTATTTCAATAGCTAATATA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGACTATATTTAGGAACAATAGTTTATTTCAATAGCTAATATA  446

seq1  AGGCAGAAACAAAGGCATTGAGAATATGATACATTATCAGCCAAATATTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAACAAAGGCATTGAGAATATGATACATTATCAGCCAAATATTT  496

seq1  CTGATAAAATACCATGCACATAACCTTTTAGGAACATTTATTAAGACAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAATACCATGCACATAACCTTTTAGGAACATTTATTAAGACAGA  546

seq1  TCACATTCTTGGTCATAAAGTAAGGGTTAATAAATTTCAAGTGATGGAAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCTTGGTCATAAAGTAAGGGTTAATAAATTTCAAGTGATGGAAA  596

seq1  TCAGGCACAGTACATTCTCCAACAATGAAAATTAATTAATTACAGGAAGA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACAGTACATTCTCCAACAATGAAAATTAATTAATTACAGGAAGA  646

seq1  TATCTGTAATTTTCCAATTATCTAGAAAGTAGAAAAGTTAGTTATGATTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAATTTTCCAATTATCTAGAAAGTAGAAAAGTTAGTTATGATTA  696

seq1  TGAATTATAGGTAACAGAGAAATATTGTGATGGATGAAAAAGAATAATAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATAGGTAACAGAGAAATATTGTGATGGATGAAAAAGAATAATAA  746

seq1  ACTCTGTTGAATGCATCTAAAGAAACGCTCGTGTCCACATTAATCCTTGC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTGAATGCATCTAAAGAAACGCTCGTGTCCACATTAATCCTTGC  796

seq1  ATGAATGACATGATAACATCAAAGGGATGACAGCAAATCCCGAAAATAGC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACATGATAACATCAAAGGGATGACAGCAAATCCCGAAAATAGC  846

seq1  CTTACATTTTCCCAAATTAACTCAACGCTCCACTCTGAATGTCTAACAAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTTCCCAAATTAACTCAACGCTCCACTCTGAATGTCTAACAAA  896

seq1  AGAAGCATGTGAATAACAGGCATAAATACTAATTATTCCAGTTCTAGTGC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATGTGAATAACAGGCATAAATACTAATTATTCCAGTTCTAGTGC  946

seq1  CTTACAGTCTGTGCCAAGTAATTAGCTAAAATGTAAGGGCATCTAAAAAT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTCTGTGCCAAGTAATTAGCTAAAATGTAAGGGCATCTAAAAAT  996

seq1  TCAAACAGAAAGCAGTACATAGTCAAGAGACAAAGTAACCAGCAGTACCA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAAAGCAGTACATAGTCAAGAGACAAAGTAACCAGCAGTACCA  1046

seq1  AGTTGGTGATGATAGCAACATTCCAGAGAAGCATTTTAAAATAACCATGA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGATGATAGCAACATTCCAGAGAAGCATTTTAAAATAACCATGA  1096

seq1  TTGATGTGTTCAAGTCTCAAGCAGAAGATGATAAAATGCAGCAATGCATA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTTCAAGTCTCAAGCAGAAGATGATAAAATGCAGCAATGCATA  1146

seq1  AGGAATTC  1138
      ||||||||
seq2  AGGAATTC  1154


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