BAC Information

Click to search

BAC

Clone NameB6Ng01-174B19
Chromosome6 (Build37)
Map Location 83,083,400 - 83,181,502
singlet/doubletdoublet
Overlap geneRtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik
Upstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4
Downstream geneMthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174B19.bB6Ng01-174B19.g
ACCGA002282GA002283
length1,007779
definitionB6Ng01-174B19.b B6Ng01-174B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,180,503 - 83,181,502)(83,083,400 - 83,084,171)
sequence
gaattcattgtcattcaaaagtggatggttgcagctaagctaagagggag
aaagaagcaaaaaaattaaggacacatgaggagactcagagggaagtgag
gtaggttagaagtactgagcctgcaggtcggtagccttggagaaacttcc
agaaaccatgaggcaagaggctggggtctgaagagcctcaccctgaggct
gggagactaccatatgcctaggccagctagcagacaggaaggctggaaac
ctctcagatccacctctaacgtgtaaagcatgcaggggagaagccagagt
atgcaggtgagatagaaaggtgaatactatgaaatgacccataaagggtc
acaactctccagacagtatccttgaacttataagctcctccctcccctgc
cggcttcctgtcttggaagtgtttgccccccttctgtctctgctactgtt
actctccacttgtccccgcccaggtttctcattcagggcataagaaccta
aatctctcatcaggtgcccactggactcacacccaccaataacagctaca
gaatcatgtaaagtattttgttttgtatgtatatgggtattttgccttcg
tgtatgtcagggcatgatgttcatgcagtgcccacagaggccatcggggc
gtgttgaatcagctgggcctagaggtacagatggttgcgagccaccatgt
ggatgctgggaatccaactccagtcctctgggagaatcgacactgagcca
cctttccagccttcactagaggatttttaagaatgggggttctagtatct
cattttttaagctgagtatcttaggggctggagaagcatctacctccccc
ccttctctctacttccttcatttcctcctatcccgaaggtgagaaagctt
attcccattttaaagattcagggctctaaaagaagcccatttttcagggt
cctgggagacatgactcagtgtttaagaagacttggttgctcttccgaga
aatctga
gaattcattatgaattctgtaacttacagagatccctctgcctctgtctc
cctgggatcaaaggcatgggccactcacctccagttggaaatgaacccct
ttagttgtttgtggtactggggattagatctaagggccttaaacctgctg
ctgaactccatccataatccaattacccaattgatctttatcttaatgat
ttttgtaaaagatttagagtgtgtgtgtgtgtgtgtctgtgtgtgtgcgt
gctcgtgaatgtgtatgagtgcaggtgtctgggaataccagaggccttgg
atgcctctagagctggatactgggaacctaactcaggtcctctgtaataa
aatagtgttcattcttgactgctgagccatctctccctctcctttttttt
tttctccctctccttttgagacagggtctaactatgtagcactggttagc
ctcacactccaagcaattctcctgcctccacctcatgagtagtgggatta
ctggtgagcactgatactcctgacagggtaatgagctgttatagtccaat
gagactttccctcagcatcttaagtcggtgtgcttcttctgtgtatgtcc
tctgatgcttattggacacttgcaaagtgcagggcgtaaagtgcgggaca
aagacagactgccccctctctgggaagctcacgcagagtagcgagagtga
acatgtggagtgagggttttcagcctgcttccctctcttttcccttcttt
ccttctccatcgtttgagtatgtgtgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83180503_83181502
seq2: B6Ng01-174B19.b_44_1050 (reverse)

seq1  TCAGATTCTCT-GGAAGAGCAA-CAAGTTCTCTTAAACACTGAGTCATGT  48
      ||||||| ||| |||||||||| |||||  ||||||||||||||||||||
seq2  TCAGATT-TCTCGGAAGAGCAACCAAGTCTTCTTAAACACTGAGTCATGT  49

seq1  CTCC--AGACCCTGAAAAATGGGCTTCTTTTAGAG-CCTGAATCTTTAAA  95
      ||||   |||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCCCAGGACCCTGAAAAATGGGCTTCTTTTAGAGCCCTGAATCTTTAAA  99

seq1  ATGGGA--TAGCTTTCTCACCTTCGGGATAGGAGGAAATGAAGGAAGTAG  143
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATAAGCTTTCTCACCTTCGGGATAGGAGGAAATGAAGGAAGTAG  149

seq1  AGAGAA-GGGGGGAGGTAGATGCTTCTCCAGCCCCTAAGATACTCAGCTT  192
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGGGGAGGTAGATGCTTCTCCAGCCCCTAAGATACTCAGCTT  199

seq1  TAAAAATGAGATACTAGAACCCCCATTCTTAAAAATCCTCTAGTGAAGGC  242
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAGATACTAGAACCCCCATTCTTAAAAATCCTCTAGTGAAGGC  249

seq1  TGGAAAGGTGGCTCAGTGTCGATTCTCCCAGAGGACTGGAGTTGGATTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGTGGCTCAGTGTCGATTCTCCCAGAGGACTGGAGTTGGATTCC  299

seq1  CAGCATCCACATGGTGGCTCGCAACCATCTGTACCTCTAGGCCCAGCTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCACATGGTGGCTCGCAACCATCTGTACCTCTAGGCCCAGCTGA  349

seq1  TTCAACACGCCCCGATGGCCTCTGTGGGCACTGCATGAACATCATGCCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACGCCCCGATGGCCTCTGTGGGCACTGCATGAACATCATGCCCT  399

seq1  GACATACACGAAGGCAAAATACCCATATACATACAAAACAAAATACTTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACACGAAGGCAAAATACCCATATACATACAAAACAAAATACTTTA  449

seq1  CATGATTCTGTAGCTGTTATTGGTGGGTGTGAGTCCAGTGGGCACCTGAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCTGTAGCTGTTATTGGTGGGTGTGAGTCCAGTGGGCACCTGAT  499

seq1  GAGAGATTTAGGTTCTTATGCCCTGAATGAGAAACCTGGGCGGGGACAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTAGGTTCTTATGCCCTGAATGAGAAACCTGGGCGGGGACAAG  549

seq1  TGGAGAGTAACAGTAGCAGAGACAGAAGGGGGGCAAACACTTCCAAGACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTAACAGTAGCAGAGACAGAAGGGGGGCAAACACTTCCAAGACA  599

seq1  GGAAGCCGGCAGGGGAGGGAGGAGCTTATAAGTTCAAGGATACTGTCTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCGGCAGGGGAGGGAGGAGCTTATAAGTTCAAGGATACTGTCTGG  649

seq1  AGAGTTGTGACCCTTTATGGGTCATTTCATAGTATTCACCTTTCTATCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTGACCCTTTATGGGTCATTTCATAGTATTCACCTTTCTATCTC  699

seq1  ACCTGCATACTCTGGCTTCTCCCCTGCATGCTTTACACGTTAGAGGTGGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATACTCTGGCTTCTCCCCTGCATGCTTTACACGTTAGAGGTGGA  749

seq1  TCTGAGAGGTTTCCAGCCTTCCTGTCTGCTAGCTGGCCTAGGCATATGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGTTTCCAGCCTTCCTGTCTGCTAGCTGGCCTAGGCATATGGT  799

seq1  AGTCTCCCAGCCTCAGGGTGAGGCTCTTCAGACCCCAGCCTCTTGCCTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGCCTCAGGGTGAGGCTCTTCAGACCCCAGCCTCTTGCCTCA  849

seq1  TGGTTTCTGGAAGTTTCTCCAAGGCTACCGACCTGCAGGCTCAGTACTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGGAAGTTTCTCCAAGGCTACCGACCTGCAGGCTCAGTACTTC  899

seq1  TAACCTACCTCACTTCCCTCTGAGTCTCCTCATGTGTCCTTAATTTTTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTACCTCACTTCCCTCTGAGTCTCCTCATGTGTCCTTAATTTTTTT  949

seq1  GCTTCTTTCTCCCTCTTAGCTTAGCTGCAACCATCCACTTTTGAATGACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCTCCCTCTTAGCTTAGCTGCAACCATCCACTTTTGAATGACA  999

seq1  ATGAATTC  1000
      ||||||||
seq2  ATGAATTC  1007

seq1: chr6_83083400_83084171
seq2: B6Ng01-174B19.g_69_847

seq1  GAATTCATTATGAATTCTGTAACTTACAGAGATCCCTCTGCCTCTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGAATTCTGTAACTTACAGAGATCCCTCTGCCTCTGTCTC  50

seq1  CCTGGGATCAAAGGCATGGGCCACTCACCTCCAGTTGGAAATGAACCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATCAAAGGCATGGGCCACTCACCTCCAGTTGGAAATGAACCCCT  100

seq1  TTAGTTGTTTGTGGTACTGGGGATTAGATCTAAGGGCCTTAAACCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTTGTGGTACTGGGGATTAGATCTAAGGGCCTTAAACCTGCTG  150

seq1  CTGAACTCCATCCATAATCCAATTACCCAATTGATCTTTATCTTAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCCATCCATAATCCAATTACCCAATTGATCTTTATCTTAATGAT  200

seq1  TTTTGTAAAAGATTTAGAGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAAGATTTAGAGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCGT  250

seq1  GCTCGTGAATGTGTATGAGTGCAGGTGTCTGGGAATACCAGAGGCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGAATGTGTATGAGTGCAGGTGTCTGGGAATACCAGAGGCCTTGG  300

seq1  ATGCCTCTAGAGCTGGATACTGGGAACCTAACTCAGGTCCTCTGTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTAGAGCTGGATACTGGGAACCTAACTCAGGTCCTCTGTAATAA  350

seq1  AATAGTGTTCATTCTTGACTGCTGAGCCATCTCTCCCTCTCCTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTCATTCTTGACTGCTGAGCCATCTCTCCCTCTCCTTTTTTTT  400

seq1  TTTCTCCCTCTCCTTTTGAGACAGGGTCTAACTATGTAGCACTGGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTCTCCTTTTGAGACAGGGTCTAACTATGTAGCACTGGTTAGC  450

seq1  CTCACACTCCAAGCAATTCTCCTGCCTCCACCTCATGAGTAGTGGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCCAAGCAATTCTCCTGCCTCCACCTCATGAGTAGTGGGATTA  500

seq1  CTGGTGAGCACTGATACTCCTGACAGGGTAATGAGCTGTTATAGTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGCACTGATACTCCTGACAGGGTAATGAGCTGTTATAGTCCAAT  550

seq1  GAGAC-TTCCCTCAGCATCTTAAGTCGGTGTGCTTCTTCTGTGTATGTCC  599
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCCCTCAGCATCTTAAGTCGGTGTGCTTCTTCTGTGTATGTCC  600

seq1  TCTGATGCTTATTGGACACTTGCAAAGTGCAGGGCGT-AAGTGCGGGAC-  647
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TCTGATGCTTATTGGACACTTGCAAAGTGCAGGGCGTAAAGTGCGGGACA  650

seq1  AAGACAGACTG-CCCCTCTCTGGGAAGCTCACGCAGAGTAGCGAGAGTGA  696
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACTGCCCCCTCTCTGGGAAGCTCACGCAGAGTAGCGAGAGTGA  700

seq1  ACATGTGGAGTGA-GGTATTCAGCCTGCTTCCCTCTCTTTTCCC-TCTTT  744
      ||||||||||||| ||| |||||||||||||||||||||||||| |||||
seq2  ACATGTGGAGTGAGGGTTTTCAGCCTGCTTCCCTCTCTTTTCCCTTCTTT  750

seq1  -CTTCTCCATCGTTTGAGTATGTGTGCAT  772
       ||||||||||||||||||||||||||||
seq2  CCTTCTCCATCGTTTGAGTATGTGTGCAT  779