BAC Information

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BAC

Clone NameB6Ng01-174I12
Chromosome6 (Build37)
Map Location 130,017,088 - 130,018,222
singlet/doubletsinglet
Overlap geneLOC100038894, LOC100038895, Klra4
Upstream geneClec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893
Downstream geneLOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I12.bB6Ng01-174I12.g
ACCGA002587GA002588
length1,1381,178
definitionB6Ng01-174I12.b B6Ng01-174I12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatcacaaacccaatgacaaaattcacagaagaaaaatcacct
catctcatctctaaaaatcagttgtgaatattttcatcctaactgataga
ttgtaaatgaagtagatatcatgtgataatctatatcacggatcttaaaa
tatgtatctctttgaatcccatgacttcatgtataaaatatctttcttag
tattttctaaagacgggaaagagtaaggatagaggactgtgagtgtgaga
gcagcttgtgatacataggaaggtacaactatctcaaaacaaccactacc
accaccaccaccaccaccacaaaaacaaaccaaaaaacaaaacatcagaa
gaaaaccaaaatgaagcatgagtctatagcccagggataaagtatttgct
gagcatgctcattgtcttagatttgataccccagtaccatgaaaatatca
gcagtaaacctctttatatggaatgacatcactgttcacagtctatatta
cctatgattaaaaatctagaagcatgtacaggcagactttaccagtggaa
atgtgctttaaaggcatttctaatacacactaagatgcaattagcatgat
tcaacatcaaaacattaatataaaaaatagcaacataatagaagatttcc
aaaagtcgaataaaaaattgtgagcagacaagttttaagtccatcttttt
cccaatggttttgctaaagacacaggttttgctctctgtgcaggaatgct
catctttttctgtcttcaaatatcatatatagtcatttcttttgcagcat
ctggcaaaatattttgctttctttcccttgccttcagactcagcttcaaa
agcaattttcctcttttttgatttggtcagaggaggggcagaaaacatga
gattgagtgttgctcagaggaaatttagttctgcctttctttcttggagc
ctctaaggggatacacaccaagaaaaggccccacattaccccaccaggga
catccattccttcttacccacctcacttcagtagagtcacaaggtaacaa
taggttgccttttatgttttctatcaatgttcaaataaacctctagagat
caatggtgggtgacctggaaggaatgatgataggagcc
gaattcactgggacaaccggatctttctactgcaaagcttttattgcttc
aacataaggaataccctgaccccagaaaatgatgctgcttatatagcctg
cagtgtgacttttcagcacctgatatggcatgacagcacctgattagttg
ttcacccatcaccccattactacgccctgagatgggcagtgactgggcgt
gaattcattcttgcacttgcacataaggcttgtttactagttaggcacag
tagaagccagcaccatcttataatggcgattgctcacggcacggctctcc
acatctccccctttttattttattaaaatttgaggctggtctaggcctct
gcagtcatgtccatctgctgtggcttctgtcttaggtcattcctccaatg
tcacagcctttcctgtcatacggcaaccctatcgccacggggtcccgtgt
cttaggttggtctgtacatgaggaaaattgcccatctctggataccgcag
tactgtgtgacagtaactgccaaatgacctagggcaaactctataaaaga
ggccagccaaaaaaaggaattagtaaaactcagcgaagtgcaagtgctga
tcaatgagcattgagtatctctcattctagtgcaatggatccacaaatcc
gtgggacgcaataacagagaacgcaaatgccatctaagtcttaagcatgg
atagcaaaatttcaggggaagccccttgttcaatggctgcaagtgcctga
gtaataacgaccttgtcacggttttgttgggctctgagcttacaaaccaa
ccagagcatgaacacacataaaactacccccaccccattccttaaaataa
gaaaatgcagatgaaatccaggaggagaggccctctgtcaatgacaggtc
cacttgtgtcgagttgatccttaaaactgccgccctcaggcctcagagtc
tcatcgaacccctcagaccaatttactccagtacaaggagagctggtcat
acgattagcctcacgagtaaattttcatattgacacctgtatgacgagca
ccatttcttcacagccactggtcactggttagaacacttatttgtcctac
gaatcgagggcgctctcatccatctcaagctctcctacttggaacctacg
gagtttgaaccttgagtggccatcagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130017088_130018222
seq2: B6Ng01-174I12.b_42_1179 (reverse)

seq1  GGCTCCTATCAATCA-TCCTCTCACGTCA--CACCATATGAAATTCTCTA  47
      |||||||||| |||| ||||  || ||||  |||||| |||   ||||||
seq2  GGCTCCTATC-ATCATTCCTTCCAGGTCACCCACCAT-TGA---TCTCTA  45

seq1  GA-GTTTATTTGAACATTTGATAGAAAAACAATAAAAGCAA-CTATTGTT  95
      || ||||||||||||| ||||||| ||||||  ||| |||| ||||||||
seq2  GAGGTTTATTTGAACA-TTGATAG-AAAACATAAAAGGCAACCTATTGTT  93

seq1  ACC-TGTGACTCTACCTGAAGTGAGGTGGGT-AGAAGGAATGGATGTCCC  143
      ||| |||||||||| |||||||||||||||| ||||||||||||||||||
seq2  ACCTTGTGACTCTA-CTGAAGTGAGGTGGGTAAGAAGGAATGGATGTCCC  142

seq1  TGTTGGGGTAATGT-GGGCCTTTTC-TGGTGTGTATCCCCTTAGAGGCTC  191
      || ||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TGGTGGGGTAATGTGGGGCCTTTTCTTGGTGTGTATCCCCTTAGAGGCTC  192

seq1  CAAG-AAGAAAGGCAGAACTAAATTTCCTCTGAGCAACACTCAATCTCAT  240
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAAGGCAGAACTAAATTTCCTCTGAGCAACACTCAATCTCAT  242

seq1  GGTTTTCTGCCCCTCCTCTTGACCAAATC-AAAAAGAGG-AAATTGCTTT  288
       ||||||||||||||||| |||||||||| ||||||||| ||||||||||
seq2  -GTTTTCTGCCCCTCCTC-TGACCAAATCAAAAAAGAGGAAAATTGCTTT  290

seq1  TGAAAGCTGAGTCTGAAGGCAAGGGAAAG-AAGCAAAATATTTTGCCAGA  337
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TG-AAGCTGAGTCTGAAGGCAAGGGAAAGAAAGCAAAATATTTTGCCAGA  339

seq1  TGCTGCAAAAGAAATGACTATATATGATATTTGAAGACAG-AAAAGATGA  386
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTGCAAAAGAAATGACTATATATGATATTTGAAGACAGAAAAAGATGA  389

seq1  GCATTCCTGCACAGAGAGCAAAACCTGTGTCTTTAGCAAAACCATTGGGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTGCACAGAGAGCAAAACCTGTGTCTTTAGCAAAACCATTGGGA  439

seq1  AAAAGATGGACTTAAAACTTGTCTGCTCACAATTTTTTATTCGACTTTTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGACTTAAAACTTGTCTGCTCACAATTTTTTATTCGACTTTTG  489

seq1  GAAATCTTCTATTATGTTGCTATTTTTTATATTAATGTTTTGATGTTGAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTCTATTATGTTGCTATTTTTTATATTAATGTTTTGATGTTGAA  539

seq1  TCATGCTAATTGCATCTTAGTGTGTATTAGAAATGCCTTTAAAGCACATT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTAATTGCATCTTAGTGTGTATTAGAAATGCCTTTAAAGCACATT  589

seq1  TCCACTGGTAAAGTCTGCCTGTACATGCTTCTAGATTTTTAATCATAGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGTAAAGTCTGCCTGTACATGCTTCTAGATTTTTAATCATAGGT  639

seq1  AATATAGACTGTGAACAGTGATGTCATTCCATATAAAGAGGTTTACTGCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACTGTGAACAGTGATGTCATTCCATATAAAGAGGTTTACTGCT  689

seq1  GATATTTTCATGGTACTGGGGTATCAAATCTAAGACAATGAGCATGCTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCATGGTACTGGGGTATCAAATCTAAGACAATGAGCATGCTCA  739

seq1  GCAAATACTTTATCCCTGGGCTATAGACTCATGCTTCATTTTGGTTTTCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACTTTATCCCTGGGCTATAGACTCATGCTTCATTTTGGTTTTCT  789

seq1  TCTGATGTTTTGTTTTTTGGTTTGTTTTTGTGGTGGTGGTGGTGGTGGTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTTTGTTTTTTGGTTTGTTTTTGTGGTGGTGGTGGTGGTGGTG  839

seq1  GTAGTGGTTGTTTTGAGATAGTTGTACCTTCCTATGTATCACAAGCTGCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTTGTTTTGAGATAGTTGTACCTTCCTATGTATCACAAGCTGCT  889

seq1  CTCACACTCACAGTCCTCTATCCTTACTCTTTCCCGTCTTTAGAAAATAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCACAGTCCTCTATCCTTACTCTTTCCCGTCTTTAGAAAATAC  939

seq1  TAAGAAAGATATTTTATACATGAAGTCATGGGATTCAAAGAGATACATAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGATATTTTATACATGAAGTCATGGGATTCAAAGAGATACATAT  989

seq1  TTTAAGATCCGTGATATAGATTATCACATGATATCTACTTCATTTACAAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATCCGTGATATAGATTATCACATGATATCTACTTCATTTACAAT  1039

seq1  CTATCAGTTAGGATGAAAATATTCACAACTGATTTTTAGAGATGAGATGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTAGGATGAAAATATTCACAACTGATTTTTAGAGATGAGATGA  1089

seq1  GGTGATTTTTCTTCTGTGAATTTTGTCATTGGGTTTGTGATGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTTCTTCTGTGAATTTTGTCATTGGGTTTGTGATGAGAATTC  1138