BAC Information

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BAC

Clone NameB6Ng01-174J13
Chromosome6 (Build37)
Map Location 56,211,717 - 56,212,309
singlet/doubletsinglet
Overlap genePde1c
Upstream geneC330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J13.bB6Ng01-174J13.g
ACCGA002636GA002637
length1,199846
definitionB6Ng01-174J13.b B6Ng01-174J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagagttctaccaaacctgcagagaactacaattatactt
cttaaattattaaaaaaaaaaaccctggaaacagaaggaacactccaaaa
tttatcctatgaagtcatattgtgttgctatgtaaggacgtagcaaacaa
acaaacaaacaaaaagctctacggactaatttgtctgatgaacagagatg
aagaccctcaataaaatcctagcaaacagaaagcaggcacatatcaagaa
gatcatccaccatgatcaagctggcttcatcccagaaatgcagggatggt
tcaacacatgtaagtcaataaatataacaatatagcagtatatattattt
atataacaatacaaaatgtgtaaaatataacaataaatatataaatggac
ttaaagatttaaaaaaaaaatcatatcatttcaattgatgcagaaaaagc
ctttgaaaaatccaagtgctgtcatgattaaggcattagagacaataggc
ctggaagaaatatacctcaacataataaaggcaatagataacaaacccac
aggcaaaatcatcctaaatagaaaaaaaaaaacttgaagcaaccccatta
aaattatgaatgggacagggatatccactcttcccacttcttttcaaaat
agtactagaaacataagccagagcaatatggcaaaagaaggaagctaaag
gatacagataggaaagatgctaaattatacttatttgcagatgacatgat
attatatataactgattcaagaaaatttaccaggcaacttctagaaacaa
tcaacaatttcagctagcatcaaagacaataaaatatcttgggataaact
tcaaggcatattataaagcttatagtaataaaaacaatatagaactggca
caaaaaatagaacatgttgcccaatgaaacaaaataaaagctcaaacatg
agtgtgtgaaacgagccatctgatactgataaaaaagcatcttcaacaat
gtgccaagtaattgaatgcttcacataccagcatgaacttggctcatact
tatcactcttgacaaaaattagctcaagtggttcaaagaactttatctga
aacctgaattgaatacactgcctaaagaatctaggcaagaatccgggtta
ggaattccgaaaagacttaattgtcagatccgtgagcccacacaatatc
gaattcactgtttaagattatatggtcaaggaagaaaaattttaaatttc
tagacttgaataaaaatgaaaatctgtgggacaaaatgaaggtagcacta
agaggaagtttatagcagtatgtgcctccatcaaacttttgacagatcac
atattaaacttaatgatgcacataaaagctttggaaaaacaagaaaaact
aatatcccaaacaaacagattgcaaaagatagtcagaaacagggctggac
tgaatgaaatagaatcattcaattgtgtgattgtgtgaaacatcaacaca
atgaatatgaagaaccagagaaacaaagagttatatctatgaaaagatta
acaaggttgacaaacctttatccaaattaaccaagaaagagaggattcaa
gtcaataaaactatagataaaatgggaaaaattaccaccaactgtggaaa
tttggagaactacaatgatatactttgcatatttacatttcataaatatg
gagggatttctaggtatttatgagctaccaagtttaaatgtagataaata
aatagacttataatagccaagagaaagctacagtaattaaaaatattcca
agtaaaacaaaaaccaaagagcaacagatagattcatcctagaattcaac
ccagacctttaaagaattaacttaattattcctcaaattattccgtacaa
ttgaaagactttttatactaatagttggggataaagtatgcagctattga
cttggtcattgattcaaatatcccttgtgaaatgcatgattaagtttaat
ttaagttttcaatctgaattttattcccatcctttagtgccagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56211717_56212309
seq2: B6Ng01-174J13.g_326_918 (reverse)

seq1  ACTCTGGCACTAAAGAATGGGAATAAAATTCAGATTTGAAAACTTAAATT  50
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ACTCTGGCACTAAAGGATGGGAATAAAATTCAGA-TTGAAAACTTAAATT  49

seq1  AAAACTTAAATCATGCATTTCCCAA-GGATATTTGAATCAATGACCAAGT  99
       |||||| ||||||||||||| ||| ||||||||||||||||||||||||
seq2  -AAACTT-AATCATGCATTTCACAAGGGATATTTGAATCAATGACCAAGT  97

seq1  CAATAGCTGCATACTTTAT-CCCAACTATTAGTATAAAAAGTCTTTCAAT  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATAGCTGCATACTTTATCCCCAACTATTAGTATAAAAAGTCTTTCAAT  147

seq1  TGTACGGAATAATTTGAGGAATAATTAAGTTAATTCTTTAAAGGTCT-GG  197
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTACGGAATAATTTGAGGAATAATTAAGTTAATTCTTTAAAGGTCTGGG  197

seq1  TTGAATTCTAGGATGAATCTATCTGTTGCTCTTTGGTTTTTGTTTTACTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTAGGATGAATCTATCTGTTGCTCTTTGGTTTTTGTTTTACTT  247

seq1  GGAATATTTTTAATTACTGTAGCTTTCTCTTGGCTATTATAAGTCTATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTTTAATTACTGTAGCTTTCTCTTGGCTATTATAAGTCTATTT  297

seq1  ATTTATCTACATTTAAACTTGGTAGCTCATAAATACCTAGAAATCCCTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTACATTTAAACTTGGTAGCTCATAAATACCTAGAAATCCCTCC  347

seq1  ATATTTATGAAATGTAAATATGCAAAGTATATCATTGTAGTTCTCCAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGAAATGTAAATATGCAAAGTATATCATTGTAGTTCTCCAAAT  397

seq1  TTCCACAGTTGGTGGTAATTTTTCCCATTTTATCTATAGTTTTATTGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTTGGTGGTAATTTTTCCCATTTTATCTATAGTTTTATTGACT  447

seq1  TGAATCCTCTCTTTCTTGGTTAATTTGGATAAAGGTTTGTCAACCTTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTCTCTTTCTTGGTTAATTTGGATAAAGGTTTGTCAACCTTGTT  497

seq1  AATCTTTTCATAGATATAACTCTTTGTTTCTCTGGTTCTTCATATTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCATAGATATAACTCTTTGTTTCTCTGGTTCTTCATATTCATT  547

seq1  GTGTTGATGTTTCACACAATCACACAATTGAATGATTCTATTTCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATGTTTCACACAATCACACAATTGAATGATTCTATTTCAT  593