BAC Information

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BAC

Clone NameB6Ng01-174J24
Chromosome6 (Build37)
Map Location 34,577,926 - 34,719,986
singlet/doubletdoublet
Overlap geneLOC100039184, Cald1
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Downstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J24.bB6Ng01-174J24.g
ACCGA002658GA002659
length685779
definitionB6Ng01-174J24.b B6Ng01-174J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,577,926 - 34,578,606)(34,719,224 - 34,719,986)
sequence
ggaattcacaatattaaagagagatgcagttgcaagagcaatggcctcgg
agatgccagaggggaagcctagagcttaaggggaagaggtgacttcagag
aggagaggaagcaaaggaggaaaactgtcgggactcaactgagggagagt
acagaatgagggggtgatggcctccattttctctaggtgaaaggagaaag
acattcattatctgggaaggaaaggggctggatacttgggaagttttaag
agaccagagcaagtttggatttcaacaacagaataaggctgccaggtagc
ctagcatcagtagtaatggaggttaagtaaaagcagtctatgtgcatgca
catctgctttcttccagctgagttcagctgcctgcccgtggctacataca
acattgcattcatagtgatgaatcatgggatgtcagttgtgaaaggagag
tgggtggcaaaggaagataacatcacagagcttaagaagtaaagaaagag
gcttagaggatcacacatgggaatattgaattattgagaattatggcaga
aataatatcaaaagagtcatgagctaaaacactatagaagtagaggaaaa
aagttcctgggatcagctagtgacaaagcaagaaggagtagtaaactgtc
ttgctagggagagatgaggggatgaaaaggacggg
gaattccactacatttgccaacttgggtaaaagttgccaaattgtctaga
agacttaaaactgttggcaactgtaataagtaacatgccggcagagctct
aacgagtgggcataatcatttatttacttgattcataggcgacatatttt
tctttcacatgagtgtttctacataagaaaatggattgcatttccctcaa
atagtcttgttgaatctttcaagatcacttaaggagtttaaataaggtgt
tttaagaaaatatcaacatccacattgtaagtcagtattttcaagtcaaa
gaggaagtataaaatgggaattacctgaccagactacatgttagagaaag
acccactctgggagaggagggagaaatgaaggcaggaaaggcaggtttcc
aggcaaccagagacgaaagagtgaagaagagaagccagctgagaaagaca
tcattctcttttttttaaacaaaaagaaagacaagttagcactttaattg
cttcatgacatacagtttagacacaaagagtagacaaaccagctaaaaac
attcagaatttaattccagccacaaagtcaccctagaagcctataaaact
caactcataaatggtttgaaatgccccagtaagacacattaggcagggca
atgtttgattttaaaatttgctagttttctagggggatagggcttaacaa
tttgtgagcccctttgtaattccttagcatctctggaagatgaatagcat
tagctaactatttttttggggtagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34577926_34578606
seq2: B6Ng01-174J24.b_46_729

seq1  GAATTCACAATATTAAAGAGAGATGCAGTTGCAAGAGCAATGGCCTCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATATTAAAGAGAGATGCAGTTGCAAGAGCAATGGCCTCGGA  50

seq1  GATGCCAGAGGGGAAGCCTAGAGCTTAAGGGGAAGAGGTGACTTCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGAGGGGAAGCCTAGAGCTTAAGGGGAAGAGGTGACTTCAGAGA  100

seq1  GGAGAGGAAGCAAAGGAGGAAAACTGTCGGGACTCAACTGAGGGAGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGCAAAGGAGGAAAACTGTCGGGACTCAACTGAGGGAGAGTA  150

seq1  CAGAATGAGGGGGTGATGGCCTCCATTTTCTCTAGGTGAAAGGAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGGGGGTGATGGCCTCCATTTTCTCTAGGTGAAAGGAGAAAGA  200

seq1  CATTCATTATCTGGGAAGGAAAGGGGCTGGATACTTGGGAAGTTTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTATCTGGGAAGGAAAGGGGCTGGATACTTGGGAAGTTTTAAGA  250

seq1  GACCAGAGCAAGTTTGGATTTCAACAACAGAATAAGGCTGCCAGGTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGCAAGTTTGGATTTCAACAACAGAATAAGGCTGCCAGGTAGCC  300

seq1  TAGCATCAGTAGTAATGGAGGTTAAGTAAAAGCAGTCTATGTGCATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCAGTAGTAATGGAGGTTAAGTAAAAGCAGTCTATGTGCATGCAC  350

seq1  ATCTGCTTTCTTCCAGCTGAGTTCAGCTGCCTGCCCGTGGCTACATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTCTTCCAGCTGAGTTCAGCTGCCTGCCCGTGGCTACATACAA  400

seq1  CATTGCATTCATAGTGATGAATCATGGGATGTCAGTTGTGAAAGGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATTCATAGTGATGAATCATGGGATGTCAGTTGTGAAAGGAGAGT  450

seq1  GGGTGGCAAAGGAAGATAACATCACAGAGCTTAAGAAGTAAAGAAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCAAAGGAAGATAACATCACAGAGCTTAAGAAGTAAAGAAAGAGG  500

seq1  CTTAGAGGATCACACATGGGAATATTGAATTATTGAGAATTATGGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGATCACACATGGGAATATTGAATTATTGAGAATTATGGCAGAA  550

seq1  ATAATATCAAAAGAGTCATGAGCTAAAACACTATAGAAGTAGAGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCAAAAGAGTCATGAGCTAAAACACTATAGAAGTAGAGGAAAAA  600

seq1  AGTT-CTGGGATCAGCTAGTGACAAAGCAAGAAGGAGTAGTAAACTGTCT  649
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGGGATCAGCTAGTGACAAAGCAAGAAGGAGTAGTAAACTGTCT  650

seq1  TGCTAGGGAGAGATGA-GGGATG-AAAGGACGGG  681
      |||||||||||||||| |||||| ||||||||||
seq2  TGCTAGGGAGAGATGAGGGGATGAAAAGGACGGG  684

seq1: chr6_34719224_34719986
seq2: B6Ng01-174J24.g_71_849 (reverse)

seq1  AAAAACTACCC---AAAAATAG-TAGCT-ATGCTA-TCATCTT-CAGAGA  43
      |||||||||||   |||||||| ||||| |||||| ||||||| ||||||
seq2  AAAAACTACCCCAAAAAAATAGTTAGCTAATGCTATTCATCTTCCAGAGA  50

seq1  TGCTAA-GAATTACAA--GGGCTCAC-AATTGTT-AGCCCTAT-CCCCTA  87
      |||||| |||||||||  |||||||| ||||||| |||||||| ||||||
seq2  TGCTAAGGAATTACAAAGGGGCTCACAAATTGTTAAGCCCTATCCCCCTA  100

seq1  GAAAACTAGCAAATTTTAAAATCAAACATTGCCCTGCCTAATGTGTCTTA  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAGCAAATTTTAAAATCAAACATTGCCCTGCCTAATGTGTCTTA  150

seq1  CTGGGGCA-TTCAAACCATTTATGAGTTGAG-TTTATAGGCTTCTAGGGT  185
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGGGCATTTCAAACCATTTATGAGTTGAGTTTTATAGGCTTCTAGGGT  200

seq1  GACTTTGTGGCTGGAATTAAATTCTGAATG-TTTTAGCTGGTTTGTCTAC  234
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTTTGTGGCTGGAATTAAATTCTGAATGTTTTTAGCTGGTTTGTCTAC  250

seq1  TCTTTGTGTCTAAACTGTATGTCATGAAGCAATTAAAGTGCTAACTTGTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTCTAAACTGTATGTCATGAAGCAATTAAAGTGCTAACTTGTC  300

seq1  TTTCTTTTTGTTTAAAAAAAAGAGAATGATGTCTTTCTCAGCTGGCTTCT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTGTTTAAAAAAAAGAGAATGATGTCTTTCTCAGCTGGCTTCT  350

seq1  CTTCTTCACTCTTTCGTCTCTGGTTGCCTGGAAACCTGCCTTTCCTGCCT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCACTCTTTCGTCTCTGGTTGCCTGGAAACCTGCCTTTCCTGCCT  400

seq1  TCATTTCTCCCTCCTCTCCCAGAGTGGGTCTTTCTCTAACATGTAGTCTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCCCTCCTCTCCCAGAGTGGGTCTTTCTCTAACATGTAGTCTG  450

seq1  GTCAGGTAATTCCCATTTTATACTTCCTCTTTGACTTGAAAATACTGACT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTAATTCCCATTTTATACTTCCTCTTTGACTTGAAAATACTGACT  500

seq1  TACAATGTGGATGTTGATATTTTCTTAAAACACCTTATTTAAACTCCTTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTGGATGTTGATATTTTCTTAAAACACCTTATTTAAACTCCTTA  550

seq1  AGTGATCTTGAAAGATTCAACAAGACTATTTGAGGGAAATGCAATCCATT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTTGAAAGATTCAACAAGACTATTTGAGGGAAATGCAATCCATT  600

seq1  TTCTTATGTAGAAACACTCATGTGAAAGAAAAATATGTCGCCTATGAATC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGTAGAAACACTCATGTGAAAGAAAAATATGTCGCCTATGAATC  650

seq1  AAGTAAATAAATGATTATGCCCACTCGTTAGAGCTCTGCCGGCATGTTAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAAATGATTATGCCCACTCGTTAGAGCTCTGCCGGCATGTTAC  700

seq1  TTATTACAGTTGCCAACAGTTTTAAGTCTTCTAGACAATTTGGCAACTTT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAGTTGCCAACAGTTTTAAGTCTTCTAGACAATTTGGCAACTTT  750

seq1  TACCCAAGTTGGCAAATGTAGTGGAATTC  763
      |||||||||||||||||||||||||||||
seq2  TACCCAAGTTGGCAAATGTAGTGGAATTC  779