BAC Information

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BAC

Clone NameB6Ng01-175G15
Chromosome6 (Build37)14 (Build37)
Map Location 80,409,055 - 80,409,36537,058,385 - 37,059,511
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC621815, LOC100043392, Lrrtm4
Downstream geneLOC100043390, LOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G15.bB6Ng01-175G15.g
ACCGA003225GA003226
length9921,125
definitionB6Ng01-175G15.b B6Ng01-175G15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,409,055 - 80,409,365)(37,058,385 - 37,059,511)
sequence
gaattctcacctgaggaatactgaacagcttagacacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tacacctcacaccactcacaatgactaagacaaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccatggttggtg
ggattgaaagcttgtacaaccactctggaaatcattctggctgttcctta
gaaaattggacatagtactaccggaggattctgtaatacctctcctgggc
atatatccagaacatgttctaaccgctaagaaggacacatgctctactat
gttcatagctgccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactctcagctattaaaaagaatgaatttatgaaatttctaggcaaa
tggatggacctggagggcatcattctgagtgaggtaacccaatcacaaaa
gaactcacatgatatgtactcactgataagtgggtattagcctagaaact
tagaatacccaagctataaggtacaatttgtgaaacacatgaaactcaag
aagaactaagaccaaagagtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagtcca
tggccatgtagagactgccatatccggggatccatcccataatcagcctc
caaacgctgacaccattgcatacacaagcaagattttgctgaaaggactc
tgatatagctggctcttgtgaggctatgccagggcctagaaaacacggaa
gtggatgctcacattcagctattggatggatcacagggtccccaatggag
gatctagagaaagtacccaaggagtttaggggatctgcaacc

gaattccataacaaatagacaaatggatggatctgaaggccatgcttata
ctggataatagagttcacaaaatgaataggtcagttcacatgaaaggcaa
tctttactgccattgcacaaaaaaagctaagcagggcattcagcccacac
aatgctatcagccactgaaaaaggaaacattcaaaacaataacacgagcc
ttactgaatatgactatcaatgacgtaagttggaattaagtttactgata
tgaaagacaatagttaggtctattttaggctataagcaccacagcctatc
tcataatatggaatcacaaggggccacttaagtttaaatgatgctttgat
atctgaatggaacttttagctgggttatctcaattaatccctttgaaagt
ctattagtgagataatatcagcaatgttcagctaggagaagtagagggtt
catgagatttatggaactttccttgcacaagtcaaagaacagattgctta
ggattcagattcaggttctgctctgacatcaaaacagcaataagtcctct
ctgccttactaccatcattcaatgtttattcagctgaattccaaagtgaa
gtgaggttaaaagacaagtcataaaatggggtaaatgacttgctacacat
aaaacaagaggcatccatgttcatatattgtcatgtgcatctttgaatta
atatgattacagacaaagcaattcaaagtggataaatgagaaaaccaatg
gtttaaagaataaaaactctgatggcctagaaatgagtatgtttcaaatc
tgtttctgtcataggaaaaatcaggaaaggaataaaggggaaatacagtg
tttacctcatgtcttgccaatcaatgtggtgaagaccaagttgttattgt
cagtctgttttaggttatttacaattactctgcattgttgagctgactgg
ctttgggaatattcacttgtgtctgtgagggtatttttccatcctgaata
tgggcaatgtcttgtaagagtagagatgacataaaacaaataaatgagat
attggaaactccattgccgctagaacagaaagagtcacttggggaggtca
ctttagtttcattcctctgctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80409055_80409365
seq2: B6Ng01-175G15.b_732_1036 (reverse)

seq1  GGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTG  50
      ||||||||||||| | | |||||||| |||||||||||| ||||||||||
seq2  GGTTGCAGATCCCCTAAACTCCTTGGGTACTTTCTCTAGATCCTCCATTG  50

seq1  GGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGT  100
      ||  |||| ||||||||||| ||||||| |||||||||||||||| ||||
seq2  GGGACCCTGTGATCCATCCAATAGCTGAATGTGAGCATCCACTTCCGTGT  100

seq1  TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTT  150
      || |||||||| ||||||| |||||||||| |||||| ||| | ||||||
seq2  TTTCTAGGCCCTGGCATAGCCTCACAAGAGCCAGCTATATCAGAGTCCTT  150

seq1  TCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGATGCTGA  200
      |||  ||||||||||| |||||||||||||||||||| |||||| |||||
seq2  TCAGCAAAATCTTGCTTGTGTATGCAATGGTGTCAGCGTTTGGAGGCTGA  200

seq1  TTGTGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTC  250
      || |||| |||||||| |||||||||||||||||||||| |||     | 
seq2  TTATGGGATGGATCCCCGGATATGGCAGTCTCTACATGG-CCA-----TG  244

seq1  ATCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTT  300
        |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTT  294

seq1  CCCAAATCTAA  311
      ||||| |||||
seq2  CCCAATTCTAA  305


seq1: chr14_37058385_37059511
seq2: B6Ng01-175G15.g_63_1187

seq1  GAATTCCATAACAAATAGACAAATGGATGGATCTGAAGGCCATGCTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACAAATAGACAAATGGATGGATCTGAAGGCCATGCTTATA  50

seq1  CTGGATAATAGAGTTCACAAAATGAATAGGTCAGTTCACATGAAAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAATAGAGTTCACAAAATGAATAGGTCAGTTCACATGAAAGGCAA  100

seq1  TCTTTACTGCCATTGCACAAAAAAAGCTAAGCAGGGCATTCAGCCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGCCATTGCACAAAAAAAGCTAAGCAGGGCATTCAGCCCACAC  150

seq1  AATGCTATCAGCCACTGAAAAAGGAAACATTCAAAACAATAACACGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCAGCCACTGAAAAAGGAAACATTCAAAACAATAACACGAGCC  200

seq1  TTACTGAATATGACTATCAATGACGTAAGTTGGAATTAAGTTTACTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAATATGACTATCAATGACGTAAGTTGGAATTAAGTTTACTGATA  250

seq1  TGAAAGACAATAGTTAGGTCTATTTTAGGCTATAAGCACCACAGCCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACAATAGTTAGGTCTATTTTAGGCTATAAGCACCACAGCCTATC  300

seq1  TCATAATATGGAATCACAAGGGGCCACTTAAGTTTAAATGATGCTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATATGGAATCACAAGGGGCCACTTAAGTTTAAATGATGCTTTGAT  350

seq1  ATCTGAATGGAACTTTTAGCTGGGTTATCTCAATTAATCCCTTTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGGAACTTTTAGCTGGGTTATCTCAATTAATCCCTTTGAAAGT  400

seq1  CTATTAGTGAGATAATATCAGCAATGTTCAGCTAGGAGAAGTAGAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTGAGATAATATCAGCAATGTTCAGCTAGGAGAAGTAGAGGGTT  450

seq1  CATGAGATTTATGGAACTTTCCTTGCACAAGTCAAAGAACAGATTGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATTTATGGAACTTTCCTTGCACAAGTCAAAGAACAGATTGCTTA  500

seq1  GGATTCAGATTCAGGTTCTGCTCTGACATCAAAACAGCAATAAGTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGATTCAGGTTCTGCTCTGACATCAAAACAGCAATAAGTCCTCT  550

seq1  CTGCCTTACTACCATCATTCAATGTTTATTCAGCTGAATTCCAAAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTACTACCATCATTCAATGTTTATTCAGCTGAATTCCAAAGTGAA  600

seq1  GTGAGGTTAAAAGACAAGTCATAAAATGGGGTAAATGACTTGCTACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTAAAAGACAAGTCATAAAATGGGGTAAATGACTTGCTACACAT  650

seq1  AAAACAAGAGGCATCCATGTTCATATATTGTCATGTGCATCTTTGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAGGCATCCATGTTCATATATTGTCATGTGCATCTTTGAATTA  700

seq1  ATATGATTACAGACAAAGCAATTCAAAGTGGATAAATGAGAAAACCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTACAGACAAAGCAATTCAAAGTGGATAAATGAGAAAACCAATG  750

seq1  GTTTAAAGAATAAAAACTCTGATGGCCTAGAAATGAGTATG-TTCAAATC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTAAAGAATAAAAACTCTGATGGCCTAGAAATGAGTATGTTTCAAATC  800

seq1  TG-TTCTGTCATAGGAAAAATCAGG-AAGGAATAAAGGGGAAATACAGTG  847
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTTTCTGTCATAGGAAAAATCAGGAAAGGAATAAAGGGGAAATACAGTG  850

seq1  -TTACCTCATGTCTTGCCAATCAATGTGGTGAAGACCAAGTTGTTATTGT  896
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCATGTCTTGCCAATCAATGTGGTGAAGACCAAGTTGTTATTGT  900

seq1  CAGTCTGTTTTAGG-TATTTACAATTACTCTGCATTGTTGAGCTGACTGG  945
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTTTTAGGTTATTTACAATTACTCTGCATTGTTGAGCTGACTGG  950

seq1  CTTTGGAATAATTCACTTGTGTCTGTGAGGGTA-TTTTCCATCCTGAATA  994
      |||||| |  ||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTGGGAATATTCACTTGTGTCTGTGAGGGTATTTTTCCATCCTGAATA  1000

seq1  T-GGCAATGTC-TGTAAGAAGTAGAGAAGGACAATAAAACAAATAAAATG  1042
      | ||||||||| |||||| ||||||| | ||| ||||||||||| |||||
seq2  TGGGCAATGTCTTGTAAG-AGTAGAG-ATGAC-ATAAAACAAAT-AAATG  1046

seq1  AAGATATTGGAAAACCCCCATTG-CGCTAG-ACAGAAAAGAGTCACTTTG  1090
       ||||||||||||  | |||||| |||||| |||| |||||||||||| |
seq2  -AGATATTGGAAA--CTCCATTGCCGCTAGAACAG-AAAGAGTCACTTGG  1092

seq1  GGAAGTCACTTTAGTTTTCATTCTCTTCTGCTTCTTT  1127
      ||| |||||||||| ||||||  || ||||| |||||
seq2  GGAGGTCACTTTAG-TTTCAT--TCCTCTGC-TCTTT  1125


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