BAC Information

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BAC

Clone NameB6Ng01-175M20
Chromosome6 (Build37)
Map Location 58,339,886 - 58,340,413
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2
Downstream geneLOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175M20.bB6Ng01-175M20.g
ACCGA003511GA003512
length1,133860
definitionB6Ng01-175M20.b B6Ng01-175M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttactttgcttttactatactttaactgtacttttactgat
tgttttagctaacctggttattttgtttttccatatgaaattaagaatgg
ttctttgatgatcttttaaaaaatgtgttggaatttatttgggacttaaa
ctgaatctgtagattgtttttggtaagatgggaattttcactatgttaat
cccaccaatacatgagcatggaagatctttccatcttctgatatcttccc
ccatttctttcttcagagacatgaagctcttctcacataggccatccatt
tgcttggttagagtcaacccaatatactttatattatttgtcgccattgt
gaagggtgttgttttcctaatttctttctcagctcatctattgtttgtat
aaagagggctactgatttctttaagatgattttgaatccaggtactttgc
tgaaggtgtttatcagctgtcgaatttctcttgtagaatatttggagtca
cttatgtatactatcatatgatgtgccaggtgattcttcctttccaaatt
gtgtcctctgtatctcctttagttgtcttattgctctggctggaacttta
agtactgtgtttattagatacagagagaattggcatccttgtattgtacc
tgatttttgtggaattgctttaaggttctctccctttaatttgatgctgg
ctattggtttgctctttattgcttttattttgtttaggtgtgcatctttt
atacctgatctttccaagtctttcctcacttgtgcctctaactttgaaga
tttgatttattttcatggcgcccacatacaaaacacttcctaggtattct
gtatatcaactgagctacataccagccccaatggacttgtttcatcctga
tatgatttcattcatattcagtttctctgataatacaattgtaatcactt
tctgtgtgcttcattaagatccaattactttttcctgaaaggaatttgga
agaaaggtgaatataattcttaaattttatatccttttgagttcttaact
tatctatggtgggaagccctaagcatactgttgaagtaagtatgtacggg
acatgaattgtttctggaatcaggaaggatacc
gaattcctggtctttccaagacttttaccatgaagggatctgaattttat
caaatgctttctcagcatctaatgagatgatcctgtgagttttgtctttg
atgtttttattacgttgatggatttccatatattacatgatccctgcatc
tctggaatgaagcctacttgatcatgataaatgatcattttgatgtgttc
ttggatttggtttgcaagaattttattgagtatttttgcatcgacattca
tgaatgaaattggtctgatgtactcttccttttttgggtcttttgtggtg
tatggataagcatcattatggcttcatagaacgaattagtgttcttgttg
tttgcattttgtggaatagtttaaagagtattgattttaggtcttctttg
aaggtctgattcaattttggactaaaacaatctggtcctgtgcacgtttt
aattaatttatttatttatttttggttgcgagactttaaatgactgctgt
tatttttaggggttatgggattgtttagatgatttgtatgcccctgattt
aactttggtacctggtatctgtctagaaaattgttcacttaatccaagtt
tttttgagtataggcttttgtaggatctaagttttctttatttgatattt
taaaaattttcctttacattctgttgttatgtctccctttcattactgat
tttattactttggattctgtttctgtgccctctggttagtctggctaagg
gtttgtctaccttgttgagttctcccaaagaaccaagcttcctggttttt
gtttgatttttgtataggttttttttcctgtgtctccatgggttgaactt
tcatagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58339886_58340413
seq2: B6Ng01-175M20.b_624_1175 (reverse)

seq1  GGTATCCTTCCTGCTTCCA-AAAC-ATTCATTGTCCCCTCCATACTTACT  48
      ||||||||||||| ||||| |||| ||||| |||||| | ||||||||||
seq2  GGTATCCTTCCTGATTCCAGAAACAATTCA-TGTCCCGTACATACTTACT  49

seq1  TC-ACAGTATCTTTAGG--CTCCCACC-TA-ATAA-TTAAGAACTCAAAA  92
      || |||||||  |||||   ||||||| || |||| ||||||||||||||
seq2  TCAACAGTATGCTTAGGGCTTCCCACCATAGATAAGTTAAGAACTCAAAA  99

seq1  G---ATAAAA-TTAAGAA-TATA-TCACCTT--CTCCAAATT-CTTTCAG  133
      |   |||||| ||||||| |||| |||||||   |||||||| |||||||
seq2  GGATATAAAATTTAAGAATTATATTCACCTTTCTTCCAAATTCCTTTCAG  149

seq1  G-AAAAGT-ATTGGATCTTAATG-AGCACACAG-AAGTGA-TACAA-TGT  177
      | |||||| |||||||||||||| ||||||||| |||||| ||||| |||
seq2  GAAAAAGTAATTGGATCTTAATGAAGCACACAGAAAGTGATTACAATTGT  199

seq1  ATTATCAGGAGAAACTG-ATATGAATGAAATCATATCAGGATGAAACAAG  226
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTATCA-GAGAAACTGAATATGAATGAAATCATATCAGGATGAAACAAG  248

seq1  TCCATTGGGGCTGGTATGTAGCTCAGTTGATATACAGAATACCTAGGAAG  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGGCTGGTATGTAGCTCAGTTGATATACAGAATACCTAGGAAG  298

seq1  TGTTTTGTATGTGGGCGCCATG-AAATAAATCAAATCTTC-AAGTTAGAG  324
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TGTTTTGTATGTGGGCGCCATGAAAATAAATCAAATCTTCAAAGTTAGAG  348

seq1  GCACAAGTGAGGAAAGACTTGGAAAGATCAGGTATAAAAGATGCACACCT  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTGAGGAAAGACTTGGAAAGATCAGGTATAAAAGATGCACACCT  398

seq1  AAACAAAATAAAAGCAATAAAGAGCAAACCAATAGCCAGCATCAAATTAA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATAAAAGCAATAAAGAGCAAACCAATAGCCAGCATCAAATTAA  448

seq1  AGGGAGAGAACCTTAAAGCAATTCCACAAAAATCAGGTACAATACAAGGA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAACCTTAAAGCAATTCCACAAAAATCAGGTACAATACAAGGA  498

seq1  TGCCAATTCTCTCTGTATCTAATAAACACAGTACTTAAAGTTCCAGCCAG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTCTCTCTGTATCTAATAAACACAGTACTTAAAGTTCCAGCCAG  548

seq1  AGCA  528
      ||||
seq2  AGCA  552