BAC Information

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BAC

Clone NameB6Ng01-175O14
Chromosome6 (Build37)
Map Location 58,393,253 - 58,528,418
singlet/doubletdoublet
Overlap geneLOC626817, EG626828, LOC666954
Upstream geneLOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22
Downstream geneAbcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175O14.bB6Ng01-175O14.g
ACCGA003590GA003591
length1,1791,063
definitionB6Ng01-175O14.b B6Ng01-175O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,393,253 - 58,394,415)(58,527,358 - 58,528,418)
sequence
gaattctataatcatatattacagaatcctattcctattctaccccctat
aataagctctcagtaaaatgaaaagaaaaagaacactcaccagcttggcc
attaacaaacatccttgtagaatgaggccctaagaagtagttataaggaa
gagatattatcagctcatctccctctagacccatagttatgtcatctgga
gaaggcagttctgaacttgaggttgttagaaagtgctatgctcaaatgca
aaagtgaactttcctaatcccaagaaaacaatagagtaggaacagctgag
ctttgaatttcccacatgtaagctattctctggaggccacatctgtctgt
gtagattaattgatcccagttcctgtgaacaaagcagtagtaacaacatt
aatacccacttaagagaaacagaaaaacattttagattcctccatggtat
cctttgttcttctaaatcatttatggtcagttccatacataattgacaat
ggctttaggttctcacctagaaattaacagctcttttgataaaattaaga
aaatgtcacctcctccaaacacgcttaggagagaaatgtttcttacaaag
cagatagaagtgagaaaatgtaactgtattttcaggagaaactgggctgt
gggcctgggatatagctcagttcatagattacatgcctagaaagtattct
gtatttaggacacaatgaaataagtcaaaccttcaagttataggcacagg
tgatggaaaataatcccaagtcaatggcaaacataaggcattcaataaga
ccatacaataaaccaacccgaagacatacctatataacacaagaaacaca
gagaccacataaaaagacaagactagaataaaaaatttccatgcatctta
tagagaaaacactaaataatacagaattaaaaagtgggaatgctagctct
gttaagtcacaaataaataaaaacccaattaaggtgggaaaaattgaact
tttcccaaatttagaagaaaaatgggttgagttgaacagcctgatttctt
ccaaggagttctgtagcttcttgtatgttcatggggcatcttctttcgta
gttgggaaggttttccttctataattttgtttgaagaatatttgcctggt
cctttagttgaaaatcttccatctcatct
gaattcccaaaagatagctgtatttgcagaaactgagtgactagaatttc
agcactgtggaaagactggaatgtggtaagtccagaagctaaatacctta
tcttgggcaagtattaatcttgccgtggtgtcagaactaacatcctgtga
ctaatggataaaaatttattaatttaccagactgcaagcgtctaccaacc
tcaaaactaagcaggttattaaatagtatcttgggcgtataaaaaagatt
ctgcaatttctatgtacctacttctctgctataactccaaggttttttaa
acttgctttgatttatgactttttgttctataaagctataatacttcatg
aaactgtttctacatttgaacatgaatttgaggtaaagtctgtgttccta
ggccctggtcacccaaaatgatttcagaaaaactatcttgtattccctta
aggttagagatgtggttttgagtcaacacttttgacccaagaaagaggaa
catttctccagtttccctatgaagccattgatcatcatgagatcattctc
tcagacacctccacattaaagtaacaaatgcctctcatcttcagtgtctt
tctgatcagatgctcataaatttcctatgctaatagccctgccccttgct
ggcttcagcatttgggagagcagacccagcaccttgccttgggcagtgtt
ttagagctggccctggtagacaagttagttagcctccagtcctctagtcc
tgtagcattcaaatctctccagagtattggagttctgatatgtcaacccc
tttctgtaagcaatcgtcctttttttggagggggctaggagtgttgattt
ttttgagacaggatttctctgtgtaaccctggctttcctgggaactgggt
tctatagacagagctggcatcaaactcagatatcctcttgcctttgcttc
ccgaatactcagtttaaaggggtctgccactacatccaggctccatcagt
cttttcaagagctcttgtttacagagaaaagagtaaaaaggagtcttgtg
tcagcttatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58393253_58394415
seq2: B6Ng01-175O14.b_46_1224

seq1  GAATTCTATAATCATATATTACAGAATCCTATTCCTATTCTACCCCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATCATATATTACAGAATCCTATTCCTATTCTACCCCCTAT  50

seq1  AATAAGCTCTCAGTAAAATGAAAAGAAAAAGAACACTCACCAGCTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTCTCAGTAAAATGAAAAGAAAAAGAACACTCACCAGCTTGGCC  100

seq1  ATTAACAAACATCCTTGTAGAATGAGGCCCTAAGAAGTAGTTATAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAACATCCTTGTAGAATGAGGCCCTAAGAAGTAGTTATAAGGAA  150

seq1  GAGATATTATCAGCTCATCTCCCTCTAGACCCATAGTTATGTCATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTATCAGCTCATCTCCCTCTAGACCCATAGTTATGTCATCTGGA  200

seq1  GAAGGCAGTTCTGAACTTGAGGTTGTTAGAAAGTGCTATGCTCAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGTTCTGAACTTGAGGTTGTTAGAAAGTGCTATGCTCAAATGCA  250

seq1  AAAGTGAACTTTCCTAATCCCAAGAAAACAATAGAGTAGGAACAGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAACTTTCCTAATCCCAAGAAAACAATAGAGTAGGAACAGCTGAG  300

seq1  CTTTGAATTTCCCACATGTAAGCTATTCTCTGGAGGCCACATCTGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATTTCCCACATGTAAGCTATTCTCTGGAGGCCACATCTGTCTGT  350

seq1  GTAGATTAATTGATCCCAGTTCCTGTGAACAAAGCAGTAGTAACAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAATTGATCCCAGTTCCTGTGAACAAAGCAGTAGTAACAACATT  400

seq1  AATACCCACTTAAGAGAAACAGAAAAACATTTTAGATTCCTCCATGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCACTTAAGAGAAACAGAAAAACATTTTAGATTCCTCCATGGTAT  450

seq1  CCTTTGTTCTTCTAAATCATTTATGGTCAGTTCCATACATAATTGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCTTCTAAATCATTTATGGTCAGTTCCATACATAATTGACAAT  500

seq1  GGCTTTAGGTTCTCACCTAGAAATTAACAGCTCTTTTGATAAAATTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAGGTTCTCACCTAGAAATTAACAGCTCTTTTGATAAAATTAAGA  550

seq1  AAATGTCACCTCCTCCAAACACGCTTAGGAGAGAAATGTTTCTTACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACCTCCTCCAAACACGCTTAGGAGAGAAATGTTTCTTACAAAG  600

seq1  CAGATAGAAGTGAGAAAATGTAACTGTATTTTCAGGAGAAACTGGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAAGTGAGAAAATGTAACTGTATTTTCAGGAGAAACTGGGCTGT  650

seq1  GGGCCTGGGATATAGCTCAGTTCATAGATTACATGCCTAGAAAGTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGATATAGCTCAGTTCATAGATTACATGCCTAGAAAGTATTCT  700

seq1  GTATTTAGGACACAATGAAATAAGTCAAACCTTCAAGTTATAGGCACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGGACACAATGAAATAAGTCAAACCTTCAAGTTATAGGCACAGG  750

seq1  TGATGGAAAATAATCCCAAGTCAATGGCAAACATAAGGCATTCAATAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAAATAATCCCAAGTCAATGGCAAACATAAGGCATTCAATAAGA  800

seq1  CCATACAATAAACCAACCCGAAGACATACCTATATAACACAAGAAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAATAAACCAACCCGAAGACATACCTATATAACACAAGAAACACA  850

seq1  GAGACCACATAAAAAGACAAGACTAGAATAAAAAATTTCCATGCATCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACATAAAAAGACAAGACTAGAATAAAAAATTTCCATGCATCTTA  900

seq1  TAGAGAAAACACTAAAT-ATACAGAATTAAAAAGT-GGAATGCTAGCTCT  948
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TAGAGAAAACACTAAATAATACAGAATTAAAAAGTGGGAATGCTAGCTCT  950

seq1  GTTAAGTCACAAATAAATAAAA--CCCATTAA-GTGG--AAAAATGAACT  993
      ||||||||||||||||||||||  || ||||| ||||  |||| ||||||
seq2  GTTAAGTCACAAATAAATAAAAACCCAATTAAGGTGGGAAAAATTGAACT  1000

seq1  TT--CCAAA-TTAGAAGAAAA--TGGTTGAGTTGGAACAG-CTGATTTCT  1037
      ||  ||||| |||||||||||   ||||||||| |||||| |||||||||
seq2  TTTCCCAAATTTAGAAGAAAAATGGGTTGAGTT-GAACAGCCTGATTTCT  1049

seq1  --CCAGGAGTTCTGTAGGCTTCTTGTATGTTCAT-GGGCATCTCTTTCCT  1084
        | |||||||||||| ||||||||||||||||| ||||||||  || | 
seq2  TCCAAGGAGTTCTGTA-GCTTCTTGTATGTTCATGGGGCATCTTCTTTCG  1098

seq1  TAGGTTTGGGAAG--TTTTCTTCTATAATTTTG-TTGAAG-ATATTTG-C  1129
      |||  ||||||||  ||| |||||||||||||| |||||| ||||||| |
seq2  TAG--TTGGGAAGGTTTTCCTTCTATAATTTTGTTTGAAGAATATTTGCC  1146

seq1  TGGCCCTTTAAGTTGAAAATCTTCATTCTCATCT  1163
      ||| ||||| ||||||||||||||  ||||||||
seq2  TGGTCCTTT-AGTTGAAAATCTTCCATCTCATCT  1179

seq1: chr6_58527358_58528418
seq2: B6Ng01-175O14.g_60_1122 (reverse)

seq1  ATCTATAAACTGACAACAAACTCCTTTTTTAACTCTTTCTCCTGTAAACA  50
      |||||||| ||||||  | ||||||||||  |||||||   |||||||||
seq2  ATCTATAAGCTGACACAAGACTCCTTTTT--ACTCTTTTCTCTGTAAACA  48

seq1  AGAGCTCCTGAAAAGACTGATGGAGCCTGGATGTAGTGGCAGACCCCTTT  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTTGAAAAGACTGATGGAGCCTGGATGTAGTGGCAGACCCCTTT  98

seq1  AAACTGAGTATTCGGGAAGCAAAGGCAAGAGGATATCTGAGTTTGATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGTATTCGGGAAGCAAAGGCAAGAGGATATCTGAGTTTGATGCC  148

seq1  AGCTCTGTCTATAGAA-CCAGTT-CCAGGAAAGCCAGGGTTACACAGAGA  198
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AGCTCTGTCTATAGAACCCAGTTCCCAGGAAAGCCAGGGTTACACAGAGA  198

seq1  AATCCTGTCTC-AAAAAATCAACACTCCTAGCCCCCTCC-AAAAAAGGAC  246
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AATCCTGTCTCAAAAAAATCAACACTCCTAGCCCCCTCCAAAAAAAGGAC  248

seq1  GATTGCTTACAGAAAGGGGTTGACATATCAGAACTCCAATACTCTGGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTACAGAAAGGGGTTGACATATCAGAACTCCAATACTCTGGAGA  298

seq1  GATTTGAATGCTACAGGACTAGAGGACTGGAGGCTAACTAACTTGTCTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATGCTACAGGACTAGAGGACTGGAGGCTAACTAACTTGTCTAC  348

seq1  CAGGGCCAGCTCTAAAACACTGCCCAAGGCAAGGTGCTGGGTCTGCTCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGCTCTAAAACACTGCCCAAGGCAAGGTGCTGGGTCTGCTCTC  398

seq1  CCAAATGCTGAAGCCAGCAAGGGGCAGGGCTATTAGCATAGGAAATTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTGAAGCCAGCAAGGGGCAGGGCTATTAGCATAGGAAATTTAT  448

seq1  GAGCATCTGATCAGAAAGACACTGAAGATGAGAGGCATTTGTTACTTTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTGATCAGAAAGACACTGAAGATGAGAGGCATTTGTTACTTTAA  498

seq1  TGTGGAGGTGTCTGAGAGAATGATCTCATGATGATCAATGGCTTCATAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTGTCTGAGAGAATGATCTCATGATGATCAATGGCTTCATAGG  548

seq1  GAAACTGGAGAAATGTTCCTCTTTCTTGGGTCAAAAGTGTTGACTCAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGAGAAATGTTCCTCTTTCTTGGGTCAAAAGTGTTGACTCAAAA  598

seq1  CCACATCTCTAACCTTAAGGGAATACAAGATAGTTTTTCTGAAATCATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTCTAACCTTAAGGGAATACAAGATAGTTTTTCTGAAATCATTT  648

seq1  TGGGTGACCAGGGCCTAGGAACACAGACTTTACCTCAAATTCATGTTCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACCAGGGCCTAGGAACACAGACTTTACCTCAAATTCATGTTCAA  698

seq1  ATGTAGAAACAGTTTCATGAAGTATTATAGCTTTATAGAACAAAAAGTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAACAGTTTCATGAAGTATTATAGCTTTATAGAACAAAAAGTCA  748

seq1  TAAATCAAAGCAAGTTTAAAAAACCTTGGAGTTATAGCAGAGAAGTAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAAGCAAGTTTAAAAAACCTTGGAGTTATAGCAGAGAAGTAGGT  798

seq1  ACATAGAAATTGCAGAATCTTTTTTATACGCCCAAGATACTATTTAATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAATTGCAGAATCTTTTTTATACGCCCAAGATACTATTTAATAA  848

seq1  CCTGCTTAGTTTTGAGGTTGGTAGACGCTTGCAGTCTGGTAAATTAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTAGTTTTGAGGTTGGTAGACGCTTGCAGTCTGGTAAATTAATAA  898

seq1  ATTTTTATCCATTAGTCACAGGATGTTAGTTCTGACACCACGGCAAGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCCATTAGTCACAGGATGTTAGTTCTGACACCACGGCAAGATT  948

seq1  AATACTTGCCCAAGATAAGGTATTTAGCTTCTGGACTTACCACATTCCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGCCCAAGATAAGGTATTTAGCTTCTGGACTTACCACATTCCAG  998

seq1  TCTTTCCACAGTGCTGAAATTCTAGTCACTCAGTTTCTGCAAATACAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACAGTGCTGAAATTCTAGTCACTCAGTTTCTGCAAATACAGCT  1048

seq1  ATCTTTTGGGAATTC  1061
      |||||||||||||||
seq2  ATCTTTTGGGAATTC  1063