BAC Information

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BAC

Clone NameB6Ng01-176B14
Chromosome6 (Build37)
Map Location 94,133,603 - 94,272,536
singlet/doubletdoublet
Overlap geneMagi1
Upstream geneLOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B14.bB6Ng01-176B14.g
ACCGA003727GA003728
length1,1781,110
definitionB6Ng01-176B14.b B6Ng01-176B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,133,603 - 94,134,795)(94,271,430 - 94,272,536)
sequence
gaattcacaagtagtttttcaggctgaaccaggagcgctgcttacactga
aactagaagacgccacttgtcaagggcgagtgggaagaaataatgcattg
ttttctcccagactcaactgctcctccagcctgcaggaatcccaactgtt
ctcatttcctctcccggcactgccaccataacaaaagcttggccttggtc
cctccattcaactgtgtccttccacctggaaagattctgaaactgcagtt
cataggcaactagtctcttggctgaggttctaaacacttaaaacttgcaa
ggtcgccttttaaggctggaaggtgtagttccttctttccaaaataacta
ccttctcaaataaaatccaaccacaatgggagctgtggtgtaaggaaaac
ggccacttgtgatgtgtctgtcattacaggctgtaagtgagacaatgcac
tcttgtattcagaagcaccctcaacatgaaccaaacagttataatcacag
atgcagtcagcgttagccttgtggaatatggtaatatgtgagtggggcct
gcaagtctgtcttagatcactttcagcagtcaatgacaaatacctgtgac
aatgaacctgtgtacagagagagcaacctcctccgagcaacctatctttt
cttctccatctaacacaaagttgctatgcagagcagtgcccctccctcca
ccccagcaaacccagggaactctgccactgcacagacagagaacacaata
aaggaaaaggagtttacatctattccagagtcgaggcaatccacacaaga
caatgcagaacaccacctcctcagcaacttgaatccttttgatggtgcaa
gaacaccgtaaaagatgaaaaccacaactaccattcgcaagctaaacacc
acaaaccacaacagaggctctgcataaagctcagtggtggggtgcttact
agaagtcaccagccctggctgaatccccagaacccaaaccaaacaaaggc
ctcacactccaaaccaaatcagcttaactaactcagagttagaggtgcgg
gaccaccagaacgttacagaatgaaagtgccttagtcagaagctggatca
ggaaagagataaatgagacacctcataccttctaatttcatgtctactca
ggaaattcctactcgcctgccagctagc

gaattccaggcacgcactgtgcagctggctatcatcaagaatgatgtcct
gttgtgaccagatattaaaagtttgatcagcaatggtgaacttccataga
tttaggcaataaaatgaaacatcctctcagattaagatttttattatcat
ccctctgagggtgtggagttggtcagatattctttattttggatccaggc
cacctacaacttcagaatgcattctgaagttcatttatctcttgggtcat
tcaaatattgaaaatggcatttaaaaatataacatacaactgagctgatt
tttgtcttgcaattcctctagtacgtttccatttccactcatcattaggg
aatttttgtttgaaatccaaaattccctaatgagctcagtctcttgatag
cctcaacataacattcaacctgatttaaagtttttcttgttttacaatgt
gatttatgtgccaactgacacatatcacaggcggtgactgatacccacta
tgactggggagtctgggagcaataattttatgtagagtcagttatgagtg
aagggaaatattcttacctcagaggggatgatgaaagagataattatcat
ttgtacaatgtctcaaggtcttttgacgaaagggtccattcgggtccaca
agtcatttttttttttgatggactctgtcatatttcacattttcttgata
gtacatggagtgccaccactttaggttgttttctcagaagctgatgaagg
tgggtgcaaataaaagacactgatttccttgccctcggctacaattatgg
gtcctgtcaacagaatgagacagaaagaagtttcctagcccgaacatgga
ggtgcacacctgttatttccgtcactggggaagttgaggcaggatgacaa
tgtgttctgggctagcctgggctatacagtaagacctcatcttctccaaa
ttcaaaaacttcctagcctttgccacactgttgcttttctctggattact
acatgaaccagtttattatattcatttttgtgttattattttggtttatt
aggtacatggtattgtcgacttgacctgaagttaaatcacatgaaaacat
acttcgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94133603_94134795
seq2: B6Ng01-176B14.b_45_1222

seq1  GAATTCACAAGTAGTTTTTCAGGCTGAACCAGGAGCGCTGCTTACACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGTAGTTTTTCAGGCTGAACCAGGAGCGCTGCTTACACTGA  50

seq1  AACTAGAAGACGCCACTTGTCAAGGGCGAGTGGGAAGAAATAATGCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGACGCCACTTGTCAAGGGCGAGTGGGAAGAAATAATGCATTG  100

seq1  TTTTCTCCCAGACTCAACTGCTCCTCCAGCCTGCAGGAATCCCAACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCAGACTCAACTGCTCCTCCAGCCTGCAGGAATCCCAACTGTT  150

seq1  CTCATTTCCTCTCCCGGCACTGCCACCATAACAAAAGCTTGGCCTTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCCTCTCCCGGCACTGCCACCATAACAAAAGCTTGGCCTTGGTC  200

seq1  CCTCCATTCAACTGTGTCCTTCCACCTGGAAAGATTCTGAAACTGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTCAACTGTGTCCTTCCACCTGGAAAGATTCTGAAACTGCAGTT  250

seq1  CATAGGCAACTAGTCTCTTGGCTGAGGTTCTAAACACTTAAAACTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCAACTAGTCTCTTGGCTGAGGTTCTAAACACTTAAAACTTGCAA  300

seq1  GGTCGCCTTTTAAGGCTGGAAGGTGTAGTTCCTTCTTTCCAAAATAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCCTTTTAAGGCTGGAAGGTGTAGTTCCTTCTTTCCAAAATAACTA  350

seq1  CCTTCTCAAATAAAATCCAACCACAATGGGAGCTGTGGTGTAAGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAAATAAAATCCAACCACAATGGGAGCTGTGGTGTAAGGAAAAC  400

seq1  GGCCACTTGTGATGTGTCTGTCATTACAGGCTGTAAGTGAGACAATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTGTGATGTGTCTGTCATTACAGGCTGTAAGTGAGACAATGCAC  450

seq1  TCTTGTATTCAGAAGCACCCTCAACATGAACCAAACAGTTATAATCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTCAGAAGCACCCTCAACATGAACCAAACAGTTATAATCACAG  500

seq1  ATGCAGTCAGCGTTAGCCTTGTGGAATATGGTAATATGTGAGTGGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCAGCGTTAGCCTTGTGGAATATGGTAATATGTGAGTGGGGCCT  550

seq1  GCAAGTCTGTCTTAGATCACTTTCAGCAGTCAATGACAAATACCTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGTCTTAGATCACTTTCAGCAGTCAATGACAAATACCTGTGAC  600

seq1  AATGAACCTGTGTACAGAGAGAGCAACCTCCTCCGAGCAACCTATCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTGTGTACAGAGAGAGCAACCTCCTCCGAGCAACCTATCTTTT  650

seq1  CTTCTCCATCTAACACAAAGTTGCTATGCAGAGCAGTGCCCCTCCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATCTAACACAAAGTTGCTATGCAGAGCAGTGCCCCTCCCTCCA  700

seq1  CCCCAGCAAACCCAGGGAACTCTGCCACTGCACAGACAGAGAACACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAAACCCAGGGAACTCTGCCACTGCACAGACAGAGAACACAATA  750

seq1  AAGGAAAAGGAGTTTACATCTATTCCAGAGTCGAGGCAATCCACACAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGGAGTTTACATCTATTCCAGAGTCGAGGCAATCCACACAAGA  800

seq1  CAATGCAGAACACCACCTCCTCAGCAACTTGAATCCTTTTGATGGTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGAACACCACCTCCTCAGCAACTTGAATCCTTTTGATGGTGCAA  850

seq1  GAACACCGTAAAAGATGAAAACCACAACTACCATTCGCAAGCTAAACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCGTAAAAGATGAAAACCACAACTACCATTCGCAAGCTAAACACC  900

seq1  ACAAACCACAACAGAGGCTCTGCATAAAGCTCAGTGGTGGGGTGCTTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACAACAGAGGCTCTGCATAAAGCTCAGTGGTGGGGTGCTTACT  950

seq1  AGAAGTCACCCAGCCCTGGGCTGAATCCCCAGAACCCAAACCAAACAAAG  1000
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AGAAGTCA-CCAGCCCT-GGCTGAATCCCCAGAACCCAAACCAAACAAAG  998

seq1  GCCTCACACTCCAAACCAAATCAGC-TAACTAACTCAGAGTAAGAAGGTG  1049
      ||||||||||||||||||||||||| ||||||||||||||| || |||||
seq2  GCCTCACACTCCAAACCAAATCAGCTTAACTAACTCAGAGTTAG-AGGTG  1047

seq1  CGGGA-CACCAGACAGTTACAGAATGGAAAGTGGCCTAAGTCAGAAAGCC  1098
      ||||| |||||||  |||||||||| |||||| |||| |||||| |||| 
seq2  CGGGACCACCAGAACGTTACAGAAT-GAAAGT-GCCTTAGTCAG-AAGC-  1093

seq1  TGGGATCAGGAGAAGAGATAAAATGAGACACCTCATAACTTTCTATTCTA  1148
        ||||||||| ||||||| ||||||||||||||||| |||   |||  |
seq2  -TGGATCAGGA-AAGAGAT-AAATGAGACACCTCATACCTTCTAATTTCA  1140

seq1  TGTTCTAACCTTTCAGGAGA-TCCTACTCCAACCTTGCCAGCTAGC  1193
      || ||||     |||||| | ||||||||    | |||||||||||
seq2  TG-TCTA----CTCAGGAAATTCCTACTC---GCCTGCCAGCTAGC  1178


seq1: chr6_94271430_94272536
seq2: B6Ng01-176B14.g_70_1179 (reverse)

seq1  CACCCGAGGTATGTTTTCATGGTGATTTTAACTTCA-GTCAAGTCGACAA  49
      ||||||| |||||||||||| |||| |||||||||| |||||||||||||
seq2  CACCCGAAGTATGTTTTCAT-GTGA-TTTAACTTCAGGTCAAGTCGACAA  48

seq1  TACCATGTACCTAATAAA-CAAAATAATAACACAAAAATGAATATAATAA  98
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACCATGTACCTAATAAACCAAAATAATAACACAAAAATGAATATAATAA  98

seq1  ACTGGTTCATGTAGTAATCCAGAGAAAAGCAACAGTGTGGCAAAGGCTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCATGTAGTAATCCAGAGAAAAGCAACAGTGTGGCAAAGGCTAG  148

seq1  G-AGTTTTTTGATTTGGAGAAGATGAGGTCTTACTGTATAGCCCAGGCTA  197
      | |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTTGAATTTGGAGAAGATGAGGTCTTACTGTATAGCCCAGGCTA  198

seq1  GCCCAGAACACATTGTCATCCTGCCTCAACTTCCCCAGTGACGG-AATTA  246
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  GCCCAGAACACATTGTCATCCTGCCTCAACTTCCCCAGTGACGGAAATAA  248

seq1  CAGGTGTGCACCTCCATGTTCGGGCTAGG-AACTTCTTTCTGTCTCATTC  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGTGTGCACCTCCATGTTCGGGCTAGGAAACTTCTTTCTGTCTCATTC  298

seq1  TGTTGACAGGACCCATAATTGTAGCCGAGGGCAAGGAAATCAGTGTCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGGACCCATAATTGTAGCCGAGGGCAAGGAAATCAGTGTCTTT  348

seq1  TATTTGCACCCACCTTCATCAGCTTCTGAGAAAACAACCTAAAGTGGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCACCCACCTTCATCAGCTTCTGAGAAAACAACCTAAAGTGGTGG  398

seq1  CACTCCATGTACTATCAAGAAAATGTGAAATATGACAGAGTCCATCAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATGTACTATCAAGAAAATGTGAAATATGACAGAGTCCATCAAAA  448

seq1  AAAAAAATGACTTGTGGACCCGAATGGACCCTTTCGTCAAAAGACCTTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGACTTGTGGACCCGAATGGACCCTTTCGTCAAAAGACCTTGA  498

seq1  GACATTGTACAAATGATAATTATCTCTTTCATCATCCCCTCTGAGGTAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTACAAATGATAATTATCTCTTTCATCATCCCCTCTGAGGTAAG  548

seq1  AATATTTCCCTTCACTCATAACTGACTCTACATAAAATTATTGCTCCCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCCCTTCACTCATAACTGACTCTACATAAAATTATTGCTCCCAG  598

seq1  ACTCCCCAGTCATAGTGGGTATCAGTCACCGCCTGTGATATGTGTCAGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAGTCATAGTGGGTATCAGTCACCGCCTGTGATATGTGTCAGTT  648

seq1  GGCACATAAATCACATTGTAAAACAAGAAAAACTTTAAATCAGGTTGAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAAATCACATTGTAAAACAAGAAAAACTTTAAATCAGGTTGAAT  698

seq1  GTTATGTTGAGGCTATCAAGAGACTGAGCTCATTAGGGAATTTTGGATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTGAGGCTATCAAGAGACTGAGCTCATTAGGGAATTTTGGATTT  748

seq1  CAAACAAAAATTCCCTAATGATGAGTGGAAATGGAAACGTACTAGAGGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAATTCCCTAATGATGAGTGGAAATGGAAACGTACTAGAGGAA  798

seq1  TTGCAAGACAAAAATCAGCTCAGTTGTATGTTATATTTTTAAATGCCATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGACAAAAATCAGCTCAGTTGTATGTTATATTTTTAAATGCCATT  848

seq1  TTCAATATTTGAATGACCCAAGAGATAAATGAACTTCAGAATGCATTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTGAATGACCCAAGAGATAAATGAACTTCAGAATGCATTCTG  898

seq1  AAGTTGTAGGTGGCCTGGATCCAAAATAAAGAATATCTGACCAACTCCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAGGTGGCCTGGATCCAAAATAAAGAATATCTGACCAACTCCAC  948

seq1  ACCCTCAGAGGGATGATAATAAAAATCTTAATCTGAGAGGATGTTTCATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGAGGGATGATAATAAAAATCTTAATCTGAGAGGATGTTTCATT  998

seq1  TTATTGCCTAAATCTATGGAAGTTCACCATTGCTGATCAAACTTTTAATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCTAAATCTATGGAAGTTCACCATTGCTGATCAAACTTTTAATA  1048

seq1  TCTGGTCACAACAGGACATCATTCTTGATGATAGCCAGCTGCACAGTGCG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCACAACAGGACATCATTCTTGATGATAGCCAGCTGCACAGTGCG  1098

seq1  TGCCTGGAATTC  1107
      ||||||||||||
seq2  TGCCTGGAATTC  1110


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