BAC Information

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BAC

Clone NameB6Ng01-176E02
Chromosome6 (Build37)
Map Location 3,525,219 - 3,526,428
singlet/doubletsinglet
Overlap geneCcdc132
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662
Downstream geneCalcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176E02.bB6Ng01-176E02.g
ACCGA003839GA003840
length1,1821,176
definitionB6Ng01-176E02.b B6Ng01-176E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttataatttctgtgtatccttcttaaataattgaaactcttat
ttgatacatctgggaggtgggagccacacggagtggaaaggcacattatt
acagaaagggtaaaaataaaaagtccaaaataccaaagaactcacacaca
gaggatctggccagacccaaaaggaaaacaaaaggaaaggaaaggaaaag
ttacctctctcagctgaagtcagggttcagaaaggtagacagagtcctaa
agccccatgttgggctgcgctagggcttgtgcaagaagcctgggagggag
gactgtatcgcctcattcaagactaactatccccctagctgtttagcaca
ggccacggtgaacctgcctttttgagtggtcccttggccacgtgcttgga
tttatgtttagggaggcttgaaatgttgggtctcttttcaggctagagaa
atagtttaataggcctccatagtagctgtgatcaagcctaccacatattc
tcccttatgaagaggtaacactgaaaaatcacttaggagataaagtgagg
ctgaggaatagacataacctatttctaatgaaaatctggagatccatttc
caaaactgtctaccagacagagtctgggctacagtttccattcctactgt
gacatagagcctcaagcagggtgttcatttagagagagatgagaaaacag
agctgtcttctggctctcttagccagagaaccaaaaacatcatggaactg
ctgccctggggaagcctttcaccaagtctgcctgtccagtgcttgctcct
gttctcatcagcttcccctctgaagactccctaactggcatttaggctgc
tatcttactttttcaagctcagtgggattgccagatatgacactggggat
acctgtccagaggggctgtctaggtgaccctgagagtagcttagtagtcc
cagttgtctaatgagcagtatagggatgaaaggtgttattggctgtgcct
gctagagatatgagagataagcagagagacttgtgagaactgagtgaagc
cctttgagcagagacatgttcatcacactaggatagaaataggcatgtgt
catgcaacttgccttaacatttatagactaggcagagaacaggaaccgag
ctctcgagttctggagtccactggaaatctct
gaattctttctaaggggttataacggcctctgttggatcagtccacactt
tcctggcctcctttaataatattgacttgctcaaaaaggccccatcttca
aacaaaattttcatgggatgtatcatttcagcttatgcatgagtaactag
ggtaggcatttaatccctgatctccaatgtgtgtagttttatgccaactt
gacacaaacttgagttattgttgggagccgcgcccacattcgccgttaca
agatggcgctgacagctgtgttctaagtggtaaacaaataatctgcgcat
gtgccgagggtggttctccactccatgtgctctgccttccccgtgacgtc
aactcggccgatgggctgcagccaatcagggagtgacacgtcctaggcga
aggataattctccttaatagggacggggtttcgttttctctcgctcttgc
ttcttacactcttgctcctgaagatgtaagcaataaagttttgccgcaga
agattttggtctgttgtgttcttcctggccgggcgtgagaacgcgctaat
aacaattggtgccgaattccgggacgagaaaaaactcgggactggcgcaa
ggaagatccctcattccagaaccagaactgcgggtctcggtaataaaggt
tcccgtaaagcagactgttaagaaggattcaactgtatgaattcagaact
tttcagctggggaacgagagtaccagtgagtacagctttacgaggtaagt
ctggtcttgaactttctaaaggaaattcaagacagtctatcagaagtaaa
gtggaaaatgtttggccttgaattttttctagtgttagaagcccttttgt
tccttttcacatgttatcaagtggtttaaggcagggcgggattctagatg
aaattcagacaatctatcagaagtaaagcgggagagagagtaggagcaaa
gagaaaatatgggtacacaaaatagcgtacagggcctttccacggtcttg
aacctgagaaaagttagtcagtaagaatactggggagagattagagaaga
aagaaagaaggaaaaggatcaatttagcgagtctctagaaaaggagcctg
gtgctccatcgctgattgctcgggatcagctcttggttagcttcttgatt
cgaaatgagatgtgaaatttcttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3525219_3526428
seq2: B6Ng01-176E02.b_45_1226

seq1  GAATTCTTTATAATTTCTGTGTATCCTTCTTAAATAATTGAAACTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAATTTCTGTGTATCCTTCTTAAATAATTGAAACTCTTAT  50

seq1  TTGATACATCTGGGAGGTGGGAGCCACACGGAGTGGAAAGGCACATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATCTGGGAGGTGGGAGCCACACGGAGTGGAAAGGCACATTATT  100

seq1  ACAGAAAGGGTAAAAATAAAAAGTCCAAAATACCAAAGAACTCACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGGTAAAAATAAAAAGTCCAAAATACCAAAGAACTCACACACA  150

seq1  GAGGATCTGGCCAGACCCAAAAGGAAAACAAAAGGAAAGGAAAGGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTGGCCAGACCCAAAAGGAAAACAAAAGGAAAGGAAAGGAAAAG  200

seq1  TTACCTCTCTCAGCTGAAGTCAGGGTTCAGAAAGGTAGACAGAGTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTCTCAGCTGAAGTCAGGGTTCAGAAAGGTAGACAGAGTCCTAA  250

seq1  AGCCCCATGTTGGGCTGCGCTAGGGCTTGTGCAAGAAGCCTGGGAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATGTTGGGCTGCGCTAGGGCTTGTGCAAGAAGCCTGGGAGGGAG  300

seq1  GACTGTATCGCCTCATTCAAGACTAACTATCCCCCTAGCTGTTTAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATCGCCTCATTCAAGACTAACTATCCCCCTAGCTGTTTAGCACA  350

seq1  GGCCACGGTGAACCTGCCTTTTTGAGTGGTCCCTTGGCCACGTGCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGGTGAACCTGCCTTTTTGAGTGGTCCCTTGGCCACGTGCTTGGA  400

seq1  TTTATGTTTAGGGAGGCTTGAAATGTTGGGTCTCTTTTCAGGCTAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTAGGGAGGCTTGAAATGTTGGGTCTCTTTTCAGGCTAGAGAA  450

seq1  ATAGTTTAATAGGCCTCCATAGTAGCTGTGATCAAGCCTACCACATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAATAGGCCTCCATAGTAGCTGTGATCAAGCCTACCACATATTC  500

seq1  TCCCTTATGAAGAGGTAACACTGAAAAATCACTTAGGAGATAAAGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATGAAGAGGTAACACTGAAAAATCACTTAGGAGATAAAGTGAGG  550

seq1  CTGAGGAATAGACATAACCTATTTCTAATGAAAATCTGGAGATCCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATAGACATAACCTATTTCTAATGAAAATCTGGAGATCCATTTC  600

seq1  CAAAACTGTCTACCAGACAGAGTCTGGGCTACAGTTTCCATTCCTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTCTACCAGACAGAGTCTGGGCTACAGTTTCCATTCCTACTGT  650

seq1  GACATAGAGCCTCAAGCAGGGTGTTCATTTAGAGAGAGATGAGAAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAGCCTCAAGCAGGGTGTTCATTTAGAGAGAGATGAGAAAACAG  700

seq1  AGCTGTCTTCTGGCTCTCTTAGCCAGAGAACCAAAAACATCATGGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTCTGGCTCTCTTAGCCAGAGAACCAAAAACATCATGGAACTG  750

seq1  CTGCCCTGGGGAAGCCTTTCACCAAGTCTGCCTGTCCAGTGCTTGCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGGGAAGCCTTTCACCAAGTCTGCCTGTCCAGTGCTTGCTCCT  800

seq1  GTTCTCATCAGCTTCCCCTCTGAAGACTCCCTAACTGGCATTTAGGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATCAGCTTCCCCTCTGAAGACTCCCTAACTGGCATTTAGGCTGC  850

seq1  TATCTTACTTTTTCAAGCTCAGTGGGATTGCCAGATATGACACTGGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACTTTTTCAAGCTCAGTGGGATTGCCAGATATGACACTGGGGAT  900

seq1  ACCTGTCCAGAGGGGCTGTCTAGGTGACCCTGAGAGTAGCTTAGTAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCAGAGGGGCTGTCTAGGTGACCCTGAGAGTAGCTTAGTAGTCC  950

seq1  CAGTTGTCTAATGAGCAGGTATAGGGATGAAAGGGTGTTATTGGCTGGTG  1000
      ||||||||||||||||| |||||||||||||| ||||||||||||| |||
seq2  CAGTTGTCTAATGAGCA-GTATAGGGATGAAA-GGTGTTATTGGCT-GTG  997

seq1  CCTGGCTAGAGATATGAGGAAGATAAAGGCAAGAGAGGACTGTGGAGAAC  1050
      ||| ||||||||||||||  ||||||  || ||||| ||||   ||||||
seq2  CCT-GCTAGAGATATGAG--AGATAA--GC-AGAGA-GACTTGTGAGAAC  1040

seq1  TGAAGTTGGAGCCCTTTGAGCAGAGGACATGGTTCATCACACTAGGAATA  1100
      |||   || ||||||||||||||| ||||| ||||||||||||||| |||
seq2  TGA--GTGAAGCCCTTTGAGCAGA-GACAT-GTTCATCACACTAGG-ATA  1085

seq1  GGAAATAGGCATGTGTTCATGCA--CTGGCTTACCATTATAAGACCTAGG  1148
       |||||||||||||| |||||||   || |||| ||||   ||| |||||
seq2  -GAAATAGGCATGTG-TCATGCAACTTGCCTTAACATTTATAGA-CTAGG  1132

seq1  CAGAGAACCAGGAGACCCCGGAAGCTTCTCAGAGGTTTTCCTGAAGTCCA  1198
      ||||||| ||||| |||     ||| |||| |||    | ||| ||||||
seq2  CAGAGAA-CAGGA-ACC----GAGC-TCTC-GAG----TTCTGGAGTCCA  1170

seq1  CTGAGAATCTCT  1210
      |||  |||||||
seq2  CTGGAAATCTCT  1182