BAC Information

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BAC

Clone NameB6Ng01-176P17
Chromosome6 (Build37)
Map Location 110,823,593 - 111,003,688
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P17.bB6Ng01-176P17.g
ACCGA004375GA004376
length1,0901,050
definitionB6Ng01-176P17.b B6Ng01-176P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,002,621 - 111,003,688)(110,823,593 - 110,824,642)
sequence
gaattcctgaacacacatggtagcttacagccatgtataactccagttct
agggaatccaatgctctcttctgttctccatgggtagcatacacacccat
gtgacacacagataacacatccaggcaaaacattcacgcacatcctagaa
taatagggataataggatattatgtcagtgtggggatcaatctaaagggg
ttcaaatatacttcagaggttactgtgctcagttatagatgtgatgccat
atcctactgcctaacctccctcaacattatgggaaaatgtatgaactcag
tgttttgaccattaattattgatctattcattatattcactctctcccat
aacaacttttcatttattgcaaagagttttgatacatttatgttaatttc
tattgttcatttttgtggtatggacattgaaaccagggcatcaagcatac
cttatacacaccttccaccactaatctaactctccagccctgtctgtatt
cttgttcaagctgcaccatgtgcaacaagatgaagtgcagatactcatct
ttcttgtagatgaggtgacttgggcttagaaatcaagcagatttgtttag
tcctccatagctaggggcaaccctaagggaaacctgagagattttcatct
tcagcccagaaatactgccatcccagctgtgatgagggttttccctcatc
tgctgccctcaggctttgctctatcccatcctgtccccgtcctggtattc
atcaacacagcagaacgaatgcaatactgccagttcctgtatggtcttct
aggctgctaagctcttctgaatagtgagccttttttgataactcttttca
taacaatcagttttctatagtgattttgggggcagacatgttactttcaa
cctcttctattatttttcctatgcatgtcttcataaaaggaaaatagaaa
ggatcaattatccttttcagtagtaaaggagaagcaatctataattgcag
aagctataggtttgtttatatgctgttgaatgaacttgtttggattgtct
gaatttaaatttctaataacaggaaatatgcagaaatatt

gaattccaccctaggaccctcatgtaggagaaaactgactcctactagtt
gtcctttgacatcacacacacattcatgtacagaataaaaacacagtaat
tttgaattgctaagaaggaagttagtattcatttaataaatctcaatgaa
gagagagctaacatgtttatattccatataaacctctgacaagctgggca
gtggtggtgcccacctttaaatccagcacttggaaggcagatgcaggcag
atttctgagttcgaggctagcctggtctactgagtgagttccaggacagc
cagagctacacagagaaaccctgtcttgaaaaaataaaaataaaataaaa
taaacctctgacaaatggaaactgaatagatttttttttttcacccagga
acaaattgtttgtgttctgtgagaattcatgttttgggatactctcttca
acatgacatctgataactggaataaaggataagaaaggggacaatatttg
ttttaacttttctatggaatattagtgagtgacagaaaggtggggagaga
gcacagcaacttgagtatttactgaaaaggaaacaagagcctgtatgggt
cagccactctccagttagcatccatgagagtgagccggagtcatactcga
ctgactctttgataagtagaaatggtatttgggttgtgattggaaccagg
tagactttaacaggaactgttgcttcagtgtgttccccatgccctggagt
cttccatatcctatattttagagccaaaactacatgtttaagaattctac
tagaaactgactgactcccaaggggatgtatttgggtggctgtagacaat
attgggagtctgagaatatgtacagaaaggattttcataattataaacgt
tagtcattttgtatttgactctaatgaagtgcatcttgaatattttttgt
tgctattacaaaattcctgagactaaaatagtatgtaaaaaagaagcttg
ttgtctcttggggaatggtattccataaagatggcatgagttggcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111002621_111003688
seq2: B6Ng01-176P17.b_47_1136 (reverse)

seq1  AATA-TTCTGCATATTT-CTGT--ATAGAA--TTAAATTCAGACAAT-CA  43
      |||| |||||||||||| ||||   |||||  ||||||||||||||| ||
seq2  AATATTTCTGCATATTTCCTGTTATTAGAAATTTAAATTCAGACAATCCA  50

seq1  AAC-AGTTCA-TCAACAGCATAT-AACAAACCTATAGC-TCTGCA--TAT  87
      ||| |||||| |||||||||||| |||||||||||||| ||||||  |||
seq2  AACAAGTTCATTCAACAGCATATAAACAAACCTATAGCTTCTGCAATTAT  100

seq1  AGATTGCTTCTCCTTTACTACTG-AAAGGAT-ATTGATCC-TTCTATTTT  134
      ||||||||||||||||||||||| ||||||| |||||||| |||||||||
seq2  AGATTGCTTCTCCTTTACTACTGAAAAGGATAATTGATCCTTTCTATTTT  150

seq1  CCTTTTATGAAGACATGCATAGG-AAAATAATAG-AGAGGTTG-AAGTAA  181
      ||||||||||||||||||||||| |||||||||| |||||||| ||||||
seq2  CCTTTTATGAAGACATGCATAGGAAAAATAATAGAAGAGGTTGAAAGTAA  200

seq1  CATGTCTGCCCCC-AAATCACTATAGAAAACTGATTGTTATG-AAAGAGT  229
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CATGTCTGCCCCCAAAATCACTATAGAAAACTGATTGTTATGAAAAGAGT  250

seq1  TATC-AAAAAGGCTCACTATTCAGAAGAGCTTAGCAGCCTAGAAGACCAT  278
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAAAGGCTCACTATTCAGAAGAGCTTAGCAGCCTAGAAGACCAT  300

seq1  ACAGGAACTGGCAGTATTGCATTCGTTCTGCTGTGTTGATGAATACCAGG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTGGCAGTATTGCATTCGTTCTGCTGTGTTGATGAATACCAGG  350

seq1  ACGGGGACAGGATGGGATAGAGCAAAGCCTGAGGGCAGCAGATGAGGGAA  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGACAGGATGGGATAGAGCAAAGCCTGAGGGCAGCAGATGAGGGAA  400

seq1  AACCCTCATCACAGCTGGGATGGCAGTATTTCTGGGCTGAAGATGAAAAT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCATCACAGCTGGGATGGCAGTATTTCTGGGCTGAAGATGAAAAT  450

seq1  CTCTCAGGTTTCCCTTAGGGTTGCCCCTAGCTATGGAGGACTAAACAAAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTTTCCCTTAGGGTTGCCCCTAGCTATGGAGGACTAAACAAAT  500

seq1  CTGCTTGATTTCTAAGCCCAAGTCACCTCATCTACAAGAAAGATGAGTAT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGATTTCTAAGCCCAAGTCACCTCATCTACAAGAAAGATGAGTAT  550

seq1  CTGCACTTCATCTTGTTGCACATGGTGCAGCTTGAACAAGAATACAGACA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTCATCTTGTTGCACATGGTGCAGCTTGAACAAGAATACAGACA  600

seq1  GGGCTGGAGAGTTAGATTAGTGGTGGAAGGTGTGTATAAGGTATGCTTGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGTTAGATTAGTGGTGGAAGGTGTGTATAAGGTATGCTTGA  650

seq1  TGCCCTGGTTTCAATGTCCATACCACAAAAATGAACAATAGAAATTAACA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGTTTCAATGTCCATACCACAAAAATGAACAATAGAAATTAACA  700

seq1  TAAATGTATCAAAACTCTTTGCAATAAATGAAAAGTTGTTATGGGAGAGA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATCAAAACTCTTTGCAATAAATGAAAAGTTGTTATGGGAGAGA  750

seq1  GTGAATATAATGAATAGATCAATAATTAATGGTCAAAACACTGAGTTCAT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATAATGAATAGATCAATAATTAATGGTCAAAACACTGAGTTCAT  800

seq1  ACATTTTCCCATAATGTTGAGGGAGGTTAGGCAGTAGGATATGGCATCAC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCCATAATGTTGAGGGAGGTTAGGCAGTAGGATATGGCATCAC  850

seq1  ATCTATAACTGAGCACAGTAACCTCTGAAGTATATTTGAACCCCTTTAGA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAACTGAGCACAGTAACCTCTGAAGTATATTTGAACCCCTTTAGA  900

seq1  TTGATCCCCACACTGACATAATATCCTATTATCCCTATTATTCTAGGATG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCCACACTGACATAATATCCTATTATCCCTATTATTCTAGGATG  950

seq1  TGCGTGAATGTTTTGCCTGGATGTGTTATCTGTGTGTCACATGGGTGTGT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAATGTTTTGCCTGGATGTGTTATCTGTGTGTCACATGGGTGTGT  1000

seq1  ATGCTACCCATGGAGAACAGAAGAGAGCATTGGATTCCCTAGAACTGGAG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCCATGGAGAACAGAAGAGAGCATTGGATTCCCTAGAACTGGAG  1050

seq1  TTATACATGGCTGTAAGCTACCATGTGTGTTCAGGAATTC  1068
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATGGCTGTAAGCTACCATGTGTGTTCAGGAATTC  1090


seq1: chr6_110823593_110824642
seq2: B6Ng01-176P17.g_65_1114

seq1  GAATTCCACCCTAGGACCCTCATGTAGGAGAAAACTGACTCCTACTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCTAGGACCCTCATGTAGGAGAAAACTGACTCCTACTAGTT  50

seq1  GTCCTTTGACATCACACACACATTCATGTACAGAATAAAAACACAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGACATCACACACACATTCATGTACAGAATAAAAACACAGTAAT  100

seq1  TTTGAATTGCTAAGAAGGAAGTTAGTATTCATTTAATAAATCTCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGCTAAGAAGGAAGTTAGTATTCATTTAATAAATCTCAATGAA  150

seq1  GAGAGAGCTAACATGTTTATATTCCATATAAACCTCTGACAAGCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCTAACATGTTTATATTCCATATAAACCTCTGACAAGCTGGGCA  200

seq1  GTGGTGGTGCCCACCTTTAAATCCAGCACTTGGAAGGCAGATGCAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCCCACCTTTAAATCCAGCACTTGGAAGGCAGATGCAGGCAG  250

seq1  ATTTCTGAGTTCGAGGCTAGCCTGGTCTACTGAGTGAGTTCCAGGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGGCTAGCCTGGTCTACTGAGTGAGTTCCAGGACAGC  300

seq1  CAGAGCTACACAGAGAAACCCTGTCTTGAAAAAATAAAAATAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACACAGAGAAACCCTGTCTTGAAAAAATAAAAATAAAATAAAA  350

seq1  TAAACCTCTGACAAATGGAAACTGAATAGATTTTTTTTTTTCACCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCTGACAAATGGAAACTGAATAGATTTTTTTTTTTCACCCAGGA  400

seq1  ACAAATTGTTTGTGTTCTGTGAGAATTCATGTTTTGGGATACTCTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGTTTGTGTTCTGTGAGAATTCATGTTTTGGGATACTCTCTTCA  450

seq1  ACATGACATCTGATAACTGGAATAAAGGATAAGAAAGGGGACAATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATCTGATAACTGGAATAAAGGATAAGAAAGGGGACAATATTTG  500

seq1  TTTTAACTTTTCTATGGAATATTAGTGAGTGACAGAAAGGTGGGGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTTTCTATGGAATATTAGTGAGTGACAGAAAGGTGGGGAGAGA  550

seq1  GCACAGCAACTTGAGTATTTACTGAAAAGGAAACAAGAGCCTGTATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAACTTGAGTATTTACTGAAAAGGAAACAAGAGCCTGTATGGGT  600

seq1  CAGCCACTCTCCAGTTAGCATCCATGAGAGTGAGCCGGAGTCATACTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCTCCAGTTAGCATCCATGAGAGTGAGCCGGAGTCATACTCGA  650

seq1  CTGACTCTTTGATAAGTAGAAATGGTATTTGGGTTGTGATTGGAACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTGATAAGTAGAAATGGTATTTGGGTTGTGATTGGAACCAGG  700

seq1  TAGACTTTAACAGGAACTGTTGCTTCAGTGTGTTCCCCATGCCCTGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTAACAGGAACTGTTGCTTCAGTGTGTTCCCCATGCCCTGGAGT  750

seq1  CTTCCATATCCTATATTTTAGAGCCAAAACTACATGTTTAAGAATTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATATCCTATATTTTAGAGCCAAAACTACATGTTTAAGAATTCTAC  800

seq1  TAGAAACTGACTGACTCCCAAGGGGATGTATTTGGGTGGCTGTAGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTGACTGACTCCCAAGGGGATGTATTTGGGTGGCTGTAGACAAT  850

seq1  ATT-GGAGTCTGAGAATATGTACAGAAAGGATTTTCATAAATTATAAACG  899
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTGGGAGTCTGAGAATATGTACAGAAAGGATTTTCAT-AATTATAAACG  899

seq1  TTAGTCATTTTGTATTTGACTCTAATGAAGTGCATCTTGAATTATTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGTCATTTTGTATTTGACTCTAATGAAGTGCATCTTGAA-TATTTTTT  948

seq1  GTTGCTATAACAAAATTCCTGAGACT-AAATAGTATGTAAAAAAGAAGCT  998
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GTTGCTATTACAAAATTCCTGAGACTAAAATAGTATGTAAAAAAGAAGCT  998

seq1  TGTTTGTCTCTTGGGAAAT-GTATTCCATAAAGATGGCATGAGTTTGCAT  1047
      || |||||||||||| ||| ||||||||||||||||||||||||| ||||
seq2  TG-TTGTCTCTTGGGGAATGGTATTCCATAAAGATGGCATGAGTTGGCAT  1047

seq1  ATA  1050
      |||
seq2  ATA  1050


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