BAC Information

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BAC

Clone NameB6Ng01-178H18
Chromosome6 (Build37)
Map Location 101,703,982 - 101,752,946
singlet/doubletdoublet
Overlap genenone
Upstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H18.bB6Ng01-178H18.g
ACCGA005458GA005459
length1,029781
definitionB6Ng01-178H18.b B6Ng01-178H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,752,141 - 101,752,946)(101,703,982 - 101,704,758)
sequence
gaattcacgcctagtcactgtccatctcggggcatagtaatggggtgatg
ggcgagcaacgaatcaggagctgtcacgctacatcaggtgctgaaacgtc
atgctgcggggtatataagcagcgccattttctgggtccagggtcttccc
tcctgataagtaagcaattaaagctttgccgcagaagattccggttgtcc
tgagtgtgttcttgccggcggggacaaaagctcgggatagaggtcaacat
ttgggatgtaaataaataaaataattaattaaaaaagagaactaaaatgt
agacaacatgatgtagactatcttcagtgttccatgtgattagaagtata
agcttggggaggtgtatcctgtctctgtatctagtgtggcttgaagccac
agcacagttttagtgtcgtaaaagcagagcggcttcactgttttccctga
agtagctcaaaacccatgtctcctgctacaaaactcactgttgtcactgg
tgggacagagttacagagactccttccaaggctgcgtacatctcagccaa
acacagattcaagtcacactgatgccaagaagtcaactgaagcagctgca
tttttttaatgacaaacagtgggatcattgggaaggcagcatgaactaca
ggctcagtgcctttatcaaataacactgatgtatgttacaaagtgcagtg
tgcagttacactcccacacatctgtgtgtggaaatttcactttcgatttt
ggtaatactcctggttgagtaagaatgaatttgttcctcccgacataagt
gcatcacatatatatgcaggagaagagcttgactggtttgattctgttta
tccagaacagagatctgtcttctggctcatgctttctttcttgtgttttg
ttttcagagtctaattacctatgtggagcaaagatgggatctgattgcaa
ttaaaagtttggacctcatgccaatccataacgatttttatttgtcaaat
aaaaatgttttatttgccagacttttaaa

gaattctcctgctgctttttggagttctgttccataagaagagaagaata
aagaggagccacgtgcttccacattgaaaataagatgcagccagacctgg
taggtggtggtgtaaacctgtcattacaattattcaggagactgacacca
taaaatcagaaattcacgacaggcttagtctatgaagtgtgatcaaggtt
ggactaattaatttagcaagagtttgtcataaaataaggaaaataaaagg
gactgggtgcttgttacatagcttaataggtgagtacttggtaacatgac
taatactctaggttcaatccccagtacttcaatcaatcagccaatcaatc
acttattcagcagaggttgtaactagcttagcagaagatagatgggttgc
ttgcatcctgactcaaccaactggagtgaattctatctcagaactattgg
gttaagaagactgtgaattcctttccagctcaaactaatctacttttact
tgcaaagtggatgctcacagtcagctattggatggatcacagggccccca
atggaggagctagagaaagtacccaaggagctaaaggggtctgctaaagg
tggaacaacattatgaactaaccagtacccccagagcgtgtgtctctagc
tgcatatgtatcagaagatggcctagtcggccatcattgttgaagagagg
cccattgggacgtgcaaactttatatgcctcagtacagggggaaccgcca
gggccaagaagtgggagtgggtgggcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101752141_101752946
seq2: B6Ng01-178H18.b_47_852 (reverse)

seq1  TGATGCACTTATGTCGGGAGGAACAAATTCATTCTTACTCAACCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACTTATGTCGGGAGGAACAAATTCATTCTTACTCAACCAGGAGT  50

seq1  ATTACCAAAATCGAAAGTGAAATTTCCACACACAGATGTGTGGGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAAAATCGAAAGTGAAATTTCCACACACAGATGTGTGGGAGTGTA  100

seq1  ACTGCACACTGCACTTTGTAACATACATCAGTGTTATTTGATAAAGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACACTGCACTTTGTAACATACATCAGTGTTATTTGATAAAGGCAC  150

seq1  TGAGCCTGTAGTTCATGCTGCCTTCCCAATGATCCCACTGTTTGTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTAGTTCATGCTGCCTTCCCAATGATCCCACTGTTTGTCATTA  200

seq1  AAAAAATGCAGCTGCTTCAGTTGACTTCTTGGCATCAGTGTGACTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCAGCTGCTTCAGTTGACTTCTTGGCATCAGTGTGACTTGAAT  250

seq1  CTGTGTTTGGCTGAGATGTACGCAGCCTTGGAAGGAGTCTCTGTAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGGCTGAGATGTACGCAGCCTTGGAAGGAGTCTCTGTAACTCT  300

seq1  GTCCCACCAGTGACAACAGTGAGTTTTGTAGCAGGAGACATGGGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAGTGACAACAGTGAGTTTTGTAGCAGGAGACATGGGTTTTGA  350

seq1  GCTACTTCAGGGAAAACAGTGAAGCCGCTCTGCTTTTACGACACTAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCAGGGAAAACAGTGAAGCCGCTCTGCTTTTACGACACTAAAAC  400

seq1  TGTGCTGTGGCTTCAAGCCACACTAGATACAGAGACAGGATACACCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGGCTTCAAGCCACACTAGATACAGAGACAGGATACACCTCCC  450

seq1  CAAGCTTATACTTCTAATCACATGGAACACTGAAGATAGTCTACATCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATACTTCTAATCACATGGAACACTGAAGATAGTCTACATCATG  500

seq1  TTGTCTACATTTTAGTTCTCTTTTTTAATTAATTATTTTATTTATTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACATTTTAGTTCTCTTTTTTAATTAATTATTTTATTTATTTACA  550

seq1  TCCCAAATGTTGACCTCTATCCCGAGCTTTTGTCCCCGCCGGCAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGTTGACCTCTATCCCGAGCTTTTGTCCCCGCCGGCAAGAACA  600

seq1  CACTCAGGACAACCGGAATCTTCTGCGGCAAAGCTTTAATTGCTTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGACAACCGGAATCTTCTGCGGCAAAGCTTTAATTGCTTACTTA  650

seq1  TCAGGAGGGAAGACCCTGGACCCAGAAAATGGCGCTGCTTATATACCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGGAAGACCCTGGACCCAGAAAATGGCGCTGCTTATATACCCCG  700

seq1  CAGCATGACGTTTCAGCACCTGATGTAGCGTGACAGCTCCTGATTCGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGACGTTTCAGCACCTGATGTAGCGTGACAGCTCCTGATTCGTTG  750

seq1  CTCGCCCATCACCCCATTACTATGCCCCGAGATGGACAGTGACTAGGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCATCACCCCATTACTATGCCCCGAGATGGACAGTGACTAGGCGT  800

seq1  GAATTC  806
      ||||||
seq2  GAATTC  806


seq1: chr6_101703982_101704758
seq2: B6Ng01-178H18.g_71_851

seq1  GAATTCTCCTGCTGCTTTTTGGAGTTCTGTTCCATAAGAAGAGAAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCTGCTTTTTGGAGTTCTGTTCCATAAGAAGAGAAGAATA  50

seq1  AAGAGGAGCCACGTGCTTCCACATTGAAAATAAGATGCAGCCAGACCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCCACGTGCTTCCACATTGAAAATAAGATGCAGCCAGACCTGG  100

seq1  TAGGTGGTGGTGTAAACCTGTCATTACAATTATTCAGGAGACTGACACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTGGTGTAAACCTGTCATTACAATTATTCAGGAGACTGACACCA  150

seq1  TAAAATCAGAAATTCACGACAGGCTTAGTCTATGAAGTGTGATCAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGAAATTCACGACAGGCTTAGTCTATGAAGTGTGATCAAGGTT  200

seq1  GGACTAATTAATTTAGCAAGAGTTTGTCATAAAATAAGGAAAATAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATTAATTTAGCAAGAGTTTGTCATAAAATAAGGAAAATAAAAGG  250

seq1  GACTGGGTGCTTGTTACATAGCTTAATAGGTGAGTACTTGGTAACATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTGCTTGTTACATAGCTTAATAGGTGAGTACTTGGTAACATGAC  300

seq1  TAATACTCTAGGTTCAATCCCCAGTACTTCAATCAATCAGCCAATCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTCTAGGTTCAATCCCCAGTACTTCAATCAATCAGCCAATCAATC  350

seq1  ACTTATTCAGCAGAGGTTGTAACTAGCTTAGCAGAAGATAGATGGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCAGCAGAGGTTGTAACTAGCTTAGCAGAAGATAGATGGGTTGC  400

seq1  TTGCATCCTGACTCAACCAACTGGAGTGAATTCTATCTCAGAACTATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTGACTCAACCAACTGGAGTGAATTCTATCTCAGAACTATTGG  450

seq1  GTTAAGAAGACTGTGAATTCCTTTCCAGCTCAAACTAATCTACTTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAGACTGTGAATTCCTTTCCAGCTCAAACTAATCTACTTTTACT  500

seq1  TGCAAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCA  550

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCTAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCTAAAGG  600

seq1  TGGAACAACATTATGAACTAACCAGTACCCCCAGAGCGTGTGTCTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACATTATGAACTAACCAGTACCCCCAGAGCGTGTGTCTCTAGC  650

seq1  TGCATATGTATCAGAAGATGGCCTAGTCGGCCATCATTG-GGAAGAGAGG  699
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TGCATATGTATCAGAAGATGGCCTAGTCGGCCATCATTGTTGAAGAGAGG  700

seq1  CCCATT-GGACGTGCAAACTTTATATGCCTCAGTACAGGGG--AACGCCA  746
      |||||| ||||||||||||||||||||||||||||||||||  | |||||
seq2  CCCATTGGGACGTGCAAACTTTATATGCCTCAGTACAGGGGGAACCGCCA  750

seq1  GGGCCAAGAAGTGGGAGTGGGTGGGCAGGGG  777
      |||||||||||||||||||||||||||||||
seq2  GGGCCAAGAAGTGGGAGTGGGTGGGCAGGGG  781


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