BAC Information

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BAC

Clone NameB6Ng01-179A03
Chromosome6 (Build37)
Map Location 103,599,383 - 103,600,507
singlet/doubletsinglet
Overlap geneChl1
Upstream geneLOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179A03.bB6Ng01-179A03.g
ACCGA005844GA005845
length7761,117
definitionB6Ng01-179A03.b B6Ng01-179A03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaggggtcgaggggaagcaagcaatttgagtgcccacattcat
ctctgtttcctggctatgtttgcgacatgaccagccaatttatgcttttg
ccaacaagccttcttgctgtggtggactgtaaaatcacttaaaccacgag
gcaaaatatgtccttatgttgttaaggtgccttctgccagatatttaatg
acagaagtgacaaaggtaactagtataagaatcttgctcaatttaacagt
gttgattcttcagatccatgaacatagggttgtttttttttttaatttat
ttatttttctgtcttctctataattctagcagcaattgaggtttttatta
ttgatgtttcccttccttggttatatgtattgctaagatatgttttagct
gttatgagggattgttggttttttctttcacaaagtccattactgtcacg
taaatgtgatattctacaacactgatctttgtaggctgaagctttactaa
gatcagttctcacacctttttaatagaatgttgaggtttttctatatggg
caatcatattctctaaaaacatgggtaatttaactccttttcactttcgc
aaatccttacctcttgctcttgctcttgttaatactttcaattgtataaa
aagttctaaaagttttggtccttgccacagtcctggtcttataagaaaca
cttaccagtccaatgtgatattagctatactatctttcccatgttatttt
attgtgtgtgtatgtatgtatatgtg

gaattctttacatttctaagattctcccattagaaatcgtccgatggagg
ctgactgatatttttcaatataagattttaccatataaaactttgggtta
gagctgtgtggaattagaaaccgtaggtcatgtcaaacaaatgagtagat
gtttcaggcacagaggtaaactatgtcagtgtttccatagctttaagtgc
aaagggtgtgtagtctgtcatgacttctacttattgtcttcattgccagt
ggctggatttcctctcctatggagaaatgactgtgtaactggcattatct
agctagcctatcttcatgtgacagtaggtgaagaaattgcctagataatt
tgcctcaaagcacttaaaagcctataaacaactatgtatgcttatttctt
atggtctttgattgaagtgccatatgttatcatcctggatccacaagaaa
gacacatgaaaatatagataccgaagagctaggagagctgaactaaactg
cattatcaaagagtgtctttgtgttgatgtagaggctttgagatcatgtg
ctactgaaactgagctaggtttcactaatcatagatttaaccatcatcat
atatgaaaactaattactttccccaggttacatagatggttagtgaagct
gacagagtggttatgctactttctcctaaaatctaaactgtaaatatcaa
gactctgatgaaaatttttctaataattaaatacacactaattaaattca
tactaatatctttctttagttgctattatgtccatttaacacttcactag
agcaactgtcgattcaatctgtgcctggacacttacctgggtactatgaa
ctctatttcttctgatactgcagttcctagtctattggatgcgaaacagc
ggtatttttccttgaaagtgagagatgtgggccctcatttgggatcttga
atgtgcctgaatttgttagcccgcaattatccgaggatcagaaagatcaa
aggcttatcgtccttagtccatgaaatctagatgataagtaatccacccc
aggtattagtgactttgttatttttaaagttaataccaaatgccaaatga
taaaaccagaaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103599383_103600507
seq2: B6Ng01-179A03.g_63_1179 (reverse)

seq1  ATACATTTTCTTGGTTTTATCATTTGGGCATTTGGTTATTAAACTTTTTA  50
      ||||||||   |||||||||||||| ||||||||| ||||||    ||||
seq2  ATACATTT--CTGGTTTTATCATTT-GGCATTTGG-TATTAA---CTTTA  43

seq1  AAAATAACAAATGTCACTAATACTTGGGGTGGATTTTACTTTATCATCTA  100
      ||||||||||| ||||||||||| |||||||||  |||| ||||||||||
seq2  AAAATAACAAA-GTCACTAATACCTGGGGTGGA--TTAC-TTATCATCTA  89

seq1  GATTTTCATGGACTAAGGACGATAAGCCTTTTGATCTTTCTGATCCTCGG  150
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GA-TTTCATGGACTAAGGACGATAAGCC-TTTGATCTTTCTGATCCTCGG  137

seq1  ATAATTGC-GGCTAAC-AATTCAGGCACATTCAAGATCCCAAATGAGGG-  197
      |||||||| ||||||| |||||||||||||||||||||||||||||||| 
seq2  ATAATTGCGGGCTAACAAATTCAGGCACATTCAAGATCCCAAATGAGGGC  187

seq1  CCACATCTCTCACTTTCAAGG-AAAATACCGCTGTTTCGCATCCAATAGA  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCACATCTCTCACTTTCAAGGAAAAATACCGCTGTTTCGCATCCAATAGA  237

seq1  CTAGGAACTGCAGTATCAGAAGAAATAGAGTTCATAGTA-CCAGGTAAGT  295
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAGGAACTGCAGTATCAGAAGAAATAGAGTTCATAGTACCCAGGTAAGT  287

seq1  GTCCAGGCACAGATTGAATCGACAGTTGCTCTAGTGAAGTGTTAAATGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCACAGATTGAATCGACAGTTGCTCTAGTGAAGTGTTAAATGGA  337

seq1  CATAATAGCAACTAAAGAAAGATATTAGTATGAATTTAATTAGTGTGTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGCAACTAAAGAAAGATATTAGTATGAATTTAATTAGTGTGTAT  387

seq1  TTAATTATTAGAAAAATTTTCATCAGAGTCTTGATATTTACAGTTTAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTAGAAAAATTTTCATCAGAGTCTTGATATTTACAGTTTAGAT  437

seq1  TTTAGGAGAAAGTAGCATAACCACTCTGTCAGCTTCACTAACCATCTATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGAAAGTAGCATAACCACTCTGTCAGCTTCACTAACCATCTATG  487

seq1  TAACCTGGGGAAAGTAATTAGTTTTCATATATGATGATGGTTAAATCTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGGGAAAGTAATTAGTTTTCATATATGATGATGGTTAAATCTAT  537

seq1  GATTAGTGAAACCTAGCTCAGTTTCAGTAGCACATGATCTCAAAGCCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGAAACCTAGCTCAGTTTCAGTAGCACATGATCTCAAAGCCTCT  587

seq1  ACATCAACACAAAGACACTCTTTGATAATGCAGTTTAGTTCAGCTCTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACACAAAGACACTCTTTGATAATGCAGTTTAGTTCAGCTCTCCT  637

seq1  AGCTCTTCGGTATCTATATTTTCATGTGTCTTTCTTGTGGATCCAGGATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCGGTATCTATATTTTCATGTGTCTTTCTTGTGGATCCAGGATG  687

seq1  ATAACATATGGCACTTCAATCAAAGACCATAAGAAATAAGCATACATAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATATGGCACTTCAATCAAAGACCATAAGAAATAAGCATACATAGT  737

seq1  TGTTTATAGGCTTTTAAGTGCTTTGAGGCAAATTATCTAGGCAATTTCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGGCTTTTAAGTGCTTTGAGGCAAATTATCTAGGCAATTTCTT  787

seq1  CACCTACTGTCACATGAAGATAGGCTAGCTAGATAATGCCAGTTACACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTGTCACATGAAGATAGGCTAGCTAGATAATGCCAGTTACACAG  837

seq1  TCATTTCTCCATAGGAGAGGAAATCCAGCCACTGGCAATGAAGACAATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCCATAGGAGAGGAAATCCAGCCACTGGCAATGAAGACAATAA  887

seq1  GTAGAAGTCATGACAGACTACACACCCTTTGCACTTAAAGCTATGGAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTCATGACAGACTACACACCCTTTGCACTTAAAGCTATGGAAAC  937

seq1  ACTGACATAGTTTACCTCTGTGCCTGAAACATCTACTCATTTGTTTGACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATAGTTTACCTCTGTGCCTGAAACATCTACTCATTTGTTTGACA  987

seq1  TGACCTACGGTTTCTAATTCCACACAGCTCTAACCCAAAGTTTTATATGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACGGTTTCTAATTCCACACAGCTCTAACCCAAAGTTTTATATGG  1037

seq1  TAAAATCTTATATTGAAAAATATCAGTCAGCCTCCATCGGACGATTTCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTATATTGAAAAATATCAGTCAGCCTCCATCGGACGATTTCTA  1087

seq1  ATGGGAGAATCTTAGAAATGTAAAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  ATGGGAGAATCTTAGAAATGTAAAGAATTC  1117


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