BAC Information

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BAC

Clone NameB6Ng01-179A08
Chromosome6 (Build37)
Map Location 88,133,786 - 88,279,359
singlet/doubletdoublet
Overlap geneGata2, Dnajb8, Eefsec
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneRuvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179A08.bB6Ng01-179A08.g
ACCGA005854GA005855
length1,147975
definitionB6Ng01-179A08.b B6Ng01-179A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,133,786 - 88,134,894)(88,278,391 - 88,279,359)
sequence
gaattcataacaatcctcctgcctctgcctctgcctctgcctcctaagtt
ctgggttaaaggtatgtgcaccatggcctacagtcttctagatctttatt
gcctctgtgtgttgacactaaaggtcctttacatctttgtaatatagcct
gcatcaatgcctgagccacagagatggttcagtcatcaatgagttgcata
ggtgtagctcaattgataggtgtttgcctaccttgcacaaagctctgtgt
ttaaaccctgacattttataaaaccaggtgcctatcttagtgaaccacca
agttcattggagtactctataggatcagcggtgactcggaggccgctgaa
tcacagaaaagcccagcccataaaaaaacccccccgcccccccacacaca
cacacaaacacacacatgaataacagaattattaaaactgcacacaggag
ctccccacatagactgcaggctgtgtcgacagtctcttcccagtaatcac
taactgctttataaatctggagagggtccttgtgagtcctgtaactttct
gagctcccagagtcttataagttgcctaggtcttaagtttccctccaaaa
aggagtgcttgcatttgctggaaatagctacaagttggcttttcccttct
aacttcctctctgacctctgtgccagtcagagaaagttctctgttccgtg
agctcaccatacccacataagccgaggtcatctgcttggtcctaggtgag
gcatagggaagaggttggtcattggagatatgtttgtgtcctcgagggaa
ttgtgggccagtatcttccctttgtcttttttagcactggggtctttagg
tgaggtctttgcctttctcactttacccacagagcagcagagtgaaactg
aacaagccctgaaactcttctgacttcctttttaaattaccaccttgtct
ctgggcattttgtaactgaagggctgacttgataccagccaaggtttccc
gctctgggttcaccaaggctgtggcttcctcccttgagtgactgaataca
gcctatgttttccttgcttcttgtgtcaccaggccttggccttccctcct
gagtgacttgaatacagccaggttcccagctctgggtcacaaggctg
gaattcttgacccttctccagccagccatccttctgccatgggaagtgtg
tggtgggaagaggaagaggaagacaataagagttttctcactgttcctca
gccccatcagagccttacacctagtggagcacatgccattgccatggtcc
aagtattactccatcaatccagaggagctagaaggagggtaggagagata
atgtttgcctaggtacctggagacagactagcctggctgtttctgtggag
aaggagattaggaagcaagagttcatcctctgctagaagactagttgtcc
tcactagatggaccaactttggaagtgcccaaaagctaagaaacacagtc
catgtaggatctcagaatacactcatcaggatcagataccctgcctctga
tggggaaaggtgaagtgcaggctaggtaaagaaggcaacctgagctgatc
tgaccctctgaagccagcatagtccaactttgcctggcatctttggcctc
tcctgttgttctacccagagtctagtgctgcagacttcatgatgggccca
ttttcctctgtagtctggatttctccactctttccctagcagagcaagct
gcaagtgttttctgggtgaggcaagccttgaaactatccacaggccttcc
aggctacactgtgtgtgccttagagaggcagcccaggggttatctcgttg
atctttctatcccctccactctaaacacacacactcattcctgtccatct
ccccaagaatctaatgacaactgcctgacttcagggtacccactgatttg
ttgtgttagaccacatttgtagtggcttccaggcaatatgtgcacaagct
atgcattgtagcacaagcttctaatgttgatataaaccagaaaatctttt
taggactttgcccaaattgctgatattttgcagatttactcttccagttt
tttcccatgcaatcggaaaaacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88133786_88134894
seq2: B6Ng01-179A08.b_38_1184

seq1  GAATTCATAACAATCCTCCTGCCTCTGCCTCTGCCTCTGCCTCCTAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACAATCCTCCTGCCTCTGCCTCTGCCTCTGCCTCCTAAGTT  50

seq1  CTGGGTTAAAGGTATGTGCACCATGGCCTACAGTCTTCTAGATCTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTAAAGGTATGTGCACCATGGCCTACAGTCTTCTAGATCTTTATT  100

seq1  GCCTCTGTGTGTTGACACTAAAGGTCCTTTACATCTTTGTAATATAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTGTGTTGACACTAAAGGTCCTTTACATCTTTGTAATATAGCCT  150

seq1  GCATCAATGCCTGAGCCACAGAGATGGTTCAGTCATCAATGAGTTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATGCCTGAGCCACAGAGATGGTTCAGTCATCAATGAGTTGCATA  200

seq1  GGTGTAGCTCAATTGATAGGTGTTTGCCTACCTTGCACAAAGCTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCTCAATTGATAGGTGTTTGCCTACCTTGCACAAAGCTCTGTGT  250

seq1  TTAAACCCTGACATTTTATAAAACCAGGTGCCTATCTTAGTGAACCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCTGACATTTTATAAAACCAGGTGCCTATCTTAGTGAACCACCA  300

seq1  AGTTCATTGGAGTACTCTATAGGATCAGCGGTGACTCGGAGGCCGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTGGAGTACTCTATAGGATCAGCGGTGACTCGGAGGCCGCTGAA  350

seq1  TCACAGAAAAGCCCAGCCCATAAAAAAACCCCCCCGCCCCCCCACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAAGCCCAGCCCATAAAAAAACCCCCCCGCCCCCCCACACACA  400

seq1  CACACAAACACACACATGAATAACAGAATTATTAAAACTGCACACAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACACACATGAATAACAGAATTATTAAAACTGCACACAGGAG  450

seq1  CTCCCCACATAGACTGCAGGCTGTGTCGACAGTCTCTTCCCAGTAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACATAGACTGCAGGCTGTGTCGACAGTCTCTTCCCAGTAATCAC  500

seq1  TAACTGCTTTATAAATCTGGAGAGGGTCCTTGTGAGTCCTGTAACTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTTTATAAATCTGGAGAGGGTCCTTGTGAGTCCTGTAACTTTCT  550

seq1  GAGCTCCCAGAGTCTTATAAGTTGCCTAGGTCTTAAGTTTCCCTCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCAGAGTCTTATAAGTTGCCTAGGTCTTAAGTTTCCCTCCAAAA  600

seq1  AGGAGTGCTTGCATTTGCTGGAAATAGCTACAAGTTGGCTTTTCCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCTTGCATTTGCTGGAAATAGCTACAAGTTGGCTTTTCCCTTCT  650

seq1  AACTTCCTCTCTGACCTCTGTGCCAGTCAGAGAAAGTTCTCTGTTCCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTCTCTGACCTCTGTGCCAGTCAGAGAAAGTTCTCTGTTCCGTG  700

seq1  AGCTCACCATACCCACATAAGCCGAGGTCATCTGCTTGGTCCTAGGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATACCCACATAAGCCGAGGTCATCTGCTTGGTCCTAGGTGAG  750

seq1  GCATAGGGAAGAGGTTGGTCATTGGAGATATGTTTGTGTCCTCGAAGGGA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCATAGGGAAGAGGTTGGTCATTGGAGATATGTTTGTGTCCTCG-AGGGA  799

seq1  ATTGTGGGCCAGTATCTTCCCTTTGTC-TTTTTAGCACT-GGGTCTTTAG  848
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  ATTGTGGGCCAGTATCTTCCCTTTGTCTTTTTTAGCACTGGGGTCTTTAG  849

seq1  GTGAGGTCTTTGCC-TTCTCACTTTA-CCACAGAGCAGCAGAGTG-AACT  895
      |||||||||||||| ||||||||||| |||||||||||||||||| ||||
seq2  GTGAGGTCTTTGCCTTTCTCACTTTACCCACAGAGCAGCAGAGTGAAACT  899

seq1  GACCAAGCCCTG-AACTCTTCTGACTT-CTTTTTAAAT--ACACC-TGTC  940
      || ||||||||| |||||||||||||| ||||||||||   |||| ||||
seq2  GAACAAGCCCTGAAACTCTTCTGACTTCCTTTTTAAATTACCACCTTGTC  949

seq1  TCT-GGCA-TTTGTAACTGAA-GGCTGAC-TGATA-CAGCCA--GGTTCC  983
      ||| |||| |||||||||||| ||||||| ||||| ||||||  | ||||
seq2  TCTGGGCATTTTGTAACTGAAGGGCTGACTTGATACCAGCCAAGGTTTCC  999

seq1  CGCTCTGG--TCAC--AGGCTGT-GCTTCCTCC--TGAGTGACTG-ATAC  1025
      ||||||||  ||||  ||||||| |||||||||  |||||||||| ||||
seq2  CGCTCTGGGTTCACCAAGGCTGTGGCTTCCTCCCTTGAGTGACTGAATAC  1049

seq1  AGCC-AGG--TTCCTGGC-TCT--GGTCA-CAGGC--TGTGCTT-CCTCC  1065
      |||| | |  ||||| || |||   |||| |||||  ||  ||| |||||
seq2  AGCCTATGTTTTCCTTGCTTCTTGTGTCACCAGGCCTTGGCCTTCCCTCC  1099

seq1  TGAGTGACT--GATACAGCCAGGTTCCCAGCTCT-GGTCAC-AGGCTG  1109
      |||||||||   |||||||||||||||||||||| |||||| ||||||
seq2  TGAGTGACTTGAATACAGCCAGGTTCCCAGCTCTGGGTCACAAGGCTG  1147

seq1: chr6_88278391_88279359
seq2: B6Ng01-179A08.g_62_1036 (reverse)

seq1  TCTGTTTTTAC-ATTGCATAGGAAAAAACTGGAAGAGTAAATCTGCAAAA  49
      ||||||||| | ||||||| ||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCCGATTGCATGGGAAAAAACTGGAAGAGTAAATCTGCAAAA  50

seq1  TATCAGCAATTTTGGGCAAGGTCCTAAAAAGCTTTTCTGGTTTATATC-A  98
      ||||||||| ||||||||| ||||||||||| |||||||||||||||| |
seq2  TATCAGCAA-TTTGGGCAAAGTCCTAAAAAGATTTTCTGGTTTATATCAA  99

seq1  CATTAGGAGCTTGTGCTAC-ATGCATAGCTTGTGCACATATTGCCT-GAA  146
      |||||| |||||||||||| |||||||||||||||||||||||||| |||
seq2  CATTAGAAGCTTGTGCTACAATGCATAGCTTGTGCACATATTGCCTGGAA  149

seq1  GCCACTACAAATGTGGTCTAACACAAC-AATCAGTGGGTACCCTGAAGTC  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCCACTACAAATGTGGTCTAACACAACAAATCAGTGGGTACCCTGAAGTC  199

seq1  AGGCAGTTGTCATTAGATTCTT-GGGAGATGGACAGGAATGAGTGTGTGT  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCAGTTGTCATTAGATTCTTGGGGAGATGGACAGGAATGAGTGTGTGT  249

seq1  GTTTAGAGTGGA-GGGATAGAAAGATCAACGAGATAACCCCTGGGCTGCC  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGTGGAGGGGATAGAAAGATCAACGAGATAACCCCTGGGCTGCC  299

seq1  TCTCTAAGGCACACACAGTGTAGCCTGGAAGGCCTGTGGATAGTTTCAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGCACACACAGTGTAGCCTGGAAGGCCTGTGGATAGTTTCAAG  349

seq1  GCTTGCCTCACCCAGAAAACACTTGCAGCTTGCTCTGCTAGGGAAAGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTCACCCAGAAAACACTTGCAGCTTGCTCTGCTAGGGAAAGAGT  399

seq1  GGAGAAATCCAGACTACAGAGGAAAATGGGCCCATCATGAAGTCTGCAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATCCAGACTACAGAGGAAAATGGGCCCATCATGAAGTCTGCAGC  449

seq1  ACTAGACTCTGGGTAGAACAACAGGAGAGGCCAAAGATGCCAGGCAAAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTCTGGGTAGAACAACAGGAGAGGCCAAAGATGCCAGGCAAAGT  499

seq1  TGGACTATGCTGGCTTCAGAGGGTCAGATCAGCTCAGGTTGCCTTCTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTATGCTGGCTTCAGAGGGTCAGATCAGCTCAGGTTGCCTTCTTTA  549

seq1  CCTAGCCTGCACTTCACCTTTCCCCATCAGAGGCAGGGTATCTGATCCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCTGCACTTCACCTTTCCCCATCAGAGGCAGGGTATCTGATCCTG  599

seq1  ATGAGTGTATTCTGAGATCCTACATGGACTGTGTTTCTTAGCTTTTGGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTATTCTGAGATCCTACATGGACTGTGTTTCTTAGCTTTTGGGC  649

seq1  ACTTCCAAAGTTGGTCCATCTAGTGAGGACAACTAGTCTTCTAGCAGAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAAGTTGGTCCATCTAGTGAGGACAACTAGTCTTCTAGCAGAGG  699

seq1  ATGAACTCTTGCTTCCTAATCTCCTTCTCCACAGAAACAGCCAGGCTAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTTGCTTCCTAATCTCCTTCTCCACAGAAACAGCCAGGCTAGT  749

seq1  CTGTCTCCAGGTACCTAGGCAAACATTATCTCTCCTACCCTCCTTCTAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAGGTACCTAGGCAAACATTATCTCTCCTACCCTCCTTCTAGC  799

seq1  TCCTCTGGATTGATGGAGTAATACTTGGACCATGGCAATGGCATGTGCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGATTGATGGAGTAATACTTGGACCATGGCAATGGCATGTGCTC  849

seq1  CACTAGGTGTAAGGCTCTGATGGGGCTGAGGAACAGTGAGAAAACTCTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTGTAAGGCTCTGATGGGGCTGAGGAACAGTGAGAAAACTCTTA  899

seq1  TTGTCTTCCTCTTCCTCTTCCCACCACACACTTCCCATGGCAGAAGGATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCTCTTCCTCTTCCCACCACACACTTCCCATGGCAGAAGGATG  949

seq1  GCTGGCTGGAGAAGGGTCAAGAATTC  969
      ||||||||||||||||||||||||||
seq2  GCTGGCTGGAGAAGGGTCAAGAATTC  975