BAC Information

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BAC

Clone NameB6Ng01-180E13
Chromosome6 (Build37)
Map Location 143,780,625 - 143,781,810
singlet/doubletsinglet
Overlap geneSox5
Upstream geneSt8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E13.b
ACCGA006765
length1,183
definitionB6Ng01-180E13.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattcccacatggagggtgttgctcacaatggcctgacattatt
ccccaataggaatgtatctaatgtaccatgattacacacatacatacaca
cacacacacacacacacacacacagaaatccaagatcagaaaatattttt
ttctctaaatttctgtctctctctcttttcacctgagaacggcacctaca
gtttccattaaaaagaaaaagaaaagaaaaaaagtagaaaaccaaaaaca
aacaaaacaaaacaaaacgaaaagcagtctcaccagttgctggtgtgtca
gctcttttcagggactgtctaaaggtttaacactgtcctaacggaagaag
ggacgagaagaaaggaggggacaagcaaatgaagatggtgatcgcttcgg
gacgaatttggcacttgctcaaagatatggtgtctcgtgcaagggttagg
ggtctctaaggaaaacggttgttgactctgttgtgtagaagcaatgaagg
caaacacaggctcttgttttcctctctgcccccagcccctcgcacatgcc
tccatctttaaagcagagagatagagggtggagggaactgaccgcagtct
tccccctgtctgtcaggtgcaagataacaaccaaaaggaaaagaaaagag
gagcaaacccagaaccacccttcctccccactccccccgcccccaaacag
aacagaacagaacaaaactttatttctttttaaaaattgtagcacagaac
aacataacacattcacaagccacttgttggcactgtgtacctgagtgagg
atttctaatatagaacaaacagccataaagtttattaaaaaaaaaaaaag
ttgacgggtgagacttcagtgctggggtgtagcagctgagttactggcac
tgtttaacccatagcttatttcgatctcttcttcttggtgacgtttttgc
ttggtattttttttctttctttctttcttcttttccttccgagccttttg
aggctgaggtctatttgttcagctgatgtcccacctattatagactacag
ttaaatatacgtcagttgtatgagagagttatgtgccttgccactggaag
tatgatccggacaaggctttcttcaagtctcggctcacaccagttctgtt
ggccctatcgattgtcttgtcccgcatgtggtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143780625_143781810
seq2: B6Ng01-180E13.b_47_1229

seq1  GAATTCTATTCCCACATGGAGGGTGTTGCTCACAATGGCCTGACATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCCCACATGGAGGGTGTTGCTCACAATGGCCTGACATTATT  50

seq1  CCCCAATAGGAATGTATCTAATGTACCATGATTACACACATACATACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAGGAATGTATCTAATGTACCATGATTACACACATACATACACA  100

seq1  CACACACACACACACACACACACAGAAATCCAAGATCAGAAAATATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAGAAATCCAAGATCAGAAAATATTTTT  150

seq1  TTCTCTAAATTTCTGTCTCTCTCTCTTTTCACCTGAGAACGGCACCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAATTTCTGTCTCTCTCTCTTTTCACCTGAGAACGGCACCTACA  200

seq1  GTTTCCATTAAAAAGAAAAAGAAAAGAAAAAAAGTAGAAAACCAAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATTAAAAAGAAAAAGAAAAGAAAAAAAGTAGAAAACCAAAAACA  250

seq1  AACAAAACAAAACAAAACGAAAAGCAGTCTCACCAGTTGCTGGTGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACGAAAAGCAGTCTCACCAGTTGCTGGTGTGTCA  300

seq1  GCTCTTTTCAGGGACTGTCTAAAGGTTTAACACTGTCCTAACGGAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTCAGGGACTGTCTAAAGGTTTAACACTGTCCTAACGGAAGAAG  350

seq1  GGACGAGAAGAAAGGAGGGGACAAGCAAATGAAGATGGTGATCGCTTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGAAGAAAGGAGGGGACAAGCAAATGAAGATGGTGATCGCTTCGG  400

seq1  GACGAATTTGGCACTTGCTCAAAGATATGGTGTCTCGTGCAAGGGTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAATTTGGCACTTGCTCAAAGATATGGTGTCTCGTGCAAGGGTTAGG  450

seq1  GGTCTCTAAGGAAAACGGTTGTTGACTCTGTTGTGTAGAAGCAATGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTAAGGAAAACGGTTGTTGACTCTGTTGTGTAGAAGCAATGAAGG  500

seq1  CAAACACAGGCTCTTGTTTTCCTCTCTGCCCCCAGCCCCTCGCACATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGGCTCTTGTTTTCCTCTCTGCCCCCAGCCCCTCGCACATGCC  550

seq1  TCCATCTTTAAAGCAGAGAGATAGAGGGTGGAGGGAACTGACCGCAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTAAAGCAGAGAGATAGAGGGTGGAGGGAACTGACCGCAGTCT  600

seq1  TCCCCCTGTCTGTCAGGTGCAAGATAACAACCAAAAGGAAAAGAAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGTCTGTCAGGTGCAAGATAACAACCAAAAGGAAAAGAAAAGAG  650

seq1  GAGCAAACCCAGAACCACCCTTCCTCCCCACTCCCCCCGCCCCCAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACCCAGAACCACCCTTCCTCCCCACTCCCCCCGCCCCCAAACAG  700

seq1  AACAGAACAGAACAAAAC-TTATTTCTTTTTAAAAATTGTAGCACAGAAC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACAGAACAGAACAAAACTTTATTTCTTTTTAAAAATTGTAGCACAGAAC  750

seq1  AACATAACACATTCACAAGCCACTTGTTGGCACTGTGTACCTGAGTGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACACATTCACAAGCCACTTGTTGGCACTGTGTACCTGAGTGAGG  800

seq1  ATTTCTAATATAGAACAAACAGCCATAAAGTTTATTAAAAAAAAAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATATAGAACAAACAGCCATAAAGTTTATTAAAAAAAAAAAAAG  850

seq1  TTGACGGGTGAGACTTCAGTGCTGGGGTGTAGCAGCTGAGTTACTGGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGGGTGAGACTTCAGTGCTGGGGTGTAGCAGCTGAGTTACTGGCAC  900

seq1  TGTTTAACCCATAGCTTATTTCGATCTCTTCTTCTTGATGACGTTTTTGC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTAACCCATAGCTTATTTCGATCTCTTCTTCTTGGTGACGTTTTTGC  950

seq1  TTGTAATTTTTTTTCTTTCTTTCTTTCTTTCTTTTCTTTCCGAGCCTTTT  999
      |||  |||||||||||||||||||||| |||||||| |||||||||||||
seq2  TTGGTATTTTTTTTCTTTCTTTCTTTC-TTCTTTTCCTTCCGAGCCTTTT  999

seq1  GAGGCTGAGGTCTATTTG-TCAGCTGATGTCCCAACTATATAAGACTAAC  1048
      |||||||||||||||||| ||||||||||||||| ||||   ||||| ||
seq2  GAGGCTGAGGTCTATTTGTTCAGCTGATGTCCCACCTATTATAGACT-AC  1048

seq1  AGTTAAAATAACAGTCAG-TGTATGAGAGAGTTAATGTGCTTGGCCACTG  1097
      |||| |||||   ||||| |||||||||||||| |||||| | |||||| 
seq2  AGTT-AAATATACGTCAGTTGTATGAGAGAGTT-ATGTGCCTTGCCACT-  1095

seq1  GGAAGGATGAACCGGACAGGGC-TTCTTCAAGTCCTCGGCTCACCACAG-  1145
      ||||| |||| ||||||| ||| |||||||||| ||||||||||  ||| 
seq2  GGAAGTATGATCCGGACAAGGCTTTCTTCAAGT-CTCGGCTCACACCAGT  1144

seq1  TCTGTTGGCCCTTATCAGTTGGCTTGTCCCGCAATGTGGTT  1186
      ||||||||||| ||||  ||| |||||||||| ||||||||
seq2  TCTGTTGGCCC-TATCGATTGTCTTGTCCCGC-ATGTGGTT  1183


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