BAC Information

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BAC

Clone NameB6Ng01-180I19
Chromosome6 (Build37)
Map Location 28,882,351 - 29,011,922
singlet/doubletdoublet
Overlap geneLOC100041367, Lep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180I19.bB6Ng01-180I19.g
ACCGA006950GA006951
length870305
definitionB6Ng01-180I19.b B6Ng01-180I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,882,351 - 28,883,222)(29,011,618 - 29,011,922)
sequence
gaattctgggtaggatctcctgaggtcctgaggcctgcaggaactacctt
gttctggcttctggccaggatgaactgctgggtttctggagcgctaggtt
gcggggaggggcgttcctgttcacgccgccccacccttacacacggagga
ctccaaatcctccgcctgcccctgacctccaagccctgcttgcttcggaa
tgaagccttcaagttggcaccagatcattcccagaagccggaggcagaaa
tggcatgacccgcgcgggctgcatcccagatgcgtttctgtggaggcagt
ggcagggaaacgctgtcactgacttggggtgtttggaaaggggcggatat
ttgcgaactggtttttcacagaactccaggcactaatgtgaggccccccc
gtgatcatgttatgggagggcttgggagtttctgctgcctacaccctggt
gactgctgtacaattttggtttatctgtcgcaaaggacgcactgtggaaa
tcactttggcgtaaagaagccggctcccctgccgttccccagcagctgta
tgtgagccttggagcgtgtgttctcccaggcaaggtctctgtgcacccgt
cttcaaatccctgcctctccagtaagggaacccaagaagcagcctggaga
aatggattcatccgtaatgtgcttgtcctgccctggcccatctcaaaaaa
taaagtggagagcagccgaggaagagatctttgatgatcacacgtgtgtg
cgcacatgcacgcgcgcataccctaacatatacacacgagacatatatac
attacactcaatgcgtatacacttttcgagatttgctgaacactgttgca
agcgaggactgagtgtggtt
caaggctgtgtccatgggccagaatgctcaaagatatccaccccacaaga
attccatgttcctggagaccctgctctatctccctgtatcctatgtgcct
ctagagggatacagggtatggggtgcaacaatgactggtgctctgtaaag
ggaattgtctccggcagccatctctgcatcccacatgggtcactcagaca
tgcgaggcatctgcccggggctgatggacaagaatttattacagcatccc
tggctctgtccttggctctttgagctttttcctggaacacggggggtggg
gggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28882351_28883222
seq2: B6Ng01-180I19.b_42_911

seq1  GAATTCTGGGTAGGATCTCCTGAGGTCCTGAGGCAAGACAGGAACTAGCT  50
      ||||||||||||||||||||||||||||||||||  | ||||||||| ||
seq2  GAATTCTGGGTAGGATCTCCTGAGGTCCTGAGGCCTG-CAGGAACTACCT  49

seq1  TGTTCTGGCTTCTGGCCAGGATGAACTGCAGGGGTTCTGGAGCGCTAGGT  100
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TGTTCTGGCTTCTGGCCAGGATGAACTGCTGGGTTTCTGGAGCGCTAGGT  99

seq1  TGCGGGGAGGGGCGTTCCTGTTCAGGCCGCACAACCCTTACACAGGGAGG  150
      |||||||||||||||||||||||| ||||| | ||||||||||| |||||
seq2  TGCGGGGAGGGGCGTTCCTGTTCACGCCGCCCCACCCTTACACACGGAGG  149

seq1  ACTCCAGATCCTCCGCCTGCCCCTGACCTCCAAGCCCTGCAGTCTTCGGA  200
      |||||| |||||||||||||||||||||||||||||||||   |||||||
seq2  ACTCCAAATCCTCCGCCTGCCCCTGACCTCCAAGCCCTGCTTGCTTCGGA  199

seq1  ATGAAGCCTTCAAGTTGGCACCAGATCATTCCCAGAAACCGGAGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  ATGAAGCCTTCAAGTTGGCACCAGATCATTCCCAGAAGCCGGAGGCAGAA  249

seq1  ATGGCATGACCCACGCGGGCTGCATCCCAGATGCGTTTCTGTGGAGGCAG  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGACCCGCGCGGGCTGCATCCCAGATGCGTTTCTGTGGAGGCAG  299

seq1  TGGCAGGGAAACGCTGTCACTGACTTGGGGTGTTTGGAAAGCGGCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TGGCAGGGAAACGCTGTCACTGACTTGGGGTGTTTGGAAAGGGGCGGATA  349

seq1  ATTGGGAACTGGCTATTCACAGAACTCAGGGCACTAATGTGAGGCCCCGC  400
       ||| ||||||| | ||||||||||||  ||||||||||||||||||| |
seq2  TTTGCGAACTGGTTTTTCACAGAACTCCAGGCACTAATGTGAGGCCCCCC  399

seq1  AGTGATCATGTTAATGGAGGGCTTGGGAGTTTCTGCTGCCAGACACCCTG  450
       ||||||||||||  |||||||||||||||||||||||||  ||||||||
seq2  CGTGATCATGTTATGGGAGGGCTTGGGAGTTTCTGCTGCC-TACACCCTG  448

seq1  GTGACTGCTGTAGAATTTTGGCAGACAGAAGGCAAAGGACGCACTGTGGA  500
      |||||||||||| ||||||||   |      |||||||||||||||||||
seq2  GTGACTGCTGTACAATTTTGGTTTATCTGTCGCAAAGGACGCACTGTGGA  498

seq1  AATCACTAGAGCGTAGAGAAGCCGGCTCCCACAGCGTTCCCCAGCAGCTG  550
      |||||||   ||||| ||||||||||||||    ||||||||||||||||
seq2  AATCACTTTGGCGTAAAGAAGCCGGCTCCCCTGCCGTTCCCCAGCAGCTG  548

seq1  TATGTGAGCCTTGGAGCGTGTGTTCTCCCAGGCAAGGTCTCTGTGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCCTTGGAGCGTGTGTTCTCCCAGGCAAGGTCTCTGTGCACCC  598

seq1  TTCTTCAAATCCCTGCCTCTCCAGTAAGGGAACCCAAGAAGCAGCCTGGA  650
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAATCCCTGCCTCTCCAGTAAGGGAACCCAAGAAGCAGCCTGGA  648

seq1  GAAATGGATTCATCCGTAAAGTGCTTGTCCTGCCCTGGCCCAGCTCAAAA  700
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GAAATGGATTCATCCGTAATGTGCTTGTCCTGCCCTGGCCCATCTCAAAA  698

seq1  AATAAAGTGGAGAGCAGCCGAGGAAGAGATCTTTGATGAGCACACATGTG  750
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AATAAAGTGGAGAGCAGCCGAGGAAGAGATCTTTGATGATCACACGTGTG  748

seq1  TGCGCACAAGCACGCGCACATACACAAACATGTACACACAATAAATATAT  800
      |||||||| |||||||| ||||| | ||||| ||||||| | | ||||||
seq2  TGCGCACATGCACGCGCGCATACCCTAACATATACACACGAGACATATAT  798

seq1  ACATTACACAGAACGCATATACACATAAAGAGATTTGCTGAAAACTGGAG  850
      |||||||||  || || ||||||| |   ||||||||||||| ||||  |
seq2  ACATTACACTCAATGCGTATACACTTTTCGAGATTTGCTGAACACTGTTG  848

seq1  CAGGTGAGGACTGTGTGTGGTT  872
      || | |||||||| ||||||||
seq2  CAAGCGAGGACTGAGTGTGGTT  870

seq1: chr6_29011618_29011922
seq2: B6Ng01-180I19.g_69_373 (reverse)

seq1  TCCCCCCCACCCCCCGTGTTCCAGGAAAAAGCTCAAAGAGCCAAGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCACCCCCCGTGTTCCAGGAAAAAGCTCAAAGAGCCAAGGACAG  50

seq1  AGCCAGGGATGCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGATGCTGTAATAAATTCTTGTCCATCAGCCCCGGGCAGATGCC  100

seq1  TCGCATGTCTGAGTGACCCATGTGGGATGCAGAGATGGCTGCCGGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGTCTGAGTGACCCATGTGGGATGCAGAGATGGCTGCCGGAGACA  150

seq1  ATTCCCTTTACAGAGCACCAGTCATTGTTGCACCCCATACCCTGTATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTACAGAGCACCAGTCATTGTTGCACCCCATACCCTGTATCCC  200

seq1  TCTAGAGGCACATAGGATACAGGGAGATAGAGCAGGGTCTCCAGGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCACATAGGATACAGGGAGATAGAGCAGGGTCTCCAGGAACAT  250

seq1  GGAATTCTTGTGGGGTGGATATCATTGAGCATTCTGGCCCATGGACACAG  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAATTCTTGTGGGGTGGATATCTTTGAGCATTCTGGCCCATGGACACAG  300

seq1  CCTTG  305
      |||||
seq2  CCTTG  305