BAC Information

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BAC

Clone NameB6Ng01-181G16
Chromosome6 (Build37)
Map Location 29,693,367 - 29,839,385
singlet/doubletdoublet
Overlap geneSmo, 4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181G16.bB6Ng01-181G16.g
ACCGA007584GA007585
length3561,160
definitionB6Ng01-181G16.b B6Ng01-181G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,693,367 - 29,693,722)(29,838,238 - 29,839,385)
sequence
accatgttaacccaagcttgctttgaactctcagcaatcctcctgtctca
tcagccttctgggttctttttttttttttggtttttcaagacagggtttc
tctgtatagtcctggctgtcctggaactcactttgtagaccaggctggcc
tcgaactcagaaatccgcctacctctgcctcccgagtgctgggattaaag
gcgtgcgccaccacgcccggcgccttctgggttcttgattactggtgtga
accatcacatttagctgatacatagacactggagtgtacatacacatata
tttcaaaattaatcttttattgttttttaaatatttatttatttattgtg
gggtgt
gaattctgactgacaacttaaggggacttagaaccaccacggtactaaac
ctctggatatgtctttgagggagtttctagactaggttaacggacatagg
aagaccctcagcataggcagtaccacttgatggatgggagccctggacca
aagaaaaggagaaagcaccatcttcatctctttcatcagcattcttcttt
gctttctgactgtggatggctgtccttctgccaggacttcctgtcatgac
tggattatgcctgtgttgcttttgtcaggtgtttggtcctagcgacatgt
aaagggacggatacagcaagtaaccatctcagaactatagaagattaagt
attaatacctttctcatgtggatgctctcttagccaaagtgcctgcctgc
tccactgcccctccttttctttctggttttgtgagacaggatcttatgta
gcacaacctggcctcaaatttgttaaataagaaagaatagcctagaacat
tcgattcacctccttggcctcctgagtgctgggattacagatgtgtgcca
ccatccctggcttctacttaggtgtctctggagcagttttcatctctctt
gctttcatctctactgagagaacaatttcccttgacccagttgcagtctg
gcactgtttgcaggtaccaatgagcttgtaccacttagcaagtttagatg
acagcccaggtccctgctcctcactgtaaaatctaaccataacctccact
ctgctgcttcttgtcactctcgtacactcttgtacaaccttaatactctt
tcttactgagggagtaaactaggttgggaggggctctatccatttttctg
aattagtagagttctcttcacatatcttttactgatcctggtataggcca
actttaggttcacacatccggtattttgaaaagtcaaaaagacagttggt
gagtagttaagtattttaatgaaataatatacaaatgactattaatgtgg
tcagaattggaggtatctgttcacaatgacactcaccatggaggaatact
tcatagctgactactggagcctagaatttagaaacatttagcctgtgtgt
gaatacttactgaactcctaagtatatagtaagtccaccataggttacaa
tgtcatcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29693367_29693722
seq2: B6Ng01-181G16.b_49_404

seq1  ACCATGTTAACCCAAGCTTGCTTTGAACTCTCAGCAATCCTCCTGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTAACCCAAGCTTGCTTTGAACTCTCAGCAATCCTCCTGTCTCA  50

seq1  TCAGCCTTCTGGGTTCTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCTGGGTTCTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTC  100

seq1  TCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  150

seq1  TCGAACTCAGAAATCCGCCTACCTCTGCCTCCCGAGTGCTGGGATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTACCTCTGCCTCCCGAGTGCTGGGATTAAAG  200

seq1  GCGTGCGCCACCACGCCCGGCGCCTTCTGGGTTCTTGATTACTGGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACGCCCGGCGCCTTCTGGGTTCTTGATTACTGGTGTGA  250

seq1  ACCATCACATTTAGCTGATACATAGACACTGGAGTGTACATACACATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACATTTAGCTGATACATAGACACTGGAGTGTACATACACATATA  300

seq1  TTTCAAAATTAATCTTTTATTGTTTTTTAAATATTTATTTATTTATTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATTAATCTTTTATTGTTTTTTAAATATTTATTTATTTATTGTG  350

seq1  GGGTGT  356
      ||||||
seq2  GGGTGT  356

seq1: chr6_29838238_29839385
seq2: B6Ng01-181G16.g_66_1225 (reverse)

seq1  TTCGATGTACATTGT-ACCTATGGTGG-CCTACTATATTACTAGGGAG-T  47
      ||||||| ||||||| ||||||||||| | ||||||| ||||  |||| |
seq2  TTCGATG-ACATTGTAACCTATGGTGGACTTACTATA-TACTTAGGAGTT  48

seq1  CAGT-AGTAT---CACACAGACTAAATGTTTTCCTAAATTCTTAGCT-CA  92
      |||| |||||   ||||||| ||||||||||  |||||||||  ||| ||
seq2  CAGTAAGTATTCACACACAGGCTAAATGTTT--CTAAATTCTAGGCTCCA  96

seq1  GTAGTCAGCTATGGAGTA-TCCT-CATGGTGAGTGTCATTGTG-ACAGAT  139
      ||||||||||||| |||| |||| ||||||||||||||||||| ||||||
seq2  GTAGTCAGCTATGAAGTATTCCTCCATGGTGAGTGTCATTGTGAACAGAT  146

seq1  ACCT-CAATTCTGACCACATTAATAGTCATTTGTATA-TATTTCATTAAA  187
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTCCAATTCTGACCACATTAATAGTCATTTGTATATTATTTCATTAAA  196

seq1  ATACTTAACTACTCACC-ACTGTC-TTTTGACTTTTC-AAATACCGGATG  234
      ||||||||||||||||| |||||| |||||||||||| ||||||||||||
seq2  ATACTTAACTACTCACCAACTGTCTTTTTGACTTTTCAAAATACCGGATG  246

seq1  TGTGAACCTAAAGTTGGCCTATACCAGGATCAGTAAAAGATATGTGAAGA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCTAAAGTTGGCCTATACCAGGATCAGTAAAAGATATGTGAAGA  296

seq1  GAACTCTACTAATTCAGAAAAATGGATAGAGCCCCTCCCAACCTAGTTTA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTACTAATTCAGAAAAATGGATAGAGCCCCTCCCAACCTAGTTTA  346

seq1  CTCCCTCAGTAAGAAAGAGTATTAAGGTTGTACAAGAGTGTACGAGAGTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGTAAGAAAGAGTATTAAGGTTGTACAAGAGTGTACGAGAGTG  396

seq1  ACAAGAAGCAGCAGAGTGGAGGTTATGGTTAGATTTTACAGTGAGGAGCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCAGCAGAGTGGAGGTTATGGTTAGATTTTACAGTGAGGAGCA  446

seq1  GGGACCTGGGCTGTCATCTAAACTTGCTAAGTGGTACAAGCTCATTGGTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGGCTGTCATCTAAACTTGCTAAGTGGTACAAGCTCATTGGTA  496

seq1  CCTGCAAACAGTGCCAGACTGCAACTGGGTCAAGGGAAATTGTTCTCTCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACAGTGCCAGACTGCAACTGGGTCAAGGGAAATTGTTCTCTCA  546

seq1  GTAGAGATGAAAGCAAGAGAGATGAAAACTGCTCCAGAGACACCTAAGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGAAAGCAAGAGAGATGAAAACTGCTCCAGAGACACCTAAGTA  596

seq1  GAAGCCAGGGATGGTGGCACACATCTGTAATCCCAGCACTCAGGAGGCCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGGATGGTGGCACACATCTGTAATCCCAGCACTCAGGAGGCCA  646

seq1  AGGAGGTGAATCGAATGTTCTAGGCTATTCTTTCTTATTTAACAAATTTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGAATCGAATGTTCTAGGCTATTCTTTCTTATTTAACAAATTTG  696

seq1  AGGCCAGGTTGTGCTACATAAGATCCTGTCTCACAAAACCAGAAAGAAAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGTTGTGCTACATAAGATCCTGTCTCACAAAACCAGAAAGAAAA  746

seq1  GGAGGGGCAGTGGAGCAGGCAGGCACTTTGGCTAAGAGAGCATCCACATG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCAGTGGAGCAGGCAGGCACTTTGGCTAAGAGAGCATCCACATG  796

seq1  AGAAAGGTATTAATACTTAATCTTCTATAGTTCTGAGATGGTTACTTGCT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTATTAATACTTAATCTTCTATAGTTCTGAGATGGTTACTTGCT  846

seq1  GTATCCGTCCCTTTACATGTCGCTAGGACCAAACACCTGACAAAAGCAAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCGTCCCTTTACATGTCGCTAGGACCAAACACCTGACAAAAGCAAC  896

seq1  ACAGGCATAATCCAGTCATGACAGGAAGTCCTGGCAGAAGGACAGCCATC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATAATCCAGTCATGACAGGAAGTCCTGGCAGAAGGACAGCCATC  946

seq1  CACAGTCAGAAAGCAAAGAAGAATGCTGATGAAAGAGATGAAGATGGTGC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAGAAAGCAAAGAAGAATGCTGATGAAAGAGATGAAGATGGTGC  996

seq1  TTTCTCCTTTTCTTTGGTCCAGGGCTCCCATCCATCAAGTGGTACTGCCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTTCTTTGGTCCAGGGCTCCCATCCATCAAGTGGTACTGCCT  1046

seq1  ATGCTGAGGGTCTTCCTATGTCCGTTAACCTAGTCTAGAAACTCCCTCAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGGGTCTTCCTATGTCCGTTAACCTAGTCTAGAAACTCCCTCAA  1096

seq1  AGACATATCCAGAGGTTTAGTACCGTGGTGGTTCTAAGTCCCCTTAAGTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATCCAGAGGTTTAGTACCGTGGTGGTTCTAAGTCCCCTTAAGTT  1146

seq1  GTCAGTCAGAATTC  1148
      ||||||||||||||
seq2  GTCAGTCAGAATTC  1160