BAC Information

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BAC

Clone NameB6Ng01-182N21
Chromosome6 (Build37)
Map Location 109,135,399 - 109,304,659
singlet/doubletdoublet
Overlap geneLOC639110
Upstream geneSumf1, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182N21.bB6Ng01-182N21.g
ACCGA008642GA008643
length553610
definitionB6Ng01-182N21.b B6Ng01-182N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,135,399 - 109,135,955)(109,304,052 - 109,304,659)
sequence
ttaatgaccaacagaggtagggtgtgggtgtgggtagacattttccatta
ttcttagggttatgctgtttttttatttaatttacatgatgagaaaagca
tgacaaatttctacccttcctgatacttttttttcctttttgtggaggcc
atcatgaggtctcagtgtattttgagctatcatgacttgtgagtctatca
tgaagcctcaaagtctttgtttatatggagaattcatcatcattaaaaat
caaattctatttggatcttaagatatttacctaagatgggaaagctatat
atccacagagacatgtttatgtgtatttacttatagtagttttcttcata
gtggctcaaatatagaaacagatcaatagctcatgtgttcagtgtgcagc
aagcccctaaacaaatagtgctttggtggtttgaaagaatatggtttcca
caggctcatagggagtggcagcattgggaggtgtgatcttgttgaagaag
tgtgtcacttggggtgggctttgatgtttcacatggctaaaagcaatgtc
act

gaattcttttaaagaatactcagtacataaattcccctctagccaacatg
atactttgcagatttttaagaacagtcataatttagtggatttaggacac
tctttatttggaccatgtatttctacttgtgatacagaaaattgccattt
tctcaaagactggtagaatttaggagggtatcaggcccattagaaaacct
tagttcaaattctagacaaaccaagatttgagaataagtaaacactctat
gaatgacagataaggcctattctcaatgactgtaacccagattatactga
tcaaattaaaaacaaaacaagaaaacaacaacaaaaaccccagattttca
atgtgctcaaaaatcaatataaccactgttgtagggaaagaaactcttgt
taattgggtgttatgtaaattgcttaatgtcttatttattacttttcaaa
attcttacatgaaaaactggtttgataaaaaatccaaataatggctcatc
atgctgtggtggtttggatgtgaattgcccgccaggcttatatatttgaa
tacttgaactttagtttgtaaaactgtttgggaagaattaggagggtttg
gggattgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109135399_109135955
seq2: B6Ng01-182N21.b_46_604

seq1  GAATTCTTAATGACCAACAGAGGTAGGGTGTGGGTGTGGGTAGACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGACCAACAGAGGTAGGGTGTGGGTGTGGGTAGACATTTT  50

seq1  CCATTATTCTTAGGGTTATGCTGTTTTTTTATTTAATTTACATGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTCTTAGGGTTATGCTGTTTTTTTATTTAATTTACATGATGAGA  100

seq1  AAAGCATGACAAATTTCTACCCTTCCTGATACTTTTTTTTCCTTTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGACAAATTTCTACCCTTCCTGATACTTTTTTTTCCTTTTTGTG  150

seq1  GAGGCCATCATGAGGTCTCAGTGTATTTTGAGCTATCATGACTTGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATCATGAGGTCTCAGTGTATTTTGAGCTATCATGACTTGTGAGT  200

seq1  CTATCATGAAGCCTCAAAGTCTTTGTTTATATGGAGAATTCATCATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGAAGCCTCAAAGTCTTTGTTTATATGGAGAATTCATCATCATT  250

seq1  AAAAATCAAATTCTATTTGGATCTTAAGATATTTACCTAAGATGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAATTCTATTTGGATCTTAAGATATTTACCTAAGATGGGAAAG  300

seq1  CTATATATCCACAGAGACATGTTTATGTGTATTTACTTATAGTAGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATCCACAGAGACATGTTTATGTGTATTTACTTATAGTAGTTTTC  350

seq1  TTCATAGTGGCTCAAATATAGAAACAGATCAATAGCTCATGTGTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGGCTCAAATATAGAAACAGATCAATAGCTCATGTGTTCAGTG  400

seq1  TGCAGCAAGCCCCTAAACAAATAGTGCTTTGGTGGTTTGAAAGAATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAGCCCCTAAACAAATAGTGCTTTGGTGGTTTGAAAGAATATGG  450

seq1  TTTCCACAGGCTCATAGGGAGTGGCAGCATTGGGAGGTGTGATCTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGGCTCATAGGGAGTGGCAGCATTGGGAGGTGTGATCTTGTTG  500

seq1  AAGAAGTGTGTCACTTGGGGTGGGCTTTGATGTTTCACAT-GCT-AAAGC  548
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  AAGAAGTGTGTCACTTGGGGTGGGCTTTGATGTTTCACATGGCTAAAAGC  550

seq1  AATGTCACT  557
      |||||||||
seq2  AATGTCACT  559


seq1: chr6_109304052_109304659
seq2: B6Ng01-182N21.g_66_675 (reverse)

seq1  CAACAATCCC--AACCCTCCTAATTCTTCCCAAACAGTTTTACAAACTAA  48
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CAACAATCCCCAAACCCTCCTAATTCTTCCCAAACAGTTTTACAAACTAA  50

seq1  AGTTCAAGTATTCAAATATATAAGCCTGGCGGGCAATTCACATCCAAACC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTATTCAAATATATAAGCCTGGCGGGCAATTCACATCCAAACC  100

seq1  ACCACAGCATGATGAGCCATTATTTGGATTTTTTATCAAACCAGTTTTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCATGATGAGCCATTATTTGGATTTTTTATCAAACCAGTTTTTC  150

seq1  ATGTAAGAATTTTGAAAAGTAATAAATAAGACATTAAGCAATTTACATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAATTTTGAAAAGTAATAAATAAGACATTAAGCAATTTACATAA  200

seq1  CACCCAATTAACAAGAGTTTCTTTCCCTACAACAGTGGTTATATTGATTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAATTAACAAGAGTTTCTTTCCCTACAACAGTGGTTATATTGATTT  250

seq1  TTGAGCACATTGAAAATCTGGGGTTTTTGTTGTTGTTTTCTTGTTTTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACATTGAAAATCTGGGGTTTTTGTTGTTGTTTTCTTGTTTTGTT  300

seq1  TTTAATTTGATCAGTATAATCTGGGTTACAGTCATTGAGAATAGGCCTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGATCAGTATAATCTGGGTTACAGTCATTGAGAATAGGCCTTA  350

seq1  TCTGTCATTCATAGAGTGTTTACTTATTCTCAAATCTTGGTTTGTCTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTCATAGAGTGTTTACTTATTCTCAAATCTTGGTTTGTCTAGA  400

seq1  ATTTGAACTAAGGTTTTCTAATGGGCCTGATACCCTCCTAAATTCTACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTAAGGTTTTCTAATGGGCCTGATACCCTCCTAAATTCTACCA  450

seq1  GTCTTTGAGAAAATGGCAATTTTCTGTATCACAAGTAGAAATACATGGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGAAAATGGCAATTTTCTGTATCACAAGTAGAAATACATGGTC  500

seq1  CAAATAAAGAGTGTCCTAAATCCACTAAATTATGACTGTTCTTAAAAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGAGTGTCCTAAATCCACTAAATTATGACTGTTCTTAAAAATC  550

seq1  TGCAAAGTATCATGTTGGCTAGAGGGGAATTTATGTACTGAGTATTCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTATCATGTTGGCTAGAGGGGAATTTATGTACTGAGTATTCTTT  600

seq1  AAAAGAATTC  608
      ||||||||||
seq2  AAAAGAATTC  610


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