BAC Information

Click to search

BAC

Clone NameB6Ng01-184H02
Chromosome6 (Build37)
Map Location 86,530,367 - 86,692,368
singlet/doubletdoublet
Overlap geneAsprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4
Upstream geneAlms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1
Downstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184H02.bB6Ng01-184H02.g
ACCGA009821GA009822
length1,0411,111
definitionB6Ng01-184H02.b B6Ng01-184H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,691,346 - 86,692,368)(86,530,367 - 86,531,471)
sequence
gaattctagcacttgggagactgagaaagaaggattgctttgtttgaggt
cagcctgggctacatatagcaaggccttgttttattaaggagagaggggg
agacagagagagagaaggttgtaatggttgttatgtttaagctgaacctt
gggggaagctttccacatgggctggggaggaaaattgcagacaagaacag
cacagagcctgtctttggaaaggcttctggcgaacacacagcatgttggg
aaggtgggctgtgtccacccttccatgccaaggtaaggcatgaggatgtt
cctcgggcctcccagctcatacagcaaaggatgccgtagagactcactgc
tgcctcatcttgccttgctgaccatgaacagaatcagctgatgcaggatc
gcactcccttcctcagggcttaggcactgatgacaacaccctcatcagag
tgatggtctcaagagcagagattgacatgctggacatccgggcgagcttc
aagaggctctacgggaagtctttgtactctttcatcaaggtaggaacatc
atcagggtccggccttagggtgcaggaccagtggctttctcctccctggc
atctgccattccctgtgaagatggcgcctgcttcaggaattcctaggctt
gccccctttctcatggtatataagaagtatttacctgctaagtacagtaa
caattttatgtgggccccaaataagaatggacattttggggcagtgattt
agttctgcttttatttaaagcctgtatagaataacaagccctgacatctt
aagtaagtgacctactgttcaagtgaacacagagggctgaggaggaagca
ccaccccctgacctcagtccccaaaggttgggtgagaatgagtactcagg
gggctgaggttagagaactgactgttcttccaagagaccttccttttcta
tttccctagccacccccagggacagctcacaattcacccgtaactccagc
ttctaggaaatctgacttccctcttctggcctccttgtagg
gaattctctccagctcctggtgtgttgaccgttgggtaatgccacctaag
gaacctggagagacagggaggactgtaattatgaaaagaatggccccggt
gggctgaggagaggtagagatggggtccaagggagaccaaaggagagcct
tggcgtcgcctcggcacgccatactttacaagccagttctcctcacttgg
ttggactgcttcaccatagatctatggcagtgtcccagggttgcgggttc
tgcaggaccacccaggctaggggatgagcccgtcagggagcagttgcagg
tcactgttgactcctgggtggtgtctgtcagccaagtggacatcggctgg
agtggagttagattggggacggaaggtattagcccggccgctgtctgaaa
tctgcaccgaactcctcattccagaaaaagcagctaacatgtgtccggac
agctgggggagactcgggcctctgaggcacagcaaggacaaagcctgaga
cattatcaacacgaagaagtatgagatgagacagaagtgtcctggaggaa
agagatcaaaagcgaggaggagcttgggggcccagaagcgggagcaggat
cagatttctcctgtgtccgtccatggctggatcggtggagattgcgtgga
gatgtttgcagctcatccagagcacgtttaatctatatttagaaaacaac
caaaaggaatttaaaagttgagcctgtgactaaaatttttagcccgtgac
tatgataattttttttaaaaaaggtttagtagccagtggtaattataact
gctaccaaggcctaataacttatcagttcaactttgaactctgaagtctt
agtgttgtgtgtggtctataaaatctcatttttcacatgcccttaaatca
cttcctcagaactttacaactttaggttcacacacctttaaattatgtcc
tagactttacaagttacattatattttttttttaaaggatttatttattg
tatatgtaagtacacctgtagcctgtctcagaccactaggagagagcgtc
gatctcattatgaatgctgtgagccacaatgtggttgctctggaaattgg
acctcaggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86691346_86692368
seq2: B6Ng01-184H02.b_44_1084 (reverse)

seq1  CCTACA--GAGGCCAGAAGAGGG-AGTCAGA-TTCCTAG-AGCTGGAGTT  45
      ||||||  ||||||||||||||| ||||||| ||||||| ||||||||||
seq2  CCTACAAGGAGGCCAGAAGAGGGAAGTCAGATTTCCTAGAAGCTGGAGTT  50

seq1  ACGGGTG-ATTGTGAGCTGT-CCTGGGGGT-GCT--GGGAATGGAAA--G  88
      ||||||| |||||||||||| ||||||||| |||  || ||| ||||  |
seq2  ACGGGTGAATTGTGAGCTGTCCCTGGGGGTGGCTAGGGAAATAGAAAAGG  100

seq1  GAGGTCTCTTGGGAGAACAGTCAGTTCTCTTAACTCAG-CCCCTG-GTAC  136
       ||||||||||| ||||||||||||||||| | ||||| |||||| ||||
seq2  AAGGTCTCTTGGAAGAACAGTCAGTTCTCTAACCTCAGCCCCCTGAGTAC  150

seq1  TCATTCTCA-CCAACCTTT-GGGACTGAGGTCA-GGGGTGGTGCTTCCTC  183
      ||||||||| ||||||||| ||||||||||||| ||||||||||||||||
seq2  TCATTCTCACCCAACCTTTGGGGACTGAGGTCAGGGGGTGGTGCTTCCTC  200

seq1  CTCAG-CCTCTGTGTTCACTTGAACAGTAGGTCACTTACTTAAGATGTCA  232
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCTCTGTGTTCACTTGAACAGTAGGTCACTTACTTAAGATGTCA  250

seq1  GGGCTTGTTATTCTATACAGGCTTTAAATAAAAGCAGAACTAAATCACTG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTTATTCTATACAGGCTTTAAATAAAAGCAGAACTAAATCACTG  300

seq1  CCCCAAAATGTCCATTCTTATTTGGGGCCCACATAAAATTGTTACTGTAC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAATGTCCATTCTTATTTGGGGCCCACATAAAATTGTTACTGTAC  350

seq1  TTAGCAGGTAAATACTTCTTATATACCATGAGAAAGGGGGCAAGCCTAGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGTAAATACTTCTTATATACCATGAGAAAGGGGGCAAGCCTAGG  400

seq1  AATTCCTGAAGCAGGCGCCATCTTCACAGGGAATGGCAGATGCCAGGGAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAAGCAGGCGCCATCTTCACAGGGAATGGCAGATGCCAGGGAG  450

seq1  GAGAAAGCCACTGGTCCTGCACCCTAAGGCCGGACCCTGATGATGTTCCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCACTGGTCCTGCACCCTAAGGCCGGACCCTGATGATGTTCCT  500

seq1  ACCTTGATGAAAGAGTACAAAGACTTCCCGTAGAGCCTCTTGAAGCTCGC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATGAAAGAGTACAAAGACTTCCCGTAGAGCCTCTTGAAGCTCGC  550

seq1  CCGGATGTCCAGCATGTCAATCTCTGCTCTTGAGACCATCACTCTGATGA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGTCCAGCATGTCAATCTCTGCTCTTGAGACCATCACTCTGATGA  600

seq1  GGGTGTTGTCATCAGTGCCTAAGCCCTGAGGAAGGGAGTGCGATCCTGCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTCATCAGTGCCTAAGCCCTGAGGAAGGGAGTGCGATCCTGCA  650

seq1  TCAGCTGATTCTGTTCATGGTCAGCAAGGCAAGATGAGGCAGCAGTGAGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGATTCTGTTCATGGTCAGCAAGGCAAGATGAGGCAGCAGTGAGT  700

seq1  CTCTACGGCATCCTTTGCTGTATGAGCTGGGAGGCCCGAGGAACATCCTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGGCATCCTTTGCTGTATGAGCTGGGAGGCCCGAGGAACATCCTC  750

seq1  ATGCCTTACCTTGGCATGGAAGGGTGGACACAGCCCACCTTCCCAACATG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTACCTTGGCATGGAAGGGTGGACACAGCCCACCTTCCCAACATG  800

seq1  CTGTGTGTTCGCCAGAAGCCTTTCCAAAGACAGGCTCTGTGCTGTTCTTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTCGCCAGAAGCCTTTCCAAAGACAGGCTCTGTGCTGTTCTTG  850

seq1  TCTGCAATTTTCCTCCCCAGCCCATGTGGAAAGCTTCCCCCAAGGTTCAG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTTTCCTCCCCAGCCCATGTGGAAAGCTTCCCCCAAGGTTCAG  900

seq1  CTTAAACATAACAACCATTACAACCTTCTCTCTCTCTGTCTCCCCCTCTC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATAACAACCATTACAACCTTCTCTCTCTCTGTCTCCCCCTCTC  950

seq1  TCCTTAATAAAACAAGGCCTTGCTATATGTAGCCCAGGCTGACCTCAAAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATAAAACAAGGCCTTGCTATATGTAGCCCAGGCTGACCTCAAAC  1000

seq1  AAAGCAATCCTTCTTTCTCAGTCTCCCAAGTGCTAGAATTC  1023
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCCTTCTTTCTCAGTCTCCCAAGTGCTAGAATTC  1041

seq1: chr6_86530367_86531471
seq2: B6Ng01-184H02.g_65_1175

seq1  GAATTCTCTCCAGCTCCTGGTGTGTTGACCGTTGGGTAATGCCACCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAGCTCCTGGTGTGTTGACCGTTGGGTAATGCCACCTAAG  50

seq1  GAACCTGGAGAGACAGGGAGGACTGTAATTATGAAAAGAATGGCCCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGAGACAGGGAGGACTGTAATTATGAAAAGAATGGCCCCGGT  100

seq1  GGGCTGAGGAGAGGTAGAGATGGGGTCCAAGGGAGACCAAAGGAGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGAGAGGTAGAGATGGGGTCCAAGGGAGACCAAAGGAGAGCCT  150

seq1  TGGCGTCGCCTCGGCACGCCATACTTTACAAGCCAGTTCTCCTCACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCGCCTCGGCACGCCATACTTTACAAGCCAGTTCTCCTCACTTGG  200

seq1  TTGGACTGCTTCACCATAGATCTATGGCAGTGTCCCAGGGTTGCGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTGCTTCACCATAGATCTATGGCAGTGTCCCAGGGTTGCGGGTTC  250

seq1  TGCAGGACCACCCAGGCTAGGGGATGAGCCCGTCAGGGAGCAGTTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACCACCCAGGCTAGGGGATGAGCCCGTCAGGGAGCAGTTGCAGG  300

seq1  TCACTGTTGACTCCTGGGTGGTGTCTGTCAGCCAAGTGGACATCGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGACTCCTGGGTGGTGTCTGTCAGCCAAGTGGACATCGGCTGG  350

seq1  AGTGGAGTTAGATTGGGGACGGAAGGTATTAGCCCGGCCGCTGTCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTTAGATTGGGGACGGAAGGTATTAGCCCGGCCGCTGTCTGAAA  400

seq1  TCTGCACCGAACTCCTCATTCCAGAAAAAGCAGCTAACATGTGTCCGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACCGAACTCCTCATTCCAGAAAAAGCAGCTAACATGTGTCCGGAC  450

seq1  AGCTGGGGGAGACTCGGGCCTCTGAGGCACAGCAAGGACAAAGCCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGGAGACTCGGGCCTCTGAGGCACAGCAAGGACAAAGCCTGAGA  500

seq1  CATTATCAACACGAAGAAGTATGAGATGAGACAGAAGTGTCCTGGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAACACGAAGAAGTATGAGATGAGACAGAAGTGTCCTGGAGGAA  550

seq1  AGAGATCAAAAGCGAGGAGGAGCTTGGGGGCCCAGAAGCGGGAGCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAAAAGCGAGGAGGAGCTTGGGGGCCCAGAAGCGGGAGCAGGAT  600

seq1  CAGATTTCTCCTGTGTCCGTCCATGGCTGGATCGGTGGAGATTGCGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTCCTGTGTCCGTCCATGGCTGGATCGGTGGAGATTGCGTGGA  650

seq1  GATGTTTGCAGCTCATCCAGAGCACGTTTAATCTATATTTAGAAAACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGCAGCTCATCCAGAGCACGTTTAATCTATATTTAGAAAACAAC  700

seq1  CAAAAGGAATTTAAAAGTTGAGCCTGTGACTAAAATTTTTAGCCCGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAATTTAAAAGTTGAGCCTGTGACTAAAATTTTTAGCCCGTGAC  750

seq1  TATGATAA-TTTTTTTAAAAAAGGTTTAGTAGCCAGTGGTAATTATAACT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAATTTTTTTTAAAAAAGGTTTAGTAGCCAGTGGTAATTATAACT  800

seq1  GCTACCAAGGCCTAATAACTTATCAGTTCAACTTTGAACTCTGAAGTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAAGGCCTAATAACTTATCAGTTCAACTTTGAACTCTGAAGTCTT  850

seq1  AGTGTTGTGTGTGGTCTAT-AAATCTCATTTTTCACATG-CCTTAAATCA  897
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AGTGTTGTGTGTGGTCTATAAAATCTCATTTTTCACATGCCCTTAAATCA  900

seq1  CTTCCTCAGAACTTTACAAC-TTAGGTTCACACACC-TTAAATTATGTCC  945
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CTTCCTCAGAACTTTACAACTTTAGGTTCACACACCTTTAAATTATGTCC  950

seq1  TTAGACCTTTACAAGTTACA-TATATTTTTTTTT--AAAGATTTATTTAT  992
       |||| |||||||||||||| |||||||||||||  || |||||||||||
seq2  -TAGA-CTTTACAAGTTACATTATATTTTTTTTTTAAAGGATTTATTTAT  998

seq1  TGTTATATGTAAGTACA-CTGTAG-CTGTCCTCAGACACACCAGGAGAGA  1040
      || |||||||||||||| |||||| |||| ||||||| ||| ||||||||
seq2  TG-TATATGTAAGTACACCTGTAGCCTGT-CTCAGAC-CACTAGGAGAGA  1045

seq1  GCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCT---G  1087
      ||||| |||||||||||| || | |||||||||| |||||||||||   |
seq2  GCGTC-GATCTCATTATGAAT-GCTGTGAGCCACAATGTGGTTGCTCTGG  1093

seq1  GGATTTGAACTCAGGCCC  1105
        ||| || |||||||||
seq2  AAATTGGACCTCAGGCCC  1111