BAC Information

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BAC

Clone NameB6Ng01-184J20
Chromosome6 (Build37)
Map Location 93,434,216 - 93,581,055
singlet/doubletdoublet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26, Lrig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184J20.bB6Ng01-184J20.g
ACCGA009945GA009946
length555967
definitionB6Ng01-184J20.b B6Ng01-184J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,580,495 - 93,581,055)(93,434,216 - 93,435,184)
sequence
cacatcatctcaatgtcagagtctagatgaagtacacaggcaactcaaaa
ggatgaatcagacagtcagaaacttcaaagatggctgaatagactactga
caaaaaaaaattgaggcacaggaaataaaaaaaacctgttaattatagaa
caaaaattagagatagtcacatctttcattaaaccaatagtcaatagtag
aagatggccacgctgaaaaccatggactttggaaagataagaagattatc
ccagttttgagatgacaaaggtttatcccaaaattgaaaaaagaggaggg
cttggcctatttccaaaacaaatgatatttcattaaaaatgaaagggcat
ctttagtatttgctttgggaaatgtgattttgttgttatttaatgaagtt
aaaattagatcgcagtaagttcagtcatattttacctatagctcatttga
ttttaacctgttgtagacttatgccacctcaaagcatgctgtcaatcaaa
gcatagttgcatttcttttgacagatacaaagatggtttataatgggggg
ggggg

gaattccttatttgtattatttttatttccatctcttgacttgttgttcc
agtaaaacttcagcactatattaaataaaggaggcaagagtagatactct
tgtcttgaaaggtgtatgcccctgtcattttgttgaatttatagtgcttg
gtggttcctaagtcctcttttatacaaaaggtgacttagcatcatttttt
tcttcctataaccccttgggttcaataatcttttgcttaagtcaaaaata
ttcctgtcagtgtcttctacagggctggtttggtagtcataaattccttt
agcttacattatatataaatgtaaatgtattatatataaatgtatattta
tatatgtaaaggggtttttttcaccttttacttatgatggataattttac
tgggtatattaattgaacttggcagttgtggtctttcataatttgaaaca
cataattagaataccatcttgctacaaataaaggtgtttactgagaattc
agtagttattgtgatggtctttaaatgtgacttcatctttctctcttaca
gctttcaatatactctctttattctgcacattcagtgttttatactatga
ataaacagttctatcagtttgatgttctgtgtatctcttgtatctgaatg
ggcttcaatttttctgtatttgggaggtatgtgtcatattcaagagagac
tagattgcagcacaattaaggttatattttcctttgttagactcgtattc
taggtaccagactccatgtctactacatcctattggttgagtactgtctg
tagaaactgtcactatttggtgtttaacccacttgggtgatagaggataa
gatgactataaaaaccaacatacaacaacagatacttgtttttagaaagt
caaagggcctgtgtcactaatattaatataagtatcataagttattgggg
gagcctatccagtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93580495_93581055
seq2: B6Ng01-184J20.b_47_607 (reverse)

seq1  CCCCCCCCCCCATTATAAACCATCTTTGTATCTGTCAAAAGAAATGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCATTATAAACCATCTTTGTATCTGTCAAAAGAAATGCAAC  50

seq1  TATGCTTTGATTGACAGCATGCTTTGAGGTGGCATAAGTCTACAACAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTGATTGACAGCATGCTTTGAGGTGGCATAAGTCTACAACAGGT  100

seq1  TAAAATCAAATGAGCTATAGGTAAAATATGACTGAACTTACTGCGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAATGAGCTATAGGTAAAATATGACTGAACTTACTGCGATCTA  150

seq1  ATTTTAACTTCATTAAATAACAACAAAATCACATTTCCCAAAGCAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTTCATTAAATAACAACAAAATCACATTTCCCAAAGCAAATAC  200

seq1  TAAAGATGCCCTTTCATTTTTAATGAAATATCATTTGTTTTGGAAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGCCCTTTCATTTTTAATGAAATATCATTTGTTTTGGAAATAGG  250

seq1  CCAAGCCCTCCTCTTTTTTCAATTTTGGGATAAACCTTTGTCATCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTCCTCTTTTTTCAATTTTGGGATAAACCTTTGTCATCTCAAA  300

seq1  ACTGGGATAATCTTCTTATCTTTCCAAAGTCCATGGTTTTCAGCGTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATAATCTTCTTATCTTTCCAAAGTCCATGGTTTTCAGCGTGGCC  350

seq1  ATCTTCTACTATTGACTATTGGTTTAATGAAAGATGTGACTATCTCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTACTATTGACTATTGGTTTAATGAAAGATGTGACTATCTCTAAT  400

seq1  TTTTGTTCTATAATTAACAGGTTTTTTTTATTTCCTGTGCCTCAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTATAATTAACAGGTTTTTTTTATTTCCTGTGCCTCAATTTTT  450

seq1  TTTTGTCAGTAGTCTATTCAGCCATCTTTGAAGTTTCTGACTGTCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGTAGTCTATTCAGCCATCTTTGAAGTTTCTGACTGTCTGATT  500

seq1  CATCCTTTTGAGTTGCCTGTGTACTTCATCTAGACTCTGACATTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTGAGTTGCCTGTGTACTTCATCTAGACTCTGACATTGAGATG  550

seq1  ATGTGGAATTC  561
      |||||||||||
seq2  ATGTGGAATTC  561


seq1: chr6_93434216_93435184
seq2: B6Ng01-184J20.g_66_1032

seq1  GAATTCCTTATTTGTATTATTTTTATTTCCATCTCTTGACTTGTTGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTGTATTATTTTTATTTCCATCTCTTGACTTGTTGTTCC  50

seq1  AGTAAAACTTCAGCACTATATTAAATAAAGGAGGCAAGAGTAGATACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTTCAGCACTATATTAAATAAAGGAGGCAAGAGTAGATACTCT  100

seq1  TGTCTTGAAAGGTGTATGCCCCTGTCATTTTGTTGAATTTATAGTGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAGGTGTATGCCCCTGTCATTTTGTTGAATTTATAGTGCTTG  150

seq1  GTGGTTCCTAAGTCCTCTTTTATACAAAAGGTGACTTAGCATCATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCTAAGTCCTCTTTTATACAAAAGGTGACTTAGCATCATTTTTT  200

seq1  TCTTCCTATAACCCCTTGGGTTCAATAATCTTTTGCTTAAGTCAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATAACCCCTTGGGTTCAATAATCTTTTGCTTAAGTCAAAAATA  250

seq1  TTCCTGTCAGTGTCTTCTACAGGGCTGGTTTGGTAGTCATAAATTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCAGTGTCTTCTACAGGGCTGGTTTGGTAGTCATAAATTCCTTT  300

seq1  AGCTTACATTATATATAAATGTAAATGTATTATATATAAATGTATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACATTATATATAAATGTAAATGTATTATATATAAATGTATATTTA  350

seq1  TATATGTAAAGGGGTTTTTTTCACCTTTTACTTATGATGGATAATTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAAAGGGGTTTTTTTCACCTTTTACTTATGATGGATAATTTTAC  400

seq1  TGGGTATATTAATTGAACTTGGCAGTTGTGGTCTTTCATAATTTGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATATTAATTGAACTTGGCAGTTGTGGTCTTTCATAATTTGAAACA  450

seq1  CATAATTAGAATACCATCTTGCTACAAATAAAGGTGTTTACTGAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAGAATACCATCTTGCTACAAATAAAGGTGTTTACTGAGAATTC  500

seq1  AGTAGTTATTGTGATGGTCTTTAAATGTGACTTCATCTTTCTCTCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTATTGTGATGGTCTTTAAATGTGACTTCATCTTTCTCTCTTACA  550

seq1  GCTTTCAATATACTCTCTTTATTCTGCACATTCAGTGTTTTATACTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAATATACTCTCTTTATTCTGCACATTCAGTGTTTTATACTATGA  600

seq1  ATAAACAGTTCTATCAGTTTGATGTTCTGTGTATCTCTTGTATCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTTCTATCAGTTTGATGTTCTGTGTATCTCTTGTATCTGAATG  650

seq1  GGCTTCAATTTTTCTGTATTTGGGAGGTATGTGTCATATTCAAGAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAATTTTTCTGTATTTGGGAGGTATGTGTCATATTCAAGAGAGAC  700

seq1  TAGATTGCAGCACAATTAAGGTTATATTTTCCTTTGTTAGACTCGTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCAGCACAATTAAGGTTATATTTTCCTTTGTTAGACTCGTATTC  750

seq1  TAGGTACCAGACTCCATGTCTACTACATCCTATTGGTTGAGTACTGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCAGACTCCATGTCTACTACATCCTATTGGTTGAGTACTGTCTG  800

seq1  TAGAAACTGTCACTATTTGGTGTTTAACCCACTTGGGTGATAGAGTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGAAACTGTCACTATTTGGTGTTTAACCCACTTGGGTGATAGAGGATAA  850

seq1  GATGACTATAAAAACCAACA-ACAACAACAGATACTTG-TTTTAGAAAGT  898
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GATGACTATAAAAACCAACATACAACAACAGATACTTGTTTTTAGAAAGT  900

seq1  CAAAGGGCCCTGTGTACACTAAATATTATTATAAGTTATTATAAGTTATT  948
      ||||||| ||||||| |||| ||||||| |||||| ||| ||||||||||
seq2  CAAAGGG-CCTGTGT-CACT-AATATTAATATAAG-TATCATAAGTTATT  946

seq1  -GGGGAGCCTATCACAGTGAGA  969
       |||||||||||| ||||||||
seq2  GGGGGAGCCTATC-CAGTGAGA  967


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