BAC Information

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BAC

Clone NameB6Ng01-184M17
Chromosome6 (Build37)
Map Location 103,352,840 - 103,542,475
singlet/doubletdoublet
Overlap geneChl1, LOC666141
Upstream geneCntn3
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184M17.bB6Ng01-184M17.g
ACCGA010079GA010080
length1,148413
definitionB6Ng01-184M17.b B6Ng01-184M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,541,330 - 103,542,475)(103,352,840 - 103,353,258)
sequence
gaattcaggaatcaatgcaagctcttctaacccagcccttgtatggaata
agctccgttcccacctcctgcagctgcagttgctgctgctgtccttggct
actgctacaccatagcctgttttggccctgcgtgggtcaaatatcagcag
ggcagttctagctcacctacttaatatgaaataaatgtgtgtgatctaaa
gaacatggttgcatctttaggaaatccaatttataaaaaagggaatctgg
ctttaccacagctcaccttacctctgtctctacagtattttcttatttat
ccaacactggtgcagaaatatgtggataaatttgttatttattatataac
ctaaaagcacacacacatttctcatctgctgttgtttgtaaatctaaaaa
gtttttttttccctcatgccacttgacttttagatgtcaaaagtatagaa
agcactgtgagaggaattctcctttgagagaattatgagtggtttacaaa
attaaaggctaaaacatttcaactaattattctccccaattttaccttca
tttcttgaaatgcacaggaagggggattgagaacatatttcacagagttg
aaacttcaattcttaagaagcccctaaggatagattctagtcttatgttt
actgttttgatttcactgtgtagttaagtacatgtctctagttaacagat
ggaaaataaaaacaactacgataaacaaagccccattaaatattcttttg
ccatatctttctagttctcaagaggtcttatttcttaaaagcaattccta
agatatagtaagtaatttaatggtcaacttgaaaacttcaaatattttta
tttcttttatgtgtgcccatagtactataagatgtatagatgcttcaaat
tgtctaattaataaatttgaaagatatattcatgagctgtatgataatct
ttaagtcatgaagaaatctgtagtaaagcaattatgaaatttaattcaaa
tataagtgatactacaatctagtatccatttaatttatattttccctttg
aattgttaatactttctagaaaatttcaatattattctgaataacctttc
ctcactggtaatgtaaaggaattataaaccataagagctgagaaatct

aaaagtagatactaagcaaaccattccattaccagtgtttaagtctctgt
gggactttaaatttttctcccttgaagctaaattcatgtttttaaagttt
ggcttacattttattttgaaaagatgcagtaaacacaatgaagtttttac
tgctgtataaaaccgaaaggttatggaaaacaccctgtgttccaccattt
gatatggtatttgattgtagcgggtggggggggggggcgcgacaatgtgt
ctttaaatagaaactcttgggtttcctcatgaaccaaattcaatcatttg
ttcacctgctcatcacattttgttctacatttgccatgcactggactcat
cttacaaaactaaataaactctgaaaattatggactacagcattaaaacc
tattccctggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103541330_103542475
seq2: B6Ng01-184M17.b_45_1192 (reverse)

seq1  AGATTTCTCAAGCTCTTTATGGTTTAT-ATTCCTTTACATTAACCAGTGA  49
      ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||
seq2  AGATTTCTC-AGCTC-TTATGGTTTATAATTCCTTTACATT-ACCAGTGA  47

seq1  GGAAA-GTTATTCAGAATAATA-TGAAATTTTCTAG-AAGTATTAACAAT  96
      ||||| |||||||||||||||| ||||||||||||| |||||||||||||
seq2  GGAAAGGTTATTCAGAATAATATTGAAATTTTCTAGAAAGTATTAACAAT  97

seq1  TCAAAGGGAAAATAATAAATAAATGGATACTAGATTGTAGTATCACTATA  146
      ||||||||||||||  || |||||||||||||||||||||||||||| ||
seq2  TCAAAGGGAAAATATAAATTAAATGGATACTAGATTGTAGTATCACT-TA  146

seq1  T-TTTGAATTAAATTTCATAATTGCTTTACTACAGATTTCTTCATGACTT  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATTAAATTTCATAATTGCTTTACTACAGATTTCTTCATGACTT  196

seq1  AAAGATTATCATACAGCTCATGAATATATCTTTCAAATTTATTAATTAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATCATACAGCTCATGAATATATCTTTCAAATTTATTAATTAGA  246

seq1  CAATTTGAAGCATCTATACATCTTATAGTACTATGGGCACACATAAAAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAAGCATCTATACATCTTATAGTACTATGGGCACACATAAAAGA  296

seq1  AATAAAAATATTTGAAGTTTTCAAGTTGACCATTAAATTACTTACTATAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATATTTGAAGTTTTCAAGTTGACCATTAAATTACTTACTATAT  346

seq1  CTTAGGAATTGCTTTTAAGAAATAAGACCTCTTGAGAACTAGAAAGATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAATTGCTTTTAAGAAATAAGACCTCTTGAGAACTAGAAAGATAT  396

seq1  GGCAAAAGAATATTTAATGGGGCTTTGTTTATCGTAGTTGTTTTTATTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGAATATTTAATGGGGCTTTGTTTATCGTAGTTGTTTTTATTTT  446

seq1  CCATCTGTTAACTAGAGACATGTACTTAACTACACAGTGAAATCAAAACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTTAACTAGAGACATGTACTTAACTACACAGTGAAATCAAAACA  496

seq1  GTAAACATAAGACTAGAATCTATCCTTAGGGGCTTCTTAAGAATTGAAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATAAGACTAGAATCTATCCTTAGGGGCTTCTTAAGAATTGAAGT  546

seq1  TTCAACTCTGTGAAATATGTTCTCAATCCCCCTTCCTGTGCATTTCAAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCTGTGAAATATGTTCTCAATCCCCCTTCCTGTGCATTTCAAGA  596

seq1  AATGAAGGTAAAATTGGGGAGAATAATTAGTTGAAATGTTTTAGCCTTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGTAAAATTGGGGAGAATAATTAGTTGAAATGTTTTAGCCTTTA  646

seq1  ATTTTGTAAACCACTCATAATTCTCTCAAAGGAGAATTCCTCTCACAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAACCACTCATAATTCTCTCAAAGGAGAATTCCTCTCACAGTG  696

seq1  CTTTCTATACTTTTGACATCTAAAAGTCAAGTGGCATGAGGGAAAAAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATACTTTTGACATCTAAAAGTCAAGTGGCATGAGGGAAAAAAAA  746

seq1  ACTTTTTAGATTTACAAACAACAGCAGATGAGAAATGTGTGTGTGCTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGATTTACAAACAACAGCAGATGAGAAATGTGTGTGTGCTTTT  796

seq1  AGGTTATATAATAAATAACAAATTTATCCACATATTTCTGCACCAGTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATATAATAAATAACAAATTTATCCACATATTTCTGCACCAGTGTT  846

seq1  GGATAAATAAGAAAATACTGTAGAGACAGAGGTAAGGTGAGCTGTGGTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATAAGAAAATACTGTAGAGACAGAGGTAAGGTGAGCTGTGGTAA  896

seq1  AGCCAGATTCCCTTTTTTATAAATTGGATTTCCTAAAGATGCAACCATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTCCCTTTTTTATAAATTGGATTTCCTAAAGATGCAACCATGT  946

seq1  TCTTTAGATCACACACATTTATTTCATATTAAGTAGGTGAGCTAGAACTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGATCACACACATTTATTTCATATTAAGTAGGTGAGCTAGAACTG  996

seq1  CCCTGCTGATATTTGACCCACGCAGGGCCAAAACAGGCTATGGTGTAGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGATATTTGACCCACGCAGGGCCAAAACAGGCTATGGTGTAGCA  1046

seq1  GTAGCCAAGGACAGCAGCAGCAACTGCAGCTGCAGGAGGTGGGAACGGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGGACAGCAGCAGCAACTGCAGCTGCAGGAGGTGGGAACGGAG  1096

seq1  CTTATTCCATACAAGGGCTGGGTTAGAAGAGCTTGCATTGATT-CTGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTATTCCATACAAGGGCTGGGTTAGAAGAGCTTGCATTGATTCCTGAAT  1146

seq1  TC  1146
      ||
seq2  TC  1148


seq1: chr6_103352840_103353258
seq2: B6Ng01-184M17.g_66_484

seq1  GAATTCAAAAGTAGATACTAAGCAAACCATTCCATTACCAGTGTTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTAGATACTAAGCAAACCATTCCATTACCAGTGTTTAAGT  50

seq1  CTCTGTGGGACTTTAAATTTTTCTCCCTTGAAGCTAAATTCATGTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGACTTTAAATTTTTCTCCCTTGAAGCTAAATTCATGTTTTTA  100

seq1  AAGTTTGGCTTACATTTTATTTTGAAAAGATGCAGTAAACACAATGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGCTTACATTTTATTTTGAAAAGATGCAGTAAACACAATGAAGT  150

seq1  TTTTACTGCTGTATAAAACCGAAAGGTTATGGAAAACACCCTGTGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCTGTATAAAACCGAAAGGTTATGGAAAACACCCTGTGTTCCA  200

seq1  CCATTTGATATGGTATTTGATTGTAGCGGGTGGGGGGGGGGGGCGCGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGATATGGTATTTGATTGTAGCGGGTGGGGGGGGGGGGCGCGACA  250

seq1  ATGTGTCTTTAAATAGAAACTCTTGGGTTTCCTCATGCACCAAATTCAAT  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTGTCTTTAAATAGAAACTCTTGGGTTTCCTCATGAACCAAATTCAAT  300

seq1  CATTTGTTCACCTGCTCATCACATTTTGTTCTACATTTGCCATGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCACCTGCTCATCACATTTTGTTCTACATTTGCCATGCACTGG  350

seq1  ACTCATCTTACAAAACTAAATAAACTCTTAAAATTATGGACTACAGCATG  400
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  ACTCATCTTACAAAACTAAATAAACTCTGAAAATTATGGACTACAGCATT  400

seq1  AAAACCTATTCCCTGGTGG  419
      |||||||||||||||||||
seq2  AAAACCTATTCCCTGGTGG  419


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