BAC Information

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BAC

Clone NameB6Ng01-186B01
Chromosome6 (Build37)
Map Location 45,277,999 - 45,422,206
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186B01.bB6Ng01-186B01.g
ACCGA011010GA011011
length1,0511,101
definitionB6Ng01-186B01.b B6Ng01-186B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,277,999 - 45,279,051)(45,421,104 - 45,422,206)
sequence
gaattctttactatgtctgctcatatttaactaccctaaggcactttaat
tcttgtccatcctttattccagcaaaactgtcttagcccaaaagatatat
ctgtacagagctctctacactgtcaaagaggaaagctatgctgggaagct
tgggggatgggctgtcagttttctacttgaattatcgttatttcactaac
cagttatctttttcacatccattgtgactagagaatgagatgtggcagca
atctttgtgcaatgccatttgtacactaaatttatgctgtagatttgcat
gctaagtacctctccagctagaggaactctcagcgacagcatgtttatgc
caccatttgggtttaaattggaattctaaagcagaccgaagtcaaacatg
gagatgcttctaggtgcttagcttaagtcaagcatggactctagtttgct
ccataggactacttcctgtgtgaggttttgtcagttcttttttttttttt
ttcaggcattatcaaaatctgtagctatatttttccattgttttaaaatt
gtgtggtcaaaagacatttacatttgattgaaatgatgtgatttataatt
taagaggaaccacaaaagtttaatgtaaattttgtataattcctcacaca
ctcatcttcatattttaaaaaagaaaacattgactatgtgaaaggcctgt
ttcacaggaaagaaaaacaaaaaccattataaccttcaatgagtctcaga
gtttggagcctgatctctcttcagtgattatagatcagagtcttattgct
ctgagtttgtagggttttaactcactcttcataaaatcgccaagttgcaa
tttgcagcctcaactgccttaaaatcatttaataataacaagggagtttc
ttagaaatggtacaactaaattataaataatttgagtaggccaaagaaag
gaagaaaaaaggtattcacttattatcctttaccagcctagcttggcctc
acataattattactacatcttgtagatttgttttagaaattttatatatg
t

gaattcacttcattaagttttctgttacttgcagctgaaggcatctttct
gatagttttactatgtgccatacaatcgattattgctgtgtaccttaatt
cctagttcaacctaatgaggttgattatccacttcattattcacatttta
gtgataaacaaactgaagctttagacattaaattagagcatcagagtaac
gctgaaggacattctggttaagtgtcttcatctcctcaacactatagcct
gtgagattaaactggtttactctgtaaactcagggagacgtatctaacag
attctttgaatgcgttcgtatcagtatttttcatggttactttaacattt
gctttactaaatgaatgtggaatattggcaacaaggacttggattaacaa
taaatgataaatttagctggataatccatatatagatatataatattcat
gttctgtctacaaagaaattggcatttaaatatactcacaaacatgcaca
cgcacacacacacacaaacacaacagtctcaatctcaaattgtcattgaa
aagtagttcccttgtaccaggatattatgaaattttgcatagatttagct
catgatatctggaggagatttgtctaaatttaattcctaaggtttttgcc
ttgtataaccgaagcagtcatgagcaacactgatgggaagaagccattca
aaagcaatgaaataagaaactaaggctttattgcattagtctcttctcaa
taatagaatattatggtacaaaaatgcccccagattatacttggcacctt
aatatttatgagaactgaaaacaattatttgatcttcagctatttttata
acatattcatgttcaatcagtttctctcatttctcttttaaaaattacta
cagcccaagtgttgaacactattccaactgttttctgactcacctttcct
ctgggaattgtattactttactctgacatagttttcttcctgccactgat
ctcatacagctttgccctctatctacctgcaaacaacatctctactttac
cacagcatgctttggaaacagtttcaattatgacaacggattaattgtcc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45277999_45279051
seq2: B6Ng01-186B01.b_44_1094

seq1  GAATTCTTTACTATGTCTGCTCATATTTAACTACCCTAAGGCACTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTATGTCTGCTCATATTTAACTACCCTAAGGCACTTTAAT  50

seq1  TCTTGTCCATCCTTTATTCCAGCAAAACTGTCTTAGCCCAAAAGATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCATCCTTTATTCCAGCAAAACTGTCTTAGCCCAAAAGATATAT  100

seq1  CTGTACAGAGCTCTCTACACTGTCAAAGAGGAAAGCTATGCTGGGAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGAGCTCTCTACACTGTCAAAGAGGAAAGCTATGCTGGGAAGCT  150

seq1  TGGGGGATGGGCTGTCAGTTTTCTACTTGAATTATCGTTATTTCACTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATGGGCTGTCAGTTTTCTACTTGAATTATCGTTATTTCACTAAC  200

seq1  CAGTTATCTTTTTCACATCCATTGTGACTAGAGAATGAGATGTGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCTTTTTCACATCCATTGTGACTAGAGAATGAGATGTGGCAGCA  250

seq1  ATCTTTGTGCAATGCCATTTGTACACTAAATTTATGCTGTAGATTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGCAATGCCATTTGTACACTAAATTTATGCTGTAGATTTGCAT  300

seq1  GCTAAGTACCTCTCCAGCTAGAGGAACTCTCAGCGACAGCATGTTTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTACCTCTCCAGCTAGAGGAACTCTCAGCGACAGCATGTTTATGC  350

seq1  CACCATTTGGGTTTAAATTGGAATTCTAAAGCAGACCGAAGTCAAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGGGTTTAAATTGGAATTCTAAAGCAGACCGAAGTCAAACATG  400

seq1  GAGATGCTTCTAGGTGCTTAGCTTAAGTCAAGCATGGACTCTAGTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTCTAGGTGCTTAGCTTAAGTCAAGCATGGACTCTAGTTTGCT  450

seq1  CCATAGGACTACTTCCTGTGTGAGGTTTTGTCAGTTCTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGACTACTTCCTGTGTGAGGTTTTGTCAGTTCTTTTTTTTTTTTT  500

seq1  TTCAGGCATTATCAAAATCTGTAGCTATATTTTTCCATTGTTTTAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATTATCAAAATCTGTAGCTATATTTTTCCATTGTTTTAAAATT  550

seq1  GTGTGGTCAAAAGACATTTACATTTGATTGAAATGATGTGATTTATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCAAAAGACATTTACATTTGATTGAAATGATGTGATTTATAATT  600

seq1  TAAGAGGAACCACAAAAGTTTAATGTAAATTTTGTATAATTCCTCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAACCACAAAAGTTTAATGTAAATTTTGTATAATTCCTCACACA  650

seq1  CTCATCTTCATATTTTAAAAAAGAAAACATTGACTATGTGAAAGGCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTCATATTTTAAAAAAGAAAACATTGACTATGTGAAAGGCCTGT  700

seq1  TTCACAGGAAAGAAAAACAAAAACCATTATAACCTTCAATGAGTCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGAAAGAAAAACAAAAACCATTATAACCTTCAATGAGTCTCAGA  750

seq1  GTTTGGAGCCTGATCTCTCTTCAGTGATTATAGATCAGAGTCTTATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGCCTGATCTCTCTTCAGTGATTATAGATCAGAGTCTTATTGCT  800

seq1  CTGAGTTTGTAGGGTTTTAACTCACTCTTCATAAAATCGCCAAGTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGTAGGGTTTTAACTCACTCTTCATAAAATCGCCAAGTTGCAA  850

seq1  TTTGCAGCCTCAACTGCCTTAAAATCATTTAAATAATAACAAAGGAAGTT  900
      |||||||||||||||||||||||||||||| ||||||||| |||| ||||
seq2  TTTGCAGCCTCAACTGCCTTAAAATCATTT-AATAATAAC-AAGGGAGTT  898

seq1  TC-TAGAAAATGTACAAACTAAAATATAAATATTTTGAGTAGG-CAAAGA  948
      || ||||||  |||| ||||||| |||||||| |||||||||| ||||||
seq2  TCTTAGAAATGGTAC-AACTAAATTATAAATAATTTGAGTAGGCCAAAGA  947

seq1  AAGAAAGAAAAAA-GTATTCACTTATAATCCTTTACAAG-CTAGCTTGCC  996
      ||| ||||||||| |||||||||||| ||||||||| || |||||||| |
seq2  AAGGAAGAAAAAAGGTATTCACTTATTATCCTTTACCAGCCTAGCTTGGC  997

seq1  CTCACCATAAATTATTACTAACATC-TGTAGATTTTGTTTTAGAAATTTT  1045
      |||| ||| |||||||||| ||||| |||||| |||||||||||||||||
seq2  CTCA-CAT-AATTATTACT-ACATCTTGTAGA-TTTGTTTTAGAAATTTT  1043

seq1  ATATATGT  1053
      ||||||||
seq2  ATATATGT  1051


seq1: chr6_45421104_45422206
seq2: B6Ng01-186B01.g_62_1162 (reverse)

seq1  TGGACAATTAAATCTGTTGGTCATAA-TGAAACTGTTTCCAAAGCATGCT  49
      ||||||||| |||| ||| ||||||| |||||||||||||||||||||||
seq2  TGGACAATT-AATCCGTT-GTCATAATTGAAACTGTTTCCAAAGCATGCT  48

seq1  GTGGTAAAGTAGAGATGTTTGTTTGCAGTTAGATAGAGGGCAAAGCTGTA  99
      ||||||||||||||||| |||||||||| |||||||||||||||||||| 
seq2  GTGGTAAAGTAGAGATG-TTGTTTGCAGGTAGATAGAGGGCAAAGCTGT-  96

seq1  ATGAGATCAGTTGCAGGAAGAAAACTATGTCAGAGTAAAAGTAATAC-AT  148
      ||||||||||| |||||||||||||||||||||||| |||||||||| ||
seq2  ATGAGATCAGTGGCAGGAAGAAAACTATGTCAGAGT-AAAGTAATACAAT  145

seq1  TCCCAGAGGAAAGGTGAGTCAGAAAACAGTTGGAATAGTGTTCAACACTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGAAAGGTGAGTCAGAAAACAGTTGGAATAGTGTTCAACACTT  195

seq1  -GGCTGTAGTAATTTTTAAAAGAGAAATGAGAGAAACTGATTGAACATGA  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAGTAATTTTTAAAAGAGAAATGAGAGAAACTGATTGAACATGA  245

seq1  ATATGTTATAAAAATAGCTGAAGATCAAATAATTGTTTTCAGTTCTCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATAAAAATAGCTGAAGATCAAATAATTGTTTTCAGTTCTCATA  295

seq1  AATATTAAGGTGCCAAGTATAATCTGGGGGCATTTTTGTACCATAATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGGTGCCAAGTATAATCTGGGGGCATTTTTGTACCATAATATT  345

seq1  CTATTATTGAGAAGAGACTAATGCAATAAAGCCTTAGTTTCTTATTTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTGAGAAGAGACTAATGCAATAAAGCCTTAGTTTCTTATTTCAT  395

seq1  TGCTTTTGAATGGCTTCTTCCCATCAGTGTTGCTCATGACTGCTTCGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGAATGGCTTCTTCCCATCAGTGTTGCTCATGACTGCTTCGGTT  445

seq1  ATACAAGGCAAAAACCTTAGGAATTAAATTTAGACAAATCTCCTCCAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGCAAAAACCTTAGGAATTAAATTTAGACAAATCTCCTCCAGAT  495

seq1  ATCATGAGCTAAATCTATGCAAAATTTCATAATATCCTGGTACAAGGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGCTAAATCTATGCAAAATTTCATAATATCCTGGTACAAGGGAA  545

seq1  CTACTTTTCAATGACAATTTGAGATTGAGACTGTTGTGTTTGTGTGTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCAATGACAATTTGAGATTGAGACTGTTGTGTTTGTGTGTGTG  595

seq1  TGTGCGTGTGCATGTTTGTGAGTATATTTAAATGCCAATTTCTTTGTAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTGCATGTTTGTGAGTATATTTAAATGCCAATTTCTTTGTAGA  645

seq1  CAGAACATGAATATTATATATCTATATATGGATTATCCAGCTAAATTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATGAATATTATATATCTATATATGGATTATCCAGCTAAATTTAT  695

seq1  CATTTATTGTTAATCCAAGTCCTTGTTGCCAATATTCCACATTCATTTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTGTTAATCCAAGTCCTTGTTGCCAATATTCCACATTCATTTAG  745

seq1  TAAAGCAAATGTTAAAGTAACCATGAAAAATACTGATACGAACGCATTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAATGTTAAAGTAACCATGAAAAATACTGATACGAACGCATTCA  795

seq1  AAGAATCTGTTAGATACGTCTCCCTGAGTTTACAGAGTAAACCAGTTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTGTTAGATACGTCTCCCTGAGTTTACAGAGTAAACCAGTTTAA  845

seq1  TCTCACAGGCTATAGTGTTGAGGAGATGAAGACACTTAACCAGAATGTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGCTATAGTGTTGAGGAGATGAAGACACTTAACCAGAATGTCC  895

seq1  TTCAGCGTTACTCTGATGCTCTAATTTAATGTCTAAAGCTTCAGTTTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGTTACTCTGATGCTCTAATTTAATGTCTAAAGCTTCAGTTTGTT  945

seq1  TATCACTAAAATGTGAATAATGAAGTGGATAATCAACCTCATTAGGTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTAAAATGTGAATAATGAAGTGGATAATCAACCTCATTAGGTTGA  995

seq1  ACTAGGAATTAAGGTACACAGCAATAATCGATTGTATGGCACATAGTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAATTAAGGTACACAGCAATAATCGATTGTATGGCACATAGTAAA  1045

seq1  ACTATCAGAAAGATGCCTTCAGCTGCAAGTAACAGAAAACTTAATGAAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAGAAAGATGCCTTCAGCTGCAAGTAACAGAAAACTTAATGAAGT  1095

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1101


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