BAC Information

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BAC

Clone NameB6Ng01-186J20
Chromosome6 (Build37)
Map Location 110,783,068 - 110,871,600
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186J20.bB6Ng01-186J20.g
ACCGA011407GA011408
length1,085775
definitionB6Ng01-186J20.b B6Ng01-186J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,870,537 - 110,871,600)(110,783,068 - 110,783,836)
sequence
gaattcctttggtttttttccctgaaagagaagataaggaaggataattc
ttccttctattcttagtaaaacttagtaaatgatgacttcatgccctcta
cacactaggacttaagctagatgtcaggcacatgggtttgactttgccct
gatcatcagaaatacaaccaacacccagagtgcttcatctaggaagcaat
aagagggcagtgctataaatcgcataatgaggagagggagagaagggggg
agctctgtttggaaagtactttctattcaagcactaggacctgagatgta
ttctcaggatctacgtgaaaagtgaacatggtggcaagggcttgcaatcc
tagcaatgaagagggaggagacacaggaggaagccagggcccattgatca
gaaaaatcttcaggtcctagtggaaaaaaaaaacatatctcaaaacaatg
tggattgctccccaagaaacacacacacacacacacacacacacacacac
acacacacacacacacaccacacatccacacacccacacacccacacacc
tacatacacagttagatgagctacccactaccgagacataaatcagtgta
taaaaaagccattccacattcccaaggtctaaattcctgaagactaagca
gctgataagttcagtctctagctcttcacttatgacatcaagaagagcat
tacagagaatacacagaatgtaaaaagagtcaaagatttcatatttgcta
attatacttaaagcatttctcctcctttctgtcctctcaacaatcgtccc
gtttgtcttctccctccatgctatcataaacattaactttgggttttcac
tgaggaaattgagtctttaaacgtaacctcagccatttagtttaccacat
ttggcttggattttcttttttattcttaccataatggggaattgaattta
atcctcgtcctctgtaaatattaggcaaaatccaacccaatcaatctaac
taatatatgaaactccaaaccagcaaaccagcctttttggttgaccaccg
tcatgagtaaacactatcacggggccgttttacac

gaattcatagttctgagcactgcatatatttcattacagctgctagacct
ctctttttagtttcaagtgtcaaaatcgcaatctaaaccacctcagagaa
aatgaaaatatattaaatcatatacctggaaggcccaagggtttcactaa
cttcaggcatttctcgagccacaactaaaaaatagtttttatataactat
cttttactttatcacttagttctaatttttttctcaacgagcttcacatt
gaatgtataattccactataaggcataaagttgctcattattagattaca
gcttgttctcactgtgttgtgatatatatcataataaaatatctggtagc
aagaaatgacatagtcagaaaaatgattaagaatttatttaaaatttcaa
atacttaaaaaataaaaacaattaaaatgtccattttctatttcctattt
ctccctcctaactcttcatagtttcctcaactatatgccctctcttttta
ctaattagtactgcatgtgtatatgtatatgagtatgtatatatgatata
tgtgatgaaaatacatatacatatatatcctaaatataactttgtttagt
ctatataatggtacatgtatgcatgtttttctgggtggactattttaaca
ccaaacaaaataattgctcttctcatccccaaggaaaggcaccatctctt
ccattccttgatttcttcagtgcctacattttcttttaagtcttgtgggg
attttctccttccattttagcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110870537_110871600
seq2: B6Ng01-186J20.b_48_1132 (reverse)

seq1  GTGTAAAACGGCCCTG---TAGTG-TTACTCATG-CGGT-GTCAAC---A  41
      |||||||||||||| |   ||||| ||||||||| |||| ||||||   |
seq2  GTGTAAAACGGCCCCGTGATAGTGTTTACTCATGACGGTGGTCAACCAAA  50

seq1  AAAGCTGTTTTGCTGTTTTGGGTTTTC--TTTTTTGTTTGTTTG-TTTGG  88
      || |||| ||||||| |||||  ||||   | || ||| | ||| || ||
seq2  AAGGCTGGTTTGCTGGTTTGGAGTTTCATATATTAGTTAGATTGATTGGG  100

seq1  TTGG-TTTTGCCTAATATTT-CAGAGAACGA-GATAAAATTCA--TTCCC  133
      |||| ||||||||||||||| ||||| |||| ||| |||||||  | |||
seq2  TTGGATTTTGCCTAATATTTACAGAGGACGAGGATTAAATTCAATTCCCC  150

seq1  ATTATGGTAAGAATAAAAAAGAAAATCCAAGCC-AATGTGGTAAACTAAA  182
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTATGGTAAGAATAAAAAAGAAAATCCAAGCCAAATGTGGTAAACTAAA  200

seq1  TGGCTGAGGTTACGTTTAAAGACTCAATTTCCTCAGTGAAAA-CCAAAGT  231
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCTGAGGTTACGTTTAAAGACTCAATTTCCTCAGTGAAAACCCAAAGT  250

seq1  TAATG-TTATGATAGCATGGAGGGAGAAGAC-AACGGGACGATTGTTGAG  279
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATGTTTATGATAGCATGGAGGGAGAAGACAAACGGGACGATTGTTGAG  300

seq1  AGGACAGAAAGGAGGAGAAATGCTTTAAGTATAATTAGCAAATATGAAAT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAAAGGAGGAGAAATGCTTTAAGTATAATTAGCAAATATGAAAT  350

seq1  CTTTGACTCTTTTTACATTCTGTGTATTCTCTGTAATGCTCTTCTTGATG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTCTTTTTACATTCTGTGTATTCTCTGTAATGCTCTTCTTGATG  400

seq1  TCATAAGTGAAGAGCTAGAGACTGAACTTATCAGCTGCTTAGTCTTCAGG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTGAAGAGCTAGAGACTGAACTTATCAGCTGCTTAGTCTTCAGG  450

seq1  AATTTAGACCTTGGGAATGTGGAATGGCTTTTTTATACACTGATTTATGT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGACCTTGGGAATGTGGAATGGCTTTTTTATACACTGATTTATGT  500

seq1  CTCGGTAGTGGGTAGCTCATCTAACTGTGTATGTAGGTGTGTGGGTGTGT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAGTGGGTAGCTCATCTAACTGTGTATGTAGGTGTGTGGGTGTGT  550

seq1  GGGTGTGTGGATGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGGATGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  600

seq1  TGTGTGTGTGTGTGTGTTTCTTGGGGAGCAATCCACATTGTTTTGAGATA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTTTCTTGGGGAGCAATCCACATTGTTTTGAGATA  650

seq1  TGTTTTTTTTTTCCACTAGGACCTGAAGATTTTTCTGATCAATGGGCCCT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTCCACTAGGACCTGAAGATTTTTCTGATCAATGGGCCCT  700

seq1  GGCTTCCTCCTGTGTCTCCTCCCTCTTCATTGCTAGGATTGCAAGCCCTT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTCCTGTGTCTCCTCCCTCTTCATTGCTAGGATTGCAAGCCCTT  750

seq1  GCCACCATGTTCACTTTTCACGTAGATCCTGAGAATACATCTCAGGTCCT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTTCACTTTTCACGTAGATCCTGAGAATACATCTCAGGTCCT  800

seq1  AGTGCTTGAATAGAAAGTACTTTCCAAACAGAGCTCCCCCCTTCTCTCCC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGAATAGAAAGTACTTTCCAAACAGAGCTCCCCCCTTCTCTCCC  850

seq1  TCTCCTCATTATGCGATTTATAGCACTGCCCTCTTATTGCTTCCTAGATG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATTATGCGATTTATAGCACTGCCCTCTTATTGCTTCCTAGATG  900

seq1  AAGCACTCTGGGTGTTGGTTGTATTTCTGATGATCAGGGCAAAGTCAAAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGGGTGTTGGTTGTATTTCTGATGATCAGGGCAAAGTCAAAC  950

seq1  CCATGTGCCTGACATCTAGCTTAAGTCCTAGTGTGTAGAGGGCATGAAGT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCCTGACATCTAGCTTAAGTCCTAGTGTGTAGAGGGCATGAAGT  1000

seq1  CATCATTTACTAAGTTTTACTAAGAATAGAAGGAAGAATTATCCTTCCTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTACTAAGTTTTACTAAGAATAGAAGGAAGAATTATCCTTCCTT  1050

seq1  ATCTTCTCTTTCAGGGAAAAAAACCAAAGGAATTC  1064
      |||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTTTCAGGGAAAAAAACCAAAGGAATTC  1085


seq1: chr6_110783068_110783836
seq2: B6Ng01-186J20.g_64_838

seq1  GAATTCATAGTTCTGAGCACTGCATATATTTCATTACAGCTGCTAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTCTGAGCACTGCATATATTTCATTACAGCTGCTAGACCT  50

seq1  CTCTTTTTAGTTTCAAGTGTCAAAATCGCAATCTAAACCACCTCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAGTTTCAAGTGTCAAAATCGCAATCTAAACCACCTCAGAGAA  100

seq1  AATGAAAATATATTAAATCATATACCTGGAAGGCCCAAGGGTTTCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATATATTAAATCATATACCTGGAAGGCCCAAGGGTTTCACTAA  150

seq1  CTTCAGGCATTTCTCGAGCCACAACTAAAAAATAGTTTTTATATAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCATTTCTCGAGCCACAACTAAAAAATAGTTTTTATATAACTAT  200

seq1  CTTTTACTTTATCACTTAGTTCTAATTTTTTTCTCAACGAGCTTCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTTATCACTTAGTTCTAATTTTTTTCTCAACGAGCTTCACATT  250

seq1  GAATGTATAATTCCACTATAAGGCATAAAGTTGCTCATTATTAGATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATAATTCCACTATAAGGCATAAAGTTGCTCATTATTAGATTACA  300

seq1  GCTTGTTCTCACTGTGTTGTGATATATATCATAATAAAATATCTGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCTCACTGTGTTGTGATATATATCATAATAAAATATCTGGTAGC  350

seq1  AAGAAATGACATAGTCAGAAAAATGATTAAGAATTTATTTAAAATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGACATAGTCAGAAAAATGATTAAGAATTTATTTAAAATTTCAA  400

seq1  ATACTTAAAAAATAAAAACAATTAAAATGTCCATTTTCTATTTCCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAAAATAAAAACAATTAAAATGTCCATTTTCTATTTCCTATTT  450

seq1  CTCCCTCCTAACTCTTCATAGTTTCCTCAACTATATGCCCTCTCTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTAACTCTTCATAGTTTCCTCAACTATATGCCCTCTCTTTTTA  500

seq1  CTAATTAGTACTGCATGTGTATATGTATATGAGTATGTATATATGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGTACTGCATGTGTATATGTATATGAGTATGTATATATGATATA  550

seq1  TGTGATGAAAATACATATACATATATATCCTAAATATAAC-TTGTTTAGT  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGATGAAAATACATATACATATATATCCTAAATATAACTTTGTTTAGT  600

seq1  CTATATAATGGTACATGTATGCATG-TTTTCTGGGTGGACTA-TTTAACA  647
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  CTATATAATGGTACATGTATGCATGTTTTTCTGGGTGGACTATTTTAACA  650

seq1  CCAAAC-AAATAATTGCTCTTCTCATCCCCAAGGAAAGGCACCATCTCTT  696
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAATAATTGCTCTTCTCATCCCCAAGGAAAGGCACCATCTCTT  700

seq1  CCATTCCTTGATTTCTTCAGTGCCTACA-TTTCTTTTAAGTCTTGT-GGG  744
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CCATTCCTTGATTTCTTCAGTGCCTACATTTTCTTTTAAGTCTTGTGGGG  750

seq1  ATTTTCTCCTTCCATTTTAGCATGC  769
      |||||||||||||||||||||||||
seq2  ATTTTCTCCTTCCATTTTAGCATGC  775


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