BAC Information

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BAC

Clone NameB6Ng01-188E19
Chromosome6 (Build37)
Map Location 86,103,901 - 86,105,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Downstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E19.bB6Ng01-188E19.g
ACCGA012634GA012635
length1,1351,159
definitionB6Ng01-188E19.b B6Ng01-188E19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcccttctttccacagtaattacagctctcaaaccatgtatg
cctgctactggtgtttgcaaacaagttgctcacagaatgagttccatatt
aaaatcattccctctgcaccattcccaagatgttctctccttgctgtctt
ttgccaagggcagacttgtattctgactcccatgtcacccgtgggaacgt
gggtgaggctgacgcatcaatcccatggagaaagctgcagagtccacgga
tccaggctccactgaatgctcagacccgactgacagccctgcagcttgct
caccatcagcctttctccagggtccccacccccttctcttcaactcaaca
ctgagctctacccaggagaggccagaggccagtagccagccaacagaggc
ctgaaaaccttcctaatgtgagacactggtcttcacttcatagtaagagc
actgggacttagcaaaagcaaaggagtttgtttcatagccaagcaaagct
gggtgtcagcctaggggaaaggcaagagtggttggcaccctgatctggat
ggagccttgtggtgttttgtttgtttacagctttttatagtttctagtca
tgtttccacgtcccctgaattcctcactgtctgagctcttcagtgaggtt
ccatcttccttatctccagaaaattcctcctcctccatctgggactcaag
atcccctcttctgatagaaggactcagtggcagactgcctgtaacttatc
aaccctaggatgacctgagaacactgagacaaacagacactggctcccag
ccaggaaagacagaaagacacagcctcctgcttgtctgtggtcctctgat
gagctctgagcttacttcatatggaaagtggtccatcgtgatatatttgt
gaactactccctacctgaagatgggcccctgcccctcatttcactagttc
tccaggcctgaggactaagaggctgcgcttgtgggaagtccctcccttgt
gatccacactgaccatggctctgcagtcagctctatactttctatacttt
catatcttcaaactgtctctccatagtcttcccttcatcatagctacaaa
gtctctctcaaccccgaacaagtacattgggagct
gaattcctttatttattacttaaggcctggcctgtgagagtaatggattt
aatggctagtcatggactgcatgagcaggagagagaaaaatttgctttca
ccgtgcacacttataataatgctcaacttataaaaaggtgtcagcggaaa
gctcctccacagagaatgttaaacagtccgatgttatgtcagtattttgt
gcaacaaccactagaaataatctgtaggtgatttccttagcaattattta
tcattatatgtcaggaaaccttactgctaaggtagaagtttgagattgcc
agaaagccctgagcttgggacaaaatggcagactccctttgtcagtgagg
cttcctcttctctgcctgagggatctcgaactccacacccctacctgttc
agcaagcacctgagattctccaaatgcctccccatgctaatgaggtatcg
cagtaccttagccttcagccaatgatatgtacccaccatagaaaccctta
gccgcctccctaaaaacgatataacccctgattcaccccgaataaggctg
agctgtgtctctgaagctgatccggtagctattttgttatactcacgggc
tatctgaagccctgttctttgactgcagtagctcatgctcctgagtccag
cactctcagcaccaagtgtctcatgtgcatcttataattttataaattta
attttaatcttcatcacttatgcagtttttcccattttatgaacagggga
attgaggtacagcggcagagctgggatttgaaactgactttctctgattt
ccagagcttatgctggtactaaaactctttactaagtaaataccaccatg
ataatggtagtggaggggagaggccttagccctggcatattccgggggag
gtacacataacccggacatggtggctacttagtaatgaggaagatgtgtc
ctggtgggtgtcttgccttctcaaggtcccacaattggtgaagagaaaca
gcccaaggtgcatgccagttcctctgtgtccacagtcgtcttcagagccc
ctggaagaggctgtgacaggcatttctggaagtgtgtgctacatagacag
ctgttttataaggatccagccatgtcctggctagacagcctgcccatctg
cctctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86103901_86105047
seq2: B6Ng01-188E19.b_47_1181

seq1  GAATTCCTTCCCTTCTTTCCACAGTAATTACAGCTCTCAAACCATGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTTCTTTCCACAGTAATTACAGCTCTCAAACCATGTATG  50

seq1  CCTGCTACTGGTGTTTGCAAACAAGTTGCTCACAGAATGAGTTCCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACTGGTGTTTGCAAACAAGTTGCTCACAGAATGAGTTCCATATT  100

seq1  AAAATCATTCCCTCTGCACCATTCCCAAGATGTTCTCTCCTTGCTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTCCCTCTGCACCATTCCCAAGATGTTCTCTCCTTGCTGTCTT  150

seq1  TTGCCAAGGGCAGACTTGTATTCTGACTCCCATGTCACCCGTGGGAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGGGCAGACTTGTATTCTGACTCCCATGTCACCCGTGGGAACGT  200

seq1  GGGTGAGGCTGACGCATCAATCCCATGGAGAAAGCTGCAGAGTCCACGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGCTGACGCATCAATCCCATGGAGAAAGCTGCAGAGTCCACGGA  250

seq1  TCCAGGCTCCACTGAATGCTCAGACCCGACTGACAGCCCTGCAGCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCCACTGAATGCTCAGACCCGACTGACAGCCCTGCAGCTTGCT  300

seq1  CACCATCAGCCTTTCTCCAGGGTCCCCACCCCCTTCTCTTCAACTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGCCTTTCTCCAGGGTCCCCACCCCCTTCTCTTCAACTCAACA  350

seq1  CTGAGCTCTACCCAGGAGAGGCCAGAGGCCAGTAGCCAGCCAACAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTACCCAGGAGAGGCCAGAGGCCAGTAGCCAGCCAACAGAGGC  400

seq1  CTGAAAACCTTCCTAATGTGAGACACTGGTCTTCACTTCATAGTAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACCTTCCTAATGTGAGACACTGGTCTTCACTTCATAGTAAGAGC  450

seq1  ACTGGGACTTAGCAAAAGCAAAGGAGTTTGTTTCATAGCCAAGCAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACTTAGCAAAAGCAAAGGAGTTTGTTTCATAGCCAAGCAAAGCT  500

seq1  GGGTGTCAGCCTAGGGGAAAGGCAAGAGTGGTTGGCACCCTGATCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCAGCCTAGGGGAAAGGCAAGAGTGGTTGGCACCCTGATCTGGAT  550

seq1  GGAGCCTTGTGGTGTTTTGTTTGTTTACAGCTTTTTATAGTTTCTAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTGTGGTGTTTTGTTTGTTTACAGCTTTTTATAGTTTCTAGTCA  600

seq1  TGTTTCCACGTCCCCTGAATTCCTCACTGTCTGAGCTCTTCAGTGAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCACGTCCCCTGAATTCCTCACTGTCTGAGCTCTTCAGTGAGGTT  650

seq1  CCATCTTCCTTATCTCCAGAAAATTCCTCCTCCTCCATCTGGGACTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCTTATCTCCAGAAAATTCCTCCTCCTCCATCTGGGACTCAAG  700

seq1  ATCCCCTCTTCTGATAGAAGGACTCAGTGGCAGACTGCCTGTAACTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTTCTGATAGAAGGACTCAGTGGCAGACTGCCTGTAACTTATC  750

seq1  AACCCTAGGATGACCTGAGAACACTGAGACAAACAGACACTGGCTCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGGATGACCTGAGAACACTGAGACAAACAGACACTGGCTCCCAG  800

seq1  CCAGGAAAGACAGAAAGACACAGCCTCCTGCTTGTCTGTGGTCCTCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGACAGAAAGACACAGCCTCCTGCTTGTCTGTGGTCCTCTGAT  850

seq1  GAGCTCTGAGCTTACTTCATATGGAAAGTGGTCCATCGTGATATATTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGAGCTTACTTCATATGGAAAGTGGTCCATCGTGATATATTTGT  900

seq1  GAACTACTCCCTACCTGAAGATGGGCCCCTGCCCCTCATTTCACTAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTCCCTACCTGAAGATGGGCCCCTGCCCCTCATTTCACTAGTTC  950

seq1  TCCAAGCCTGGAGGACTAAGAGGCTGCGCTTGTGGGGAAGTCCCTCCCTT  1000
      |||| |||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGGCCT-GAGGACTAAGAGGCTGCGCTTGT-GGGAAGTCCCTCCCTT  998

seq1  GTGATCCACACTGACCATGGCTCTGCAGTCAGCTCCTATACTTTCTTATA  1050
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GTGATCCACACTGACCATGGCTCTGCAGTCAGCT-CTATACTTTC-TATA  1046

seq1  CCTTCCATATCTTCAAACTGTCTCTCCCATTAGGTTCTTTCCCTTCATCA  1100
       ||| ||||||||||||||||||||||   |||  || ||||||||||||
seq2  -CTTTCATATCTTCAAACTGTCTCTCC--ATAG--TC-TTCCCTTCATCA  1090

seq1  TAGCATACCAAAGTCTCTC-AAACCCCAAACAAGTACAAATGGGAGCT  1147
      |||| || |||||||||||  |||||| ||||||||| | ||||||||
seq2  TAGC-TA-CAAAGTCTCTCTCAACCCCGAACAAGTAC-ATTGGGAGCT  1135