BAC Information

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BAC

Clone NameB6Ng01-189J09
Chromosome6 (Build37)
Map Location 51,657,878 - 51,838,146
singlet/doubletdoublet
Overlap geneSkap2
Upstream geneLOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
Downstream geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189J09.bB6Ng01-189J09.g
ACCGA013570GA013571
length879696
definitionB6Ng01-189J09.b B6Ng01-189J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,657,878 - 51,658,741)(51,837,454 - 51,838,146)
sequence
gaattctgcagtaatttagcaatcattaatgtccacttattgtaaagtgg
tacagaatacactttattgcctgcaaattgccaaagtgatttcccccttg
tgtgtgtatgtgtgtcatgtgtgccatttaatgaggtccttgtgaactca
ggaaccctagtaaatatgaacgtcccataaagtcccaggctgtaaatcaa
gcaactattgcgaatggccttaccaaggaaaggtcaactgtgcttggtcc
caccaaaggactttcatcttttgcagtgtccaaggacatcccagcaggtt
gttccagcagcctcttacggagggtttcttcagccacgggtgtcatctga
gctcagctgggagtcccggatcccctctgtgggtcatttgttgcatttct
atctcatctcccctccctgccccgttcatgggaagtttcctttgtgatgc
tctggaatgctaagtgaaccatccctatttgaacccacccacttagccac
tcagccccagtttgccacagttgcagctagatttaagatcaaaggcagag
gtaaaagtcagtgtagctgtggcaagcattaatctcttctgtcagttgtg
ttcactgttgctatatatataaaaccatgatgcatttcaaaagcttgata
tactattcatttttatgcaaatggggggagtttactctgctttcccgcta
cacatgaaaccaaagcatcctttcggggattttttgttttgttttgcttt
ttttacagaggttatctccttccctaaaaaacaatcccgaccagaaggaa
ggcaaagagcccacagcttcttctcttctcccctttcttaatgccatttt
tctctgtgatgtaactggagtgattttgc
gaattcctgggagattgcatgatttaaacagcaactaacaagagactctc
tcaaacaagttcgaaagaaccaacacccgaagttatcctttgacctccac
acaccaattcctacttacatgtactatcacacatacacacacaaacacac
acacacaggcacactcacaagcatgcacacccacacaaataaaaattaat
gcagaggggaagataaggcaataaatacttatactgtcacccttccttcg
tcggctaaaggctacaagtgaaagtaacattggaaatgagtgggcctgga
aggtacagggaattaacagggacactgttcaactttatccacaactttac
ttgtggagagggaaacggacaagagtaactgtcatcataatctgtgataa
ccagcaggaaggtgagtgttggttggatatattgttagacttcagaaggc
agatttcaaaacgtcaaagaaagaataggcaaaaaaaaaaaaaaaaaaaa
aatgtatgctattaaagcctgtattttaaactaccattcagattttaatt
gcaaaccatctcaatgaggtttcagggggatgaaaatccaccagtttcct
ttgtggtagaatacatttaatgagtgcagcttttgaagagacctatgaaa
atagctgaaatttcacagactatgatcagtatgataaaaattatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_51657878_51658741
seq2: B6Ng01-189J09.b_48_926

seq1  GAATTCTGCAGTAATTTAGCAATCATTAATGTCCACTTATTGTAAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTAATTTAGCAATCATTAATGTCCACTTATTGTAAAGTGG  50

seq1  TACAGAATACACTTTATTGCCTGCAAATTGCCAAAGTGATTTCCCCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATACACTTTATTGCCTGCAAATTGCCAAAGTGATTTCCCCCTTG  100

seq1  TGTGTGTATGTGTGTCATGTGTGCCATTTAATGAGGTCCTTGTGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTCATGTGTGCCATTTAATGAGGTCCTTGTGAACTCA  150

seq1  GGAACCCTAGTAAATATGAACGTCCCATAAAGTCCCAGGCTGTAAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTAGTAAATATGAACGTCCCATAAAGTCCCAGGCTGTAAATCAA  200

seq1  GCAACTATTGCGAATGGCCTTACCAAGGAAAGGTCAACTGTGCTTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTATTGCGAATGGCCTTACCAAGGAAAGGTCAACTGTGCTTGGTCC  250

seq1  CACCAAAGGACTTTCATCTTTTGCAGTGTCCAAGGACATCCCAGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGGACTTTCATCTTTTGCAGTGTCCAAGGACATCCCAGCAGGTT  300

seq1  GTTCCAGCAGCCTCTTACGGAGGGTTTCTTCAGCCACGGGTGTCATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCAGCCTCTTACGGAGGGTTTCTTCAGCCACGGGTGTCATCTGA  350

seq1  GCTCAGCTGGGAGTCCCGGATCCCCTCTGTGGGTCATTTGTTGCATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGGGAGTCCCGGATCCCCTCTGTGGGTCATTTGTTGCATTTCT  400

seq1  ATCTCATCTCCCCTCCCTGCCCCGTTCATGGGAAGTTTCCTTTGTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTCCCCTCCCTGCCCCGTTCATGGGAAGTTTCCTTTGTGATGC  450

seq1  TCTGGAATGCTAAGTGAACCATCCCTATTTGAACCCACCCACTTAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGCTAAGTGAACCATCCCTATTTGAACCCACCCACTTAGCCAC  500

seq1  TCAGCCCCAGTTTGCCACAGTTGCAGCTAGATTTAAGATCAAAGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCAGTTTGCCACAGTTGCAGCTAGATTTAAGATCAAAGGCAGAG  550

seq1  GTAAAAGTCAGTGTAGCTGTGGCAAGCATTAATCTCTTCTGTCAGTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTCAGTGTAGCTGTGGCAAGCATTAATCTCTTCTGTCAGTTGTG  600

seq1  TTCACTGTTGCTATATATATAAAACCATGATGCATTTCAAAAGCTTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTGCTATATATATAAAACCATGATGCATTTCAAAAGCTTGATA  650

seq1  TACTATTCATTTTTATGC-AATGGGGGGAGTTTACTCTGC-TTCCCGCTA  698
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TACTATTCATTTTTATGCAAATGGGGGGAGTTTACTCTGCTTTCCCGCTA  700

seq1  CACATG-AACCAAAGCATCCTTTCGGGGA-TTTTTGTTTTGTTTTGC-TT  745
      |||||| |||||||||||||||||||||| ||||||||||||||||| ||
seq2  CACATGAAACCAAAGCATCCTTTCGGGGATTTTTTGTTTTGTTTTGCTTT  750

seq1  TTTTACAGAGGTTATCTCCTTCC--TAAAAACAATCCCGACCAG-AGGAA  792
      |||||||||||||||||||||||   |||||||||||||||||| |||||
seq2  TTTTACAGAGGTTATCTCCTTCCCTAAAAAACAATCCCGACCAGAAGGAA  800

seq1  GGC-AAGAGCCCACAGC-TCTCCTC-TCTCCCCTT--CTAATGCCA-TTT  836
      ||| ||||||||||||| ||| ||| |||||||||   |||||||| |||
seq2  GGCAAAGAGCCCACAGCTTCTTCTCTTCTCCCCTTTCTTAATGCCATTTT  850

seq1  TCTCTGTGATGTAACT-GAGTGATTTTGC  864
      |||||||||||||||| ||||||||||||
seq2  TCTCTGTGATGTAACTGGAGTGATTTTGC  879

seq1: chr6_51837454_51838146
seq2: B6Ng01-189J09.g_68_763 (reverse)

seq1  ACATAATTTTTATCATACTGATCATAGTCTGTG-AATTTCAGCTATTTTC  49
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACATAATTTTTATCATACTGATCATAGTCTGTGAAATTTCAGCTATTTTC  50

seq1  ATAGGTCTCTTCAAAAGCTGCACTCATTAAATGTATTCTACCAC-AAGGA  98
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAGGTCTCTTCAAAAGCTGCACTCATTAAATGTATTCTACCACAAAGGA  100

seq1  AACTGGTGGATTTTCATCCCCCTGAAACCTCATTGAGATGGTTTGCAATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGGATTTTCATCCCCCTGAAACCTCATTGAGATGGTTTGCAATT  150

seq1  AAAATCTGAATGGTAGTTTAAAATACAGGCTTTAATAGCATACA-TTTTT  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAATCTGAATGGTAGTTTAAAATACAGGCTTTAATAGCATACATTTTTT  200

seq1  TTTTTTTTTTTTTTTTGCCTATTCTTTCTTTGACGTTTTGAAATCTGCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGCCTATTCTTTCTTTGACGTTTTGAAATCTGCCT  250

seq1  TCTGAAGTCTAACAATATATCCAACCAACACTCACCTTCCTGCTGGTTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCTAACAATATATCCAACCAACACTCACCTTCCTGCTGGTTAT  300

seq1  CACAGATTATGATGACAGTTACTCTTGTCCGTTTCCCTCTCCACAAGTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTATGATGACAGTTACTCTTGTCCGTTTCCCTCTCCACAAGTAA  350

seq1  AGTTGTGGATAAAGTTGAACAGTGTCCCTGTTAATTCCCTGTACCTTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGATAAAGTTGAACAGTGTCCCTGTTAATTCCCTGTACCTTCCA  400

seq1  GGCCCACTCATTTCCAATGTTACTTTCACTTGTAGCCTTTAGCCGACGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACTCATTTCCAATGTTACTTTCACTTGTAGCCTTTAGCCGACGAA  450

seq1  GGAAGGGTGACAGTATAAGTATTTATTGCCTTATCTTCCCCTCTGCATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTGACAGTATAAGTATTTATTGCCTTATCTTCCCCTCTGCATTA  500

seq1  ATTTTTATTTGTGTGGGTGTGCATGCTTGTGAGTGTGCCTGTGTGTGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTGTGTGGGTGTGCATGCTTGTGAGTGTGCCTGTGTGTGTGT  550

seq1  GTTTGTGTGTGTATGTGTGATAGTACATGTAAGTAGGAATTGGTGTGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTATGTGTGATAGTACATGTAAGTAGGAATTGGTGTGTGG  600

seq1  AGGTCAAAGGATAACTTCGGGTGTTGGTTCTTTCGAACTTGTTTGAGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGGATAACTTCGGGTGTTGGTTCTTTCGAACTTGTTTGAGAGA  650

seq1  GTCTCTTGTTAGTTGCTGTTTAAATCATGCAATCTCCCAGGAATTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTTAGTTGCTGTTTAAATCATGCAATCTCCCAGGAATTC  696