BAC Information

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BAC

Clone NameB6Ng01-194A06
Chromosome6 (Build37)
Map Location 33,671,618 - 33,799,670
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194A06.bB6Ng01-194A06.g
ACCGA016823GA016824
length1,1331,076
definitionB6Ng01-194A06.b B6Ng01-194A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,671,618 - 33,672,762)(33,798,581 - 33,799,670)
sequence
gaattcatcaatcctgactactagttatttgtcaaaatgctacattagga
aataaaatgtttctgcatatctaggtttcctaaaataaatgtaacctctg
agggtatgcaagcattctaggattcatactagttagatgcttgggcccct
gggcttacaaataagcaaatatccttccttggttttggaaaactgttgga
ttatttcagatcacacacatacacccatctttggggccttaagggcatta
acattaatggaagtgatgcaaaattcaattagaaattatctgatgctccc
tgcatgtcgatttcactctacaaggagcctcttctgcagaatctgcctga
acagatgagactcggcacaggcagggagaaagctgtcagaggagaaattt
caaataagggcagaaaaatgatcccaacatgggagccctcttcacagcat
tacccttagcagaagtagagcctagggcaagtcacattataatagaccta
aaatattttaaatgaatgccaaggaagactgctactttagattaaatgtt
cctaggactagagtaaataaccataattgaacatgcagagagactatagt
gatatcaaagtctgattgcattgtgtggactatacaggacaaaataaggt
tctggagacctatttcctggcttaaagggcatgacactaatggattctac
cctagtcacaagcctgaggcatgggagagaatcatgccagagtggaaaga
ctcaaatatcaagacagaccagggtttaaattcaagctgtgtccttcaat
tccctagtggctttcagcaaactactgtacttcatctttaaaatgagaat
aatgtgattgggccttgtggtacatgtctgtaatcccaacacttagaaga
ctaaaacaggagtaatgtagagtacatacaaataaacacaaaacacatac
atagaaagtgatatcagtctcatagaggttctaggaagactagagtgaag
ctcatatcattctgatggtacttgaatatcatagcatcagcaaagtattt
ttatttatttacttattatgtatatgctgtttactacatggtgtgtctga
aatatatatatatgatgttatataatatatata

gaattccttgatgaatgattgctgtggggggtccagcccactgcggatag
tgcacttctgggcaggtggtcctgggaggtgtaagaaagcctgctgagca
agcctggctgatttcactagcaagcagtgaagttcatccatggcttccgc
tttagttcctgccctgactttcctcagtgatggacttaatctcatggtat
aagataaaaccgagtctttcatccaaattgcctttggtcatggtgttagc
caacaaacaagcaaacaaaaccaagccaagaaagcaaagcaggacaaaga
cgtttacagacgagagtaagaaggctgaagaggaggagatgactctggat
tatgtgctacaccaagtctaactccatggtcctcagagaaggacctttcc
cggctgtgctctgggagagagacgtgtttctagaaggtttttccattgat
ctttggtttagttgtcaaagagcaacaacaacaagaacaaagctgaagac
caaggggggacttaagaggcagacacagaaggcaattgctgtggctttcc
aaagtgtttcttccacctcgccctaaagagctcctgggtgcagcagtctc
acactccctggaagaattccttgcagagatctacatttctaaccagagtg
tcgaacttttggaaatgaaggttttatactaggtacaatcagtatatatg
atgagaagtgaatgtcctaagttaaaaatctcaattattactagcataaa
caggattctcatacacagtttctacccttctccttttagaccaagagata
aaacaactccccacccccatgatgctgtcatggtaattgtgggaaatgct
ttgacaggttcaatccataatgacacgcatgcatattttcttccctcagt
tttcttttcgcccttgtacaaacatgctagatggtttatgtgtgtgttct
atagatgagtacagagaaactactgtacacagctgagatttttccagaga
aaaaagcccagtactagctctgggtaaaggcagctgtccaccatgtgtct
cactatctgaggacacagccatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33671618_33672762
seq2: B6Ng01-194A06.b_45_1177

seq1  GAATTCATCAATCCTGACTACTAGTTATTTGTCAAAATGCTACATTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAATCCTGACTACTAGTTATTTGTCAAAATGCTACATTAGGA  50

seq1  AATAAAATGTTTCTGCATATCTAGGTTTCCTAAAATAAATGTAACCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTTTCTGCATATCTAGGTTTCCTAAAATAAATGTAACCTCTG  100

seq1  AGGGTATGCAAGCATTCTAGGATTCATACTAGTTAGATGCTTGGGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATGCAAGCATTCTAGGATTCATACTAGTTAGATGCTTGGGCCCCT  150

seq1  GGGCTTACAAATAAGCAAATATCCTTCCTTGGTTTTGGAAAACTGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTACAAATAAGCAAATATCCTTCCTTGGTTTTGGAAAACTGTTGGA  200

seq1  TTATTTCAGATCACACACATACACCCATCTTTGGGGCCTTAAGGGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGATCACACACATACACCCATCTTTGGGGCCTTAAGGGCATTA  250

seq1  ACATTAATGGAAGTGATGCAAAATTCAATTAGAAATTATCTGATGCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATGGAAGTGATGCAAAATTCAATTAGAAATTATCTGATGCTCCC  300

seq1  TGCATGTCGATTTCACTCTACAAGGAGCCTCTTCTGCAGAATCTGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCGATTTCACTCTACAAGGAGCCTCTTCTGCAGAATCTGCCTGA  350

seq1  ACAGATGAGACTCGGCACAGGCAGGGAGAAAGCTGTCAGAGGAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGACTCGGCACAGGCAGGGAGAAAGCTGTCAGAGGAGAAATTT  400

seq1  CAAATAAGGGCAGAAAAATGATCCCAACATGGGAGCCCTCTTCACAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGGGCAGAAAAATGATCCCAACATGGGAGCCCTCTTCACAGCAT  450

seq1  TACCCTTAGCAGAAGTAGAGCCTAGGGCAAGTCACATTATAATAGACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTAGCAGAAGTAGAGCCTAGGGCAAGTCACATTATAATAGACCTA  500

seq1  AAATATTTTAAATGAATGCCAAGGAAGACTGCTACTTTAGATTAAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAATGAATGCCAAGGAAGACTGCTACTTTAGATTAAATGTT  550

seq1  CCTAGGACTAGAGTAAATAACCATAATTGAACATGCAGAGAGACTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACTAGAGTAAATAACCATAATTGAACATGCAGAGAGACTATAGT  600

seq1  GATATCAAAGTCTGATTGCATTGTGTGGACTATACAGGACAAAATAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAAAGTCTGATTGCATTGTGTGGACTATACAGGACAAAATAAGGT  650

seq1  TCTGGAGACCTATTTCCTGGCTTAAAGGGCATGACACTAATGGATTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACCTATTTCCTGGCTTAAAGGGCATGACACTAATGGATTCTAC  700

seq1  CCTAGTCACAAGCCTGAGGCATGGGAGAGAATCATGCCAGAGTGGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCACAAGCCTGAGGCATGGGAGAGAATCATGCCAGAGTGGAAAGA  750

seq1  CTCAAATATCAAGACAGACCAGGGTTTAAATTCAAGCTGTGTCCTTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATCAAGACAGACCAGGGTTTAAATTCAAGCTGTGTCCTTCAAT  800

seq1  TCCCTAGTGGCTTTCAGCAAACTACTGTACTTCATCTTTAAAATGAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTGGCTTTCAGCAAACTACTGTACTTCATCTTTAAAATGAGAAT  850

seq1  AATGTGATTGGGCCTTGTGGTACATGTCTGTAATCCCAACACTTAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATTGGGCCTTGTGGTACATGTCTGTAATCCCAACACTTAGAAGA  900

seq1  CTAAAACAGGAGTAATGTAAGAGTACATACAAATAAACACAAAAACACAT  950
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CTAAAACAGGAGTAATGT-AGAGTACATACAAATAAACAC-AAAACACAT  948

seq1  ACATAGAAAAGTGATATCAGTCTCATAGAGGTTCTAGGAAGACTAGAAGT  1000
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATAG-AAAGTGATATCAGTCTCATAGAGGTTCTAGGAAGACTAG-AGT  996

seq1  GAAGCTCATATTCATTCTGATGGTACTTG-ATATCATAGCATTCAGCAAA  1049
      |||||||||| |||||||||||||||||| ||||||||||| ||||||||
seq2  GAAGCTCATA-TCATTCTGATGGTACTTGAATATCATAGCA-TCAGCAAA  1044

seq1  GTATTTTTATTTATTTACTTATTTAATGTATATGGCTGTTTTACCTACAT  1099
      |||||||||||||||||||||||  |||||||| |||||||   ||||||
seq2  GTATTTTTATTTATTTACTTATT--ATGTATAT-GCTGTTT--ACTACAT  1089

seq1  -GTGTGTCTGAGATATATATATATGTATGTATATATATATATATATA  1145
       |||||||||| ||||||||||||| |||| |||||| |||||||||
seq2  GGTGTGTCTGAAATATATATATATG-ATGT-TATATA-ATATATATA  1133


seq1: chr6_33798581_33799670
seq2: B6Ng01-194A06.g_63_1138 (reverse)

seq1  AAAGATGCTGGTGTCCTCAGGATAGTGAGACCACATGGTGGCCAGGCTGC  50
      |||||||   ||||||||| |||||||||| |||||||||| || |||||
seq2  AAAGATGGCTGTGTCCTCA-GATAGTGAGA-CACATGGTGGACA-GCTGC  47

seq1  CTTTACCCCAGAGCTTAGTAACCTGGGCCTTTTTTCCTCTGGAAAAATCT  100
      ||||| |||||||| |||||  ||||||  ||||| ||||||||||||||
seq2  CTTTA-CCCAGAGC-TAGTA--CTGGGC--TTTTTTCTCTGGAAAAATCT  91

seq1  CAGCTGTGTACAGTAGTTTCTCTGTACTCATCTAATAAGAACACAACACA  150
      ||||||||||||||||||||||||||||||||||   ||||||| |||||
seq2  CAGCTGTGTACAGTAGTTTCTCTGTACTCATCTA--TAGAACAC-ACACA  138

seq1  TAAACCATCCTAGCATGTTTGTACAAGGGCGAAAAGAAAACCTGAGGGAA  200
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TAAACCAT-CTAGCATGTTTGTACAAGGGCGAAAAGAAAA-CTGAGGGAA  186

seq1  GAAAATATGCATGCGTGTCATTATGGATTGAACCTGTCAAAGCATTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGCATGCGTGTCATTATGGATTGAACCTGTCAAAGCATTTCCC  236

seq1  ACAATTACCATGACAGCATCATGGGGGTGGGGAGTTGTTTTATCTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACCATGACAGCATCATGGGGGTGGGGAGTTGTTTTATCTCTTGG  286

seq1  TCTAAAAGGAGAAGGGTAGAAACTGTGTATGAGAATCCTGTTTATGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGGAGAAGGGTAGAAACTGTGTATGAGAATCCTGTTTATGCTAG  336

seq1  TAATAATTGAGATTTTTAACTTAGGACATTCACTTCTCATCATATATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGAGATTTTTAACTTAGGACATTCACTTCTCATCATATATACT  386

seq1  GATTGTACCTAGTATAAAACCTTCATTTCCAAAAGTTCGACACTCTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTACCTAGTATAAAACCTTCATTTCCAAAAGTTCGACACTCTGGTT  436

seq1  AGAAATGTAGATCTCTGCAAGGAATTCTTCCAGGGAGTGTGAGACTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTAGATCTCTGCAAGGAATTCTTCCAGGGAGTGTGAGACTGCTG  486

seq1  CACCCAGGAGCTCTTTAGGGCGAGGTGGAAGAAACACTTTGGAAAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAGCTCTTTAGGGCGAGGTGGAAGAAACACTTTGGAAAGCCAC  536

seq1  AGCAATTGCCTTCTGTGTCTGCCTCTTAAGTCCCCCCTTGGTCTTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGCCTTCTGTGTCTGCCTCTTAAGTCCCCCCTTGGTCTTCAGCT  586

seq1  TTGTTCTTGTTGTTGTTGCTCTTTGACAACTAAACCAAAGATCAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGTTGTTGTTGCTCTTTGACAACTAAACCAAAGATCAATGGAA  636

seq1  AAACCTTCTAGAAACACGTCTCTCTCCCAGAGCACAGCCGGGAAAGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTAGAAACACGTCTCTCTCCCAGAGCACAGCCGGGAAAGGTCC  686

seq1  TTCTCTGAGGACCATGGAGTTAGACTTGGTGTAGCACATAATCCAGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGGACCATGGAGTTAGACTTGGTGTAGCACATAATCCAGAGTC  736

seq1  ATCTCCTCCTCTTCAGCCTTCTTACTCTCGTCTGTAAACGTCTTTGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCCTCTTCAGCCTTCTTACTCTCGTCTGTAAACGTCTTTGTCCT  786

seq1  GCTTTGCTTTCTTGGCTTGGTTTTGTTTGCTTGTTTGTTGGCTAACACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTCTTGGCTTGGTTTTGTTTGCTTGTTTGTTGGCTAACACCA  836

seq1  TGACCAAAGGCAATTTGGATGAAAGACTCGGTTTTATCTTATACCATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAGGCAATTTGGATGAAAGACTCGGTTTTATCTTATACCATGAG  886

seq1  ATTAAGTCCATCACTGAGGAAAGTCAGGGCAGGAACTAAAGCGGAAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCCATCACTGAGGAAAGTCAGGGCAGGAACTAAAGCGGAAGCCA  936

seq1  TGGATGAACTTCACTGCTTGCTAGTGAAATCAGCCAGGCTTGCTCAGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAACTTCACTGCTTGCTAGTGAAATCAGCCAGGCTTGCTCAGCAG  986

seq1  GCTTTCTTACACCTCCCAGGACCACCTGCCCAGAAGTGCACTATCCGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTACACCTCCCAGGACCACCTGCCCAGAAGTGCACTATCCGCAG  1036

seq1  TGGGCTGGACCCCCCACAGCAATCATTCATCAAGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGACCCCCCACAGCAATCATTCATCAAGGAATTC  1076


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