BAC Information

Click to search

BAC

Clone NameB6Ng01-195B14
Chromosome6 (Build37)
Map Location 137,951,092 - 138,104,950
singlet/doubletdoublet
Overlap gene9830102E05Rik, Mgst1
Upstream geneRerg, Ptpro, Eps8, Strap, Dera
Downstream geneLmo3, Igbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195B14.bB6Ng01-195B14.g
ACCGA017611GA017612
length1,189967
definitionB6Ng01-195B14.b B6Ng01-195B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,951,092 - 137,952,261)(138,103,991 - 138,104,950)
sequence
gaattcataaatcaatccttaagtggagttactaaaaataataaaatgct
aaatttaagtgctttcacgggtagaacaaaatttaatttttaaagatttc
tttatattatttttaattacgtgtctgtatatgggtatttgcccatgaat
gcagagccatcagatacccgaagactggagttatattcagttgccagcaa
cctgatctcacagttgggattgaaccttggtcccctgtaagagcagtaca
tgttcttagcctctgagccattttcctcctttgttccagatgatgagttt
gctttgtctagtggatgctcatttggtttgtctagcagatgctcatttgt
gaagtctttccttccttcacaactaaagtcactgagagtattctttacaa
tttttaaatgtttccaagaaaggtctttctcctctttcaaatatttagaa
gcaaaactatttcttcacattaataggagtatagagagtctgccctttca
gcccgtgcctgctgtcggtggcttgctgcacatttcataaagaagatggg
gtggtgcctgctggcattcttgcctgccttctccatcctttcctgagcct
tctttgtgggaagaagtccagctctaggtgttggggcctggctgggtctc
cgttccctcctccttggagcttcagcgccgttgaatccctcctttctcct
gtaacgttttccttctctgcctacattggctgttctcagcagtcacacac
agtcaaagagtgaaagcagcaagagctggtacgtaagactccctcagaaa
caaggacttctcagttgagctttgggactgggagtcttctacttttaggg
taagtatgtcttcaattttgtatggatcacgctttgcatatttatgtccc
cagtagtgtacggggacatacactaaacaatttattcactttgtatctga
gattaaaatttaattgcaacactccgtgttttgatttgctggagtctgac
aacctcgtccacacacccctttccagtctgtcactcatcttccaattcgt
cttcagcccgaagtcctttcaaaagaagcaacttttgtgttccatgctta
actaggtaccgctgcgatcccttctttcaggtctgtcttcaaccccattc
ctgtagaacggcttctaacggggtctatgagagacctta

gaattctttttttaaaaagaatcaattagaaggtgaagatcacaattctc
tttacaagtacagtctgctccttagcagcctgtaagccattgacaaagta
actccatagccaacaaaaaatgccaagcccctgtttggctgaggaagggg
agtcaagtaagcaatggtgtggtagatccgagcacctacaaagattctga
agtgcatgagggctgtagagagatctggtccactcagggagtacaggagg
ccgatgccgagaaagggaacgatgttttcaagatcattcaggtgggctct
gtgagagaagatgatgccataggtatcaaaatcagtgggaatgcatggat
cctgccctctcttccaaaacaaaatagtcttaatgaatgtctgggttagg
ttggaatgggtttgagtcaagattagctaagggtggcttgaaacttgcta
tacatacagccagactctgctcaaactcacaactctcctttgctgcctac
aagtgctctgatttcaggtgtgaatcccccacacccagcaatgctaacgg
atctttaccttctgaaggaagaatcccgattgtcttcccagctcccttgc
ttccttactaatgtagtttttatttagaccatttcattttgattattttt
ttaatcttggaaaagcagtttgttgttgctagaatatctaaatagcatct
atccagaaaaaaacacacatcattcatttaagtacaagtatcacttttgc
aattcaagtttcttttgataaaatttttttcttcgcaaatgaagaatatt
ctttctttatgatctgtatcagaactcctcctttcacttcagagtgtttg
tgtagaaaatttctttatataaagcagcatcaaaatctagtgttcctttc
ttatccagataaaacacagagcctatcctctgagattatgggagatacct
tcgcaaaatctctcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137951092_137952261
seq2: B6Ng01-195B14.b_47_1235

seq1  GAATTCATAAATCAATCCTTAAGTGGAGTTACTAAAAATAATAAAATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATCAATCCTTAAGTGGAGTTACTAAAAATAATAAAATGCT  50

seq1  AAATTTAAGTGCTTTCACGGGTAGAACAAAATTTAATTTTTAAAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGTGCTTTCACGGGTAGAACAAAATTTAATTTTTAAAGATTTC  100

seq1  TTTATATTATTTTTAATTACGTGTCTGTATATGGGTATTTGCCCATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATTTTTAATTACGTGTCTGTATATGGGTATTTGCCCATGAAT  150

seq1  GCAGAGCCATCAGATACCCGAAGACTGGAGTTATATTCAGTTGCCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCATCAGATACCCGAAGACTGGAGTTATATTCAGTTGCCAGCAA  200

seq1  CCTGATCTCACAGTTGGGATTGAACCTTGGTCCCCTGTAAGAGCAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTCACAGTTGGGATTGAACCTTGGTCCCCTGTAAGAGCAGTACA  250

seq1  TGTTCTTAGCCTCTGAGCCATTTTCCTCCTTTGTTCCAGATGATGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGCCTCTGAGCCATTTTCCTCCTTTGTTCCAGATGATGAGTTT  300

seq1  GCTTTGTCTAGTGGATGCTCATTTGGTTTGTCTAGCAGATGCTCATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCTAGTGGATGCTCATTTGGTTTGTCTAGCAGATGCTCATTTGT  350

seq1  GAAGTCTTTCCTTCCTTCACAACTAAAGTCACTGAGAGTATTCTTTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTCCTTCCTTCACAACTAAAGTCACTGAGAGTATTCTTTACAA  400

seq1  TTTTTAAATGTTTCCAAGAAAGGTCTTTCTCCTCTTTCAAATATTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGTTTCCAAGAAAGGTCTTTCTCCTCTTTCAAATATTTAGAA  450

seq1  GCAAAACTATTTCTTCACATTAATAGGAGTATAGAGAGTCTGCCCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTATTTCTTCACATTAATAGGAGTATAGAGAGTCTGCCCTTTCA  500

seq1  GCCCGTGCCTGCTGTCGGTGGCTTGCTGCACATTTCATAAAGAAGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGCCTGCTGTCGGTGGCTTGCTGCACATTTCATAAAGAAGATGGG  550

seq1  GTGGTGCCTGCTGGCATTCTTGCCTGCCTTCTCCATCCTTTCCTGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCCTGCTGGCATTCTTGCCTGCCTTCTCCATCCTTTCCTGAGCCT  600

seq1  TCTTTGTGGGAAGAAGTCCAGCTCTAGGTGTTGGGGCCTGGCTGGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGGAAGAAGTCCAGCTCTAGGTGTTGGGGCCTGGCTGGGTCTC  650

seq1  CGTTCCCTCCTCCTTGGAGCTTCAGCGCCGTTGAATCCCTCCTTTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCTCCTCCTTGGAGCTTCAGCGCCGTTGAATCCCTCCTTTCTCCT  700

seq1  GTAACGTTTTCCTTCTCTGCCTACATTGGCTGTTCTCAGCAGTCACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTTTTCCTTCTCTGCCTACATTGGCTGTTCTCAGCAGTCACACAC  750

seq1  AGTCAAAGAGTGAAAGCAGCAAGAGCTGGTACGTAAGACTCCCTCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGAGTGAAAGCAGCAAGAGCTGGTACGTAAGACTCCCTCAGAAA  800

seq1  CAAGGACTTCTCAGTTGAGCTTTGGGACTGGGAGTCTTCTAC-TTTAGGG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAGGACTTCTCAGTTGAGCTTTGGGACTGGGAGTCTTCTACTTTTAGGG  850

seq1  TAAGTATGTCTTCAATTTTGTATGGATCACGCTTTGCATATTTATGTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGTCTTCAATTTTGTATGGATCACGCTTTGCATATTTATGTCCC  900

seq1  CAGTAGTGTACGGGGACATACACTAAACAATTTATTCACTTTGTATCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGTACGGGGACATACACTAAACAATTTATTCACTTTGTATCTGA  950

seq1  GATTAAAATTTAATTGC-ACACTCGGTGTTTTGATTTGCT-GAGTCTGAC  997
      ||||||||||||||||| |||||| ||||||||||||||| |||||||||
seq2  GATTAAAATTTAATTGCAACACTCCGTGTTTTGATTTGCTGGAGTCTGAC  1000

seq1  AACCTCGCCCACACACCC--TTCCAG-CTGTCACTCATCTTCCAAATCGT  1044
      ||||||| ||||||||||  |||||| |||||||||||||||||| ||||
seq2  AACCTCGTCCACACACCCCTTTCCAGTCTGTCACTCATCTTCCAATTCGT  1050

seq1  C-TCAGCCCGAAGTCC-TTCAAAAG-AGC-ACCTTTGTG-TCCATGCTTA  1089
      | |||||||||||||| |||||||| ||| || |||||| ||||||||||
seq2  CTTCAGCCCGAAGTCCTTTCAAAAGAAGCAACTTTTGTGTTCCATGCTTA  1100

seq1  CCTAGGCA-CGCTGC-AGCCCT--CTTCA-GTCTGGTTCTCACCCCCA-T  1133
       ||||| | |||||| | ||||   |||| |||| ||  ||| ||||| |
seq2  ACTAGGTACCGCTGCGATCCCTTCTTTCAGGTCT-GTCTTCAACCCCATT  1149

seq1  CCTG-AG-ACGGCTCCT-ACGGGTGCTATGAGAGACCTTA  1170
      |||| || |||||| || |||||  |||||||||||||||
seq2  CCTGTAGAACGGCTTCTAACGGGGTCTATGAGAGACCTTA  1189


seq1: chr6_138103991_138104950
seq2: B6Ng01-195B14.g_68_1034 (reverse)

seq1  TGTGTGAGA-TCTGCG-AGGTATCTCCCAT-ATCTCAGAGGATA-GCTCT  46
      |||| |||| | |||| ||||||||||||| ||||||||||||| |||||
seq2  TGTGAGAGATTTTGCGAAGGTATCTCCCATAATCTCAGAGGATAGGCTCT  50

seq1  GTGTTTTATCTGGATATGAAA-GAACACTAGA-TTTGATGCTGCTTTATA  94
      |||||||||||||||| |||| |||||||||| |||||||||||||||||
seq2  GTGTTTTATCTGGATAAGAAAGGAACACTAGATTTTGATGCTGCTTTATA  100

seq1  TAAAGAAA-TTTCTACACAAACACTCTGAAGTG-AAGGAGGAGTTCTGAT  142
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGAAATTTTCTACACAAACACTCTGAAGTGAAAGGAGGAGTTCTGAT  150

seq1  ACAGATCATAAAAGAAAGAATATTCTTCATTTGCGAAGAAAAAAATTTTA  192
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAT-AAAGAAAGAATATTCTTCATTTGCGAAGAAAAAAATTTTA  199

seq1  TCAAAAGAAACTTGAATTGCAAAAGTGATACTTGTACTTAAATGAATGAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAACTTGAATTGCAAAAGTGATACTTGTACTTAAATGAATGAT  249

seq1  GTGTGTTTTTTTCTGGATAGATGCTATTTAGATATTCTAGCAACAACAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTTTTCTGGATAGATGCTATTTAGATATTCTAGCAACAACAAA  299

seq1  CTGCTTTTCCAAGATTAAAAAAATAATCAAAATGAAATGGTCTAAATAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCAAGATTAAAAAAATAATCAAAATGAAATGGTCTAAATAAA  349

seq1  AACTACATTAGTAAGGAAGCAAGGGAGCTGGGAAGACAATCGGGATTCTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTAGTAAGGAAGCAAGGGAGCTGGGAAGACAATCGGGATTCTT  399

seq1  CCTTCAGAAGGTAAAGATCCGTTAGCATTGCTGGGTGTGGGGGATTCACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAAGGTAAAGATCCGTTAGCATTGCTGGGTGTGGGGGATTCACA  449

seq1  CCTGAAATCAGAGCACTTGTAGGCAGCAAAGGAGAGTTGTGAGTTTGAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATCAGAGCACTTGTAGGCAGCAAAGGAGAGTTGTGAGTTTGAGC  499

seq1  AGAGTCTGGCTGTATGTATAGCAAGTTTCAAGCCACCCTTAGCTAATCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGGCTGTATGTATAGCAAGTTTCAAGCCACCCTTAGCTAATCTT  549

seq1  GACTCAAACCCATTCCAACCTAACCCAGACATTCATTAAGACTATTTTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAACCCATTCCAACCTAACCCAGACATTCATTAAGACTATTTTGT  599

seq1  TTTGGAAGAGAGGGCAGGATCCATGCATTCCCACTGATTTTGATACCTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGAGAGGGCAGGATCCATGCATTCCCACTGATTTTGATACCTAT  649

seq1  GGCATCATCTTCTCTCACAGAGCCCACCTGAATGATCTTGAAAACATCGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATCTTCTCTCACAGAGCCCACCTGAATGATCTTGAAAACATCGT  699

seq1  TCCCTTTCTCGGCATCGGCCTCCTGTACTCCCTGAGTGGACCAGATCTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTCGGCATCGGCCTCCTGTACTCCCTGAGTGGACCAGATCTCT  749

seq1  CTACAGCCCTCATGCACTTCAGAATCTTTGTAGGTGCTCGGATCTACCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCCTCATGCACTTCAGAATCTTTGTAGGTGCTCGGATCTACCAC  799

seq1  ACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATT  849

seq1  TTTTGTTGGCTATGGAGTTACTTTGTCAATGGCTTACAGGCTGCTAAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGCTATGGAGTTACTTTGTCAATGGCTTACAGGCTGCTAAGGA  899

seq1  GCAGACTGTACTTGTAAAGAGAATTGTGATCTTCACCTTCTAATTGATTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTACTTGTAAAGAGAATTGTGATCTTCACCTTCTAATTGATTC  949

seq1  TTTTTAAAAAAAGAATTC  960
      ||||||||||||||||||
seq2  TTTTTAAAAAAAGAATTC  967


| Home | SequenceCutter | Blast | Download |