BAC Information

Click to search

BAC

Clone NameB6Ng01-196E17
Chromosome6 (Build37)
Map Location 106,253,883 - 106,392,799
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E17.bB6Ng01-196E17.g
ACCGA018473GA018474
length642883
definitionB6Ng01-196E17.b B6Ng01-196E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,253,883 - 106,254,507)(106,391,914 - 106,392,799)
sequence
gaattcacagaatgatctagaaccaatttgcttaagtgtgagcttatgaa
tggctttgtcttgttttattttttcttgaatagttttgtgacattgagga
gggcctgcttagcagtgatagaacatatcatctatattctgatggttgtg
aaaatggccctctcttcacaggcagtgaatatgtccttatcagactccta
cctagaaaccttttaatgctagagagtgggcaactgttctaagtagtctg
ttccgccattagaattctctatgaaagaggccacagttctgactttctat
atctagcactccgagggactcaagagagtggaccagcaagatggttcaat
gggtaaaggcacttgcctggccacctgagtgaaatccctaaaattcacat
tcagttgggaaaacaaaactaacttcagaaacttttcttctgacattctt
atgtgtactaggagaagtgtacatcccaacaaataataatgaaaaattta
aaataaacacagagagggcacatgggctagccccaagggtcacacctccc
ttagcagtaactaggggtaaacttggaagaaaatcagccctttgtttctt
ttgtaaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccacagatggtctgctgtacgtctatgtgtctgatgcattgggaa
tggaatctaactttactgggagtgtgctctgtgcacaaagatctaacaaa
caaaagactagctaatgtctctaaaatgaaaacagctttagtagtagaac
cagatgattttattcattctttttaaactcttggaagccagaccgactag
tagcaatttagcaatagatgccggatcacaaaacactatttctgatgatg
aataattaggttgtgataatggtagacattaatttttcttatctgtaaac
aaaagaatacatgaaagcaaagataaaaatctaaggtcatataattccac
actttaaagtcttaaaaaattatatgtgacatgttcatgtccttgtatga
gtatttcccatgagtgtgtaaattcagaaggagaccacaggttgacttca
agtgtcttcttttcatcactcatcaccttatttgttcaagacatggtctc
tcactgaactggaagtctctccactttgactagactgaatagccagtgag
catgcaggatccattattccttctacaaccccccccgcccccagtgttga
ggttatagaacactctcactgcaccccattttatgtagtattagaagact
gaagttcaggttctcagaactttacataagaaatcacgtttaccccactg
agcacctttccagccctaaatatttttttttatataaggaatgttcagca
ttcagcttggatgatgtgattcaaagatccaccccagcaggctgcctata
actggtttgtagaaccagatcaagcgactgatcctcaatctatgctgctc
aagtactcagctcgtacatggatagactggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106253883_106254507
seq2: B6Ng01-196E17.b_41_682

seq1  GAATTCACAGAATGATCTAGAACCAATTTGCTTAAGTGTGAGCTTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAATGATCTAGAACCAATTTGCTTAAGTGTGAGCTTATGAA  50

seq1  TGGCTTTGTCTTGTTTTATTTTTTCTTGAATAGTTTTGTGACATTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGTCTTGTTTTATTTTTTCTTGAATAGTTTTGTGACATTGAGGA  100

seq1  GGGCCTGCTTAGCAGTGATAGAACATATCATCTATATTCTGATGGTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCTTAGCAGTGATAGAACATATCATCTATATTCTGATGGTTGTG  150

seq1  AAAATGGCCCTCTCTTCACAGGCAGTGAATATGTCCTTATCAGACTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCCTCTCTTCACAGGCAGTGAATATGTCCTTATCAGACTCCTA  200

seq1  CCTAGAAACCTTTTAATGCTAGAGAGTGGGCAACTGTTCTAAGTAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAACCTTTTAATGCTAGAGAGTGGGCAACTGTTCTAAGTAGTCTG  250

seq1  TTCCGCCATTAGAATTCTCTATGAAAGAGGCCACAGTTCTGACTTTCTAT  300
      |||||||||||||||||||||||||||||                 ||||
seq2  TTCCGCCATTAGAATTCTCTATGAAAGAGNNNNNNNNNNNNNNNNNCTAT  300

seq1  ATCTAGCACTCCGAGGGACTCAAGAGAGTGGACCAGCAAGATGGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCACTCCGAGGGACTCAAGAGAGTGGACCAGCAAGATGGTTCAAT  350

seq1  GGGTAAAGGCACTTGCCTGGCCACCTGAGTGAAATCCCTAAAATTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGGCACTTGCCTGGCCACCTGAGTGAAATCCCTAAAATTCACAT  400

seq1  TCAGTTGGGAAAACAAAACTAACTTCAGAAACTTTTCTTCTGACATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGGAAAACAAAACTAACTTCAGAAACTTTTCTTCTGACATTCTT  450

seq1  ATGTGTACTAGGAGAAGTGTACATCCCAAC-AATAATAATGAAAAATTTA  499
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTGTACTAGGAGAAGTGTACATCCCAACAAATAATAATGAAAAATTTA  500

seq1  AA--TAACACAGAGA-GGCACAT-GGCTAGCCC--AAGGTCACAC--TCC  541
      ||   |||||||||| ||||||| |||||||||  | ||||||||   ||
seq2  AAATAAACACAGAGAGGGCACATGGGCTAGCCCCAAGGGTCACACCTCCC  550

seq1  TTAGCAGT-ACTA-GGGTAAACTTGGAAG-ATATCAGCC--TTGTT--CT  584
      |||||||| |||| ||||||||||||||| | |||||||  |||||   |
seq2  TTAGCAGTAACTAGGGGTAAACTTGGAAGAAAATCAGCCCTTTGTTTCTT  600

seq1  TTGT-AAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  625
      |||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  642

seq1: chr6_106391914_106392799
seq2: B6Ng01-196E17.g_62_944 (reverse)

seq1  CCCCCAGTCTATCATGGTACAGAGCTGAGGTTAACTCTGATGCAGCATTA  50
      |||||||||||||   |||| ||||||||    ||| ||| |||||| ||
seq2  CCCCCAGTCTATCCATGTAC-GAGCTGAG---TACT-TGA-GCAGCA-TA  43

seq1  GATTGGAGATCCAGTCGCTTTGATCGTGTTCTACAAAACCAG-TATAGGG  99
      |||||  ||| ||||||| ||||||  ||||||| ||||||| |||||| 
seq2  GATTGAGGAT-CAGTCGC-TTGATCTGGTTCTAC-AAACCAGTTATAGG-  89

seq1  CCAGCCCTGCTGGGGTGGAACCCTTTGATTCCACATCACTCAAGCTGAAT  149
       ||| ||||||||||||||   |||||| | |||||||  ||||||||| 
seq2  -CAG-CCTGCTGGGGTGGA--TCTTTGAAT-CACATCATCCAAGCTGAA-  133

seq1  TGCTGAACATTCCTTATAT-AAAAAAAATATTTAGGGCTGGAAAGGTGGC  198
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  TGCTGAACATTCCTTATATAAAAAAAAATATTTAGGGCTGGAAAGGT-GC  182

seq1  TCAGTGGG--TAACGTGA-TTCCTATGTAA--GTCTGAGACCCTGAACTT  243
      ||||||||   ||||||| ||| |||||||   ||||||| |||||||||
seq2  TCAGTGGGGTAAACGTGATTTCTTATGTAAAGTTCTGAGAACCTGAACTT  232

seq1  CAGTC-TCTATACCTACATAAAATGGGGTGCAGTG-GAGTGTTCTATAAC  291
      ||||| ||||   |||||||||||||||||||||| ||||||||||||||
seq2  CAGTCTTCTAATACTACATAAAATGGGGTGCAGTGAGAGTGTTCTATAAC  282

seq1  CTCAACACTGGGGGC-GGGGGGGTTGTAGA--GGATAATGGATCCTGCAT  338
      ||||||||||||||| ||||||||||||||  | ||||||||||||||||
seq2  CTCAACACTGGGGGCGGGGGGGGTTGTAGAAGGAATAATGGATCCTGCAT  332

seq1  GCTCACTGGCTATTCAGTCTAGTCAAAGTG--GAGACTTCCAAGTTCAGT  386
      ||||||||||||||||||||||||||||||  ||||||||| ||||||||
seq2  GCTCACTGGCTATTCAGTCTAGTCAAAGTGGAGAGACTTCC-AGTTCAGT  381

seq1  GAGAGACCATGTC-TGAACAAATAAGGTGATGAGTGATG-AAAGAAGACA  434
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GAGAGACCATGTCTTGAACAAATAAGGTGATGAGTGATGAAAAGAAGACA  431

seq1  CTTGAAGTCAACCTGTGGTCTCCTTCTGAATTTACACACTCATGGGAAAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTCAACCTGTGGTCTCCTTCTGAATTTACACACTCATGGGAAAT  481

seq1  ACTCATACAAGGACATGAACATGTCACATATAATTTTTTAAGACTTTAAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACAAGGACATGAACATGTCACATATAATTTTTTAAGACTTTAAA  531

seq1  GTGTGGAATTATATGACCTTAGATTTTTATCTTTGCTTTCATGTATTCTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATTATATGACCTTAGATTTTTATCTTTGCTTTCATGTATTCTT  581

seq1  TTGTTTACAGATAAGAAAAATTAATGTCTACCATTATCACAACCTAATTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACAGATAAGAAAAATTAATGTCTACCATTATCACAACCTAATTA  631

seq1  TTCATCATCAGAAATAGTGTTTTGTGATCCGGCATCTATTGCTAAATTGC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATCAGAAATAGTGTTTTGTGATCCGGCATCTATTGCTAAATTGC  681

seq1  TACTAGTCGGTCTGGCTTCCAAGAGTTTAAAAAGAATGAATAAAATCATC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTCGGTCTGGCTTCCAAGAGTTTAAAAAGAATGAATAAAATCATC  731

seq1  TGGTTCTACTACTAAAGCTGTTTTCATTTTAGAGACATTAGCTAGTCTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTACTACTAAAGCTGTTTTCATTTTAGAGACATTAGCTAGTCTTT  781

seq1  TGTTTGTTAGATCTTTGTGCACAGAGCACACTCCCAGTAAAGTTAGATTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTAGATCTTTGTGCACAGAGCACACTCCCAGTAAAGTTAGATTC  831

seq1  CATTCCCAATGCATCAGACACATAGACGTACAGCAGACCATCTGTGGAAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAATGCATCAGACACATAGACGTACAGCAGACCATCTGTGGAAT  881

seq1  TC  886
      ||
seq2  TC  883