BAC Information

Click to search

BAC

Clone NameB6Ng01-196F12
Chromosome6 (Build37)
Map Location 119,755,064 - 119,917,357
singlet/doubletdoublet
Overlap geneErc1, LOC666887, Rad52, Wnk1, EG406236
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196F12.bB6Ng01-196F12.g
ACCGA018511GA018512
length1,0241,023
definitionB6Ng01-196F12.b B6Ng01-196F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,916,323 - 119,917,357)(119,755,064 - 119,756,103)
sequence
gaattcctatctttattaaatgaatcttttttttccaggaagatgctttt
tgcttataaaagatgtttattttggagtccattgattgatcagtcctgct
ttggacataggccccaagattaatggacacattaatacaaagaaaactac
tactaatatatatattaacctcttttaacagtctgttctttaggcttaat
gtggtaaataatcttgggtaatttatttctgaatattgacaatctccctt
tgcttaacagttattttcaacctcttgggacttcccccaccacagggtta
tgtatgtttctaaaagacaaacaggattgatcatttatgtagatattaaa
tgcttaagccattaacatagttgtatttatttgctgctctaaaatcatac
tttctagatttttgatgacagtattctaatagagtagttataaagaatta
caagtctttataataaaatattttataattctattgtctcatttcaagaa
ctaactatgtcttacaataatggataaactgtaagagaaagtttaaaaat
aagaaaggcaggtaaaaaattggaaccaaaatgaactaaattatgataca
tacttacaggctccaagtttggctgaaagtattttttgcagtcagttttg
aaaaagaaataggccataaacttgctccagacaacccgtaactgtgttaa
actctttgtcttaagctacttcaaattttgtaggtctaaactgaattttt
tattttgagggtggtaatgattcttagagatttaaatagaaggcatttcc
cccaactggctcctttataacggtataaaatatttctgatacccatttgt
gaattttttttcttctgatcactgacttttacctttgtacagaacatggc
aagtataataaagtagtgtaagcaaacacttttttatgctgcctctaaat
agatgcatttatttccctcacatggcctgagctctgcaatatgtacctaa
tctcccaatctcgtactctataga
gaattctgtggattcctaagcaattttccagaccaaggatctacaaagag
cagatgtagaattaccaccttccgcaagtaaagaaacaccactggactgg
ctgcttcataaaagcaagaacacttaacccaagcatgtagcacacctgcg
atcccagctctaggaagggagaaggaagagcactgaagctcagaggtagc
ctagagtgtacacagagtttcaggagccggggctacacagggaaaccctg
tcttaaaacaaagcaaacaaaagagggaaacattatcaagaatactatca
tccttaccttaagaagattaaaactgcataccacttccaggactaccatt
cccctctttggacacttcaagacacaccttcctctgcactgtctcagtac
agcaaacagacacttctactaatttttcctatgcattttcagtatttatt
tacaggagcagccacaatgacctgggaatgtctaaccaatcttctaaggc
aaatgtttttttattagcattttgtttataaagttatatattgagagtat
catctcccatattcctagctttctaaaagtaaaattttatagaaactgac
agctttctatgtacctgaaaaaacacctatattataaactactacctttt
aaactcacctattataaaatttgttgcaaaatcaatttagtaattgagat
accctttttcagtaagcaaaataaaacttaaaataattttagtgcctctc
ccataaaggagagcaggcattaatatcacaaagaatgttttgatttttta
tctgggttatatttcagaagtatttaaatttataccccaataaaagcata
catcccaagagcttctcttccagttgaaaaccaaaaacaaaacactttta
tttaaggagctcccattaaatatattttgttgttttatgtgttctgctgc
tgtgtttccagacaggattctgtgtgtagcctatgctgtgactcactctg
tagtctggcttgactcagagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119916323_119917357
seq2: B6Ng01-196F12.b_43_1066 (reverse)

seq1  TCTATTAGAGTACGAGATTTGGGAGATTAAGGTTACATTATTTGCAAGAG  50
      |||| |||||||||||| |||||||||||  | |||||   |||| ||||
seq2  TCTA-TAGAGTACGAGA-TTGGGAGATTA--GGTACAT--ATTGC-AGAG  43

seq1  CTCAGGCCATGTGAGGGAAATAAATGCATCTATTTTAGAAGGCAGCATAA  100
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  CTCAGGCCATGTGAGGGAAATAAATGCATCTA-TTTAG-AGGCAGCATAA  91

seq1  AAAGTTGTTTGCTTACACTACTTTATTATACTTGCCATGTTCTGTACAAA  150
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTTGCTTACACTACTTTATTATACTTGCCATGTTCTGTACAAA  141

seq1  GGTTAAAAAGTCAGTGATCAGAAGAAAAAAAATTCACAAATGGGTATCAG  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGT--AAAAGTCAGTGATCAGAAGAAAAAAAATTCACAAATGGGTATCAG  189

seq1  AAATATTTTATACCGTTATAAAGGAGCCAGTTGGGGGAAATGCCTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTATACCGTTATAAAGGAGCCAGTTGGGGGAAATGCCTTCTAT  239

seq1  TTAAATCTCTAAGAATCATTACCACCCTCAAAATAAAAAATTCAGTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTCTAAGAATCATTACCACCCTCAAAATAAAAAATTCAGTTTAG  289

seq1  ACCTACAAAATTTGAAGTAGCTTAAGACAAAGAGTTTAACACAGTTACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAAATTTGAAGTAGCTTAAGACAAAGAGTTTAACACAGTTACGG  339

seq1  GTTGTCTGGAGCAAGTTTATGGCCTATTTCTTTTTCAAAACTGACTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGGAGCAAGTTTATGGCCTATTTCTTTTTCAAAACTGACTGCAA  389

seq1  AAAATACTTTCAGCCAAACTTGGAGCCTGTAAGTATGTATCATAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTCAGCCAAACTTGGAGCCTGTAAGTATGTATCATAATTTAG  439

seq1  TTCATTTTGGTTCCAATTTTTTACCTGCCTTTCTTATTTTTAAACTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGGTTCCAATTTTTTACCTGCCTTTCTTATTTTTAAACTTTCT  489

seq1  CTTACAGTTTATCCATTATTGTAAGACATAGTTAGTTCTTGAAATGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTTATCCATTATTGTAAGACATAGTTAGTTCTTGAAATGAGAC  539

seq1  AATAGAATTATAAAATATTTTATTATAAAGACTTGTAATTCTTTATAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTATAAAATATTTTATTATAAAGACTTGTAATTCTTTATAACT  589

seq1  ACTCTATTAGAATACTGTCATCAAAAATCTAGAAAGTATGATTTTAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTAGAATACTGTCATCAAAAATCTAGAAAGTATGATTTTAGAGC  639

seq1  AGCAAATAAATACAACTATGTTAATGGCTTAAGCATTTAATATCTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAATACAACTATGTTAATGGCTTAAGCATTTAATATCTACATA  689

seq1  AATGATCAATCCTGTTTGTCTTTTAGAAACATACATAACCCTGTGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCAATCCTGTTTGTCTTTTAGAAACATACATAACCCTGTGGTGGG  739

seq1  GGAAGTCCCAAGAGGTTGAAAATAACTGTTAAGCAAAGGGAGATTGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCCAAGAGGTTGAAAATAACTGTTAAGCAAAGGGAGATTGTCAA  789

seq1  TATTCAGAAATAAATTACCCAAGATTATTTACCACATTAAGCCTAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAAATAAATTACCCAAGATTATTTACCACATTAAGCCTAAAGAA  839

seq1  CAGACTGTTAAAAGAGGTTAATATATATATTAGTAGTAGTTTTCTTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTTAAAAGAGGTTAATATATATATTAGTAGTAGTTTTCTTTGTA  889

seq1  TTAATGTGTCCATTAATCTTGGGGCCTATGTCCAAAGCAGGACTGATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTCCATTAATCTTGGGGCCTATGTCCAAAGCAGGACTGATCAA  939

seq1  TCAATGGACTCCAAAATAAACATCTTTTATAAGCAAAAAGCATCTTCCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGACTCCAAAATAAACATCTTTTATAAGCAAAAAGCATCTTCCTG  989

seq1  GAAAAAAAAGATTCATTTAATAAAGATAGGAATTC  1035
      |||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGATTCATTTAATAAAGATAGGAATTC  1024

seq1: chr6_119755064_119756103
seq2: B6Ng01-196F12.g_66_1088

seq1  GAATTCTGTGGATTCCTAAGCAATTTTCCAGACCAAGGATCTACAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGATTCCTAAGCAATTTTCCAGACCAAGGATCTACAAAGAG  50

seq1  CAGATGTAGAATTACCACCTTCCGCAAGTAAAGAAACACCACTGGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAGAATTACCACCTTCCGCAAGTAAAGAAACACCACTGGACTGG  100

seq1  CTGCTTCATAAAAGCAAGAACACTTAACCCAAGCATGTAGCACACCTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCATAAAAGCAAGAACACTTAACCCAAGCATGTAGCACACCTGCG  150

seq1  ATCCCAGCTCTAGGAAGGGAGAAGGAAGAGCACTGAAGCTCAGAGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCTCTAGGAAGGGAGAAGGAAGAGCACTGAAGCTCAGAGGTAGC  200

seq1  CTAGAGTGTACACAGAGTTTCAGGAGCCGGGGCTACACAGGGAAACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGTACACAGAGTTTCAGGAGCCGGGGCTACACAGGGAAACCCTG  250

seq1  TCTTAAAACAAAGCAAACAAAAGAGGGAAACATTATCAAGAATACTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACAAAGCAAACAAAAGAGGGAAACATTATCAAGAATACTATCA  300

seq1  TCCTTACCTTAAGAAGATTAAAACTGCATACCACTTCCAGGACTACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCTTAAGAAGATTAAAACTGCATACCACTTCCAGGACTACCATT  350

seq1  CCCCTCTTTGGACACTTCAAGACACACCTTCCTCTGCACTGTCTCAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTGGACACTTCAAGACACACCTTCCTCTGCACTGTCTCAGTAC  400

seq1  AGCAAACAGACACTTCTACTAATTTTTCCTATGCATTTTCAGTATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGACACTTCTACTAATTTTTCCTATGCATTTTCAGTATTTATT  450

seq1  TACAGGAGCAGCCACAATGACCTGGGAATGTCTAACCAATCTTCTAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGCAGCCACAATGACCTGGGAATGTCTAACCAATCTTCTAAGGC  500

seq1  -AATGTTTTTTTATTAGCA-TTTGTTTATAAAGTTATATATTGAGAGTAT  548
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATGTTTTTTTATTAGCATTTTGTTTATAAAGTTATATATTGAGAGTAT  550

seq1  CATCTCCCATATTCCTAGCTTTCTAAAAGTAAAATTTTATAGAAACTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCATATTCCTAGCTTTCTAAAAGTAAAATTTTATAGAAACTGAC  600

seq1  AGC-TTCTATGTACCTGAAAAAACACCTATATTATAAACTACTACCTTTT  647
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTATGTACCTGAAAAAACACCTATATTATAAACTACTACCTTTT  650

seq1  AAACTCACCTATTATAAAATTTGTTGCAAAATCAATTTAGTAATTGAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACCTATTATAAAATTTGTTGCAAAATCAATTTAGTAATTGAGAT  700

seq1  ACCC-TTTTCAGTAAGCAAAATAAAACTTAAAATAA-TTTAGTGCCTCTC  745
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCCTTTTTCAGTAAGCAAAATAAAACTTAAAATAATTTTAGTGCCTCTC  750

seq1  CCATAAAGGAGAGCAGGCATTAATATCACAAAGAATGTTTTGA-TTTTTA  794
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCATAAAGGAGAGCAGGCATTAATATCACAAAGAATGTTTTGATTTTTTA  800

seq1  TCTGGGTTATAATTCAGAAGTATTTAAATTTATACCCCAATAAAAGCATA  844
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTATATTTCAGAAGTATTTAAATTTATACCCCAATAAAAGCATA  850

seq1  CATCCCAAGAGCTTCTCTTCCAAGTTGAAAAACAAAAAACAAAAACAACT  894
      ||||||||||||||||||||| ||||| ||||| ||||||||||   |||
seq2  CATCCCAAGAGCTTCTCTTCC-AGTTG-AAAACCAAAAACAAAA--CACT  896

seq1  TTTATTTTAAAGGAGCTTCCCATTTAAATTATTATTTTTGTTTGTTTTTA  944
      |||||||  ||||||| ||||||| ||     ||| |||  |||||||  
seq2  TTTATTT--AAGGAGC-TCCCATTAAA-----TATATTTTGTTGTTTTAT  938

seq1  TTGTTGTTTCTGCTGCTGTGTTTCCAGACAGGGTTTCTGTGTGTAGCCTT  994
       ||    ||||||||||||||||||||||| || ||||||||||||||| 
seq2  GTG----TTCTGCTGCTGTGTTTCCAGACA-GGATTCTGTGTGTAGCCT-  982

seq1  AATTGCTGTGGACTCACTCTGTAGTCTGGTCTTGAACTCAGAGATC  1040
         |||||| ||||||||||||||||||| |||| |||||||||||
seq2  --ATGCTGT-GACTCACTCTGTAGTCTGG-CTTG-ACTCAGAGATC  1023