BAC Information

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BAC

Clone NameB6Ng01-196M07
Chromosome15 (Build37)6 (Build37)
Map Location 97,609,986 - 97,610,31083,292,098 - 83,293,071
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3
Downstream gene4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M07.bB6Ng01-196M07.g
ACCGA018819GA018820
length885964
definitionB6Ng01-196M07.b B6Ng01-196M07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,609,986 - 97,610,310)(83,292,098 - 83,293,071)
sequence
gaattctccctgtatcttccatctgtctagtgtctgtaccctgcattcaa
gctgtcatctgtctgttgtgtgtgtgtggtgcctgtctgttgtgtgtgtg
tggtgcctgtctgttgtgtgtgtgtggtgcctgtctgttgtgtgtgtgtg
gtgcctgtctgttgtgtgtgtgtggtgcctgtctgttgtgtgtgtgtggt
gcctgtctgttgtgtgtgtgtggtgcctgtctgttgtgtgtgtgtggtgc
ctgtctgttgtgtgtgtgtggtgcctgtctggtgccagtgcctagaaaaa
gcctcagtctgtatttacagaacagcacagaacacatagtatggaaagga
atgaggacttctttatagaaatccttaacagagttttacaagggaaaaaa
gttactttactgaccccaaataacctagaataacactcagaaccacacac
agatattgtctgagttagggtttccgttgctgggaagagacaccatgacc
aaggcaactcttataaaggacaacatttagttggggctggcttacaggtt
cagaggttcagttcattatcatcatggtgggaagcatggcagcgtccaga
caggcatggtggaggacggaagcttgaaagttctacatcttgttcctaag
gcaaacaggagaagactgagtcctcaggaagctaggaggaaggtctcaaa
acccaagcccagagtgacacacttcctccaacaagaccacaccctactcc
aacaagaccacgcttcctaattgtgtcactcccttgtgggccaagcattc
aaacacataagtctatgggagccaaacctatttcaaccaccatagatatt
atcaacctaaatcttcatattgcttcataaaatgg
gaattctgacaccctcaaatcaaaggtccctcttttctctgcatgtgatt
cagggatagaaatgccctctccatgactgagctccaaatggagaagtgct
aagatacggaggaggcagctcactaatggaatataaagcaaagtcttgtt
ggtggaaaagaatgtctccactttttgtggtgtccccctcctctattttc
cttctgtcttttaaaatgagaacagtgctagactcccaagccaacctgcc
ttaatcagtgtgcacacattgcactgttgctcacctctgaggcaaaaacc
cgagaggaggctgtctttctgtctttggctagagggtcgatttgtaacat
ctgaagaaatcagtctgtcctgggtttatctgcctactctcctgctcccc
gcagctggagtcagctgtcctgtctgattctgctccctgaactgtattgc
agtggcttccaattgcctggagaattctgctttagccctgtggtgcttga
acttccaggactttgaaaaatttggatattgggggctggagagatggcac
attgtttaaagaattggctgttcttccgaaggaattaggttcaattccta
gcacctgtatggtggctcataagtgtgtgtaactcaattccagtggatac
aactccctcatacaaacatgcatgcaggacaaacaccaatgcacattaag
ttaaaatagagaagaagaagccttagacatgacagactataaatatagtc
ttgcttccttgtggtacattttttgtgttaacagctactagactgttatt
ctgctgaccgagtaaagtgacttaccagcagccagttagccagctctcat
gacttgtagcaaacaggcacagtcctggtgatgagtttgtactcttggct
ctctctgagcccaagatcaatatagatatagcttctcagactgatgtcat
tactcagcgcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97609986_97610310
seq2: B6Ng01-196M07.b_531_866

seq1  GAAGAGACACCATAACCATGGCAACTCTTATAAAGAAAAACATTTAATTG  50
      ||||||||||||| |||| |||||||||||||||| | |||||||| |||
seq2  GAAGAGACACCATGACCAAGGCAACTCTTATAAAGGACAACATTTAGTTG  50

seq1  GAGCTGGCTTACAGTTTCAGAGGTTCAGTTCATTATCATCAT-AAAGGAA  99
      | |||||||||||| |||||||||||||||||||||||||||    ||||
seq2  GGGCTGGCTTACAGGTTCAGAGGTTCAGTTCATTATCATCATGGTGGGAA  100

seq1  ACATAGAAACAGGATGATGTAGGCAGATGTGGTGCTGGA-GAAAGAGCTG  148
       ||| | | |       |  || |||   |||||  ||| | |||   ||
seq2  GCATGGCAGC------GTCCAGACAGGCATGGTGGAGGACGGAAG-CTTG  143

seq1  AGAGTTTTACATCTTGATC----TGCAGGGAGTAGGAGACTAAGGGCCAC  194
      | |||| ||||||||| ||     |||   || || ||||| | | || |
seq2  AAAGTTCTACATCTTGTTCCTAAGGCAAACAGGAGAAGACTGA-GTCCTC  192

seq1  ACTGGGCATAGCTTAAGCAATATAAAACCTCAAAGCCCGCCCCCACAGTG  244
      |    || |||    || ||  |     |||||| |||   |||| ||||
seq2  AGGAAGC-TAG---GAGGAAGGT-----CTCAAAACCCAAGCCCAGAGTG  233

seq1  ACACACTTCTTCCAACAAGGCCACAC----CTCCTAACAG-CCATGTTCC  289
      ||||||||| ||||||||| ||||||    |||| |  || ||| | | |
seq2  ACACACTTCCTCCAACAAGACCACACCCTACTCCAACAAGACCACGCTTC  283

seq1  CCA-----------------TGGGCCAAGCATTCAAACACAAGAGTCTAT  322
      | |                 |||||||||||||||||||||  |||||||
seq2  CTAATTGTGTCACTCCCTTGTGGGCCAAGCATTCAAACACATAAGTCTAT  333

seq1  GGG  325
      |||
seq2  GGG  336

seq1: chr6_83292098_83293071
seq2: B6Ng01-196M07.g_68_1031

seq1  GAATTCTGACACCCTCAAATCAAAGGTCCCTCTTTTCTCTGCATGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACACCCTCAAATCAAAGGTCCCTCTTTTCTCTGCATGTGATT  50

seq1  CAGGGATAGAAATGCCCTCTCCATGACTGAGCTCCAAATGGAGAAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATAGAAATGCCCTCTCCATGACTGAGCTCCAAATGGAGAAGTGCT  100

seq1  AAGATACGGAGGAGGCAGCTCACTAATGGAATATAAAGCAAAGTCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACGGAGGAGGCAGCTCACTAATGGAATATAAAGCAAAGTCTTGTT  150

seq1  GGTGGAAAAGAATGTCTCCACTTTTTGTGGTGTCCCCCTCCTCTATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAAGAATGTCTCCACTTTTTGTGGTGTCCCCCTCCTCTATTTTC  200

seq1  CTTCTGTCTTTTAAAATGAGAACAGTGCTAGACTCCCAAGCCAACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTTTTAAAATGAGAACAGTGCTAGACTCCCAAGCCAACCTGCC  250

seq1  TTAATCAGTGTGCACACATTGCACTGTTGCTCACCTCTGAGGCAAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTGTGCACACATTGCACTGTTGCTCACCTCTGAGGCAAAAACC  300

seq1  CGAGAGGAGGCTGTCTTTCTGTCTTTGGCTAGAGGGTCGATTTGTAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGAGGCTGTCTTTCTGTCTTTGGCTAGAGGGTCGATTTGTAACAT  350

seq1  CTGAAGAAATCAGTCTGTCCTGGGTTTATCTGCCTACTCTCCTGCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAATCAGTCTGTCCTGGGTTTATCTGCCTACTCTCCTGCTCCCC  400

seq1  GCAGCTGGAGTCAGCTGTCCTGTCTGATTCTGCTCCCTGAACTGTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAGTCAGCTGTCCTGTCTGATTCTGCTCCCTGAACTGTATTGC  450

seq1  AGTGGCTTCCAATTGCCTGGAGAATTCTGCTTTAGCCCTGTGGTGCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTCCAATTGCCTGGAGAATTCTGCTTTAGCCCTGTGGTGCTTGA  500

seq1  ACTTCCAGGACTTTGAAAAATTTGGATATTGGGGGCTGGAGAGATGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGACTTTGAAAAATTTGGATATTGGGGGCTGGAGAGATGGCAC  550

seq1  ATTGTTTAAAGAATTGGCTGTTCTTCCGAAGGAATTAGGTTCAATTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAAAGAATTGGCTGTTCTTCCGAAGGAATTAGGTTCAATTCCTA  600

seq1  GCACCTGTATGGTGGCTCATAAGTGTGTGTAACTCAATTCCAGTGGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTATGGTGGCTCATAAGTGTGTGTAACTCAATTCCAGTGGATAC  650

seq1  AACTCCCTCATACAAACATGCATGCAGGACAAACACCAATGCACATTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTCATACAAACATGCATGCAGGACAAACACCAATGCACATTAAG  700

seq1  TTAAAAAAAGAGAAGAAGAAGCCTTAGACAATGACAGACTATAAAATATA  750
      || |||| ||||||||||||||||||||| |||||||||||| |||||||
seq2  TT-AAAATAGAGAAGAAGAAGCCTTAGAC-ATGACAGACTAT-AAATATA  747

seq1  GTCTTGCTTCCTTGTGGTACATTTTTTGTGTTAACAGCTACTAGACTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTCCTTGTGGTACATTTTTTGTGTTAACAGCTACTAGACTGTT  797

seq1  ATTCTGCTGACCGAGTAAAGTGACTTACCAGCAGCCAGTTAGCCAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTGACCGAGTAAAGTGACTTACCAGCAGCCAGTTAGCCAGCTCT  847

seq1  CCATGACTTGTAGCAAACAGGCACAGTCCTGGTGATGAGGTTTGTACTCT  900
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -CATGACTTGTAGCAAACAGGCACAGTCCTGGTGATGA-GTTTGTACTCT  895

seq1  TGGCTTCTCTCTGAGCCCCAAGATCATATTAGATATAGCTTCTCAGACAT  950
      |||| |||||||||| ||||||||||   ||||||||||||||||||| |
seq2  TGGC-TCTCTCTGAG-CCCAAGATCAATATAGATATAGCTTCTCAGAC-T  942

seq1  GATGTCATTACCTCAAGCGCATAA  974
      |||||||||| ||| |||||||||
seq2  GATGTCATTA-CTC-AGCGCATAA  964