BAC Information

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BAC

Clone NameB6Ng01-196P06
Chromosome6 (Build37)
Map Location 106,984,301 - 106,985,430
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P06.bB6Ng01-196P06.g
ACCGA018954GA018955
length9061,144
definitionB6Ng01-196P06.b B6Ng01-196P06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactttccactgttatgtcttaaaccctttcattcatttcttcc
actgtttgtgttttcatagattttttttaatttattttttttttcattcc
acattctattccctgcaccacatcccatatctcctcccctccccacctgg
gagggaaagtggatagggtgggagggagtgactcctccattgttggtggg
attgcaggcttgtacaaccactctggaaatcagtctggcggttcctcaga
aaattggacatagtactaccggaggatccagcaatacctctcctgggcat
atatccagaagaagccccaactggttaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaaactggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaatttcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagcttgagatg
aaaggatggaccatgttgagactgccatatccagggatccaccccataat
cagcttccaaatgctgacacatgcatactctagcagatttactgaaagga
cccagatgtagctgtctcttgtgagactatgccggggctctagcaaacac
tagaag

ccagtgactggtggtctggtgtaacctccccacccccacccctaaacctg
aaccagacctcgactttgctgccattaaggagattacctagagtggagcc
tgcctccctagatcactctattgttcagccactgttgatgctgctatctg
ctgggagtcggcctaactattccagagactacatcctatcctgcacatgg
tcacctgcagctgggctccaaggatgaattggcagaaatgggtctccccc
actcctttataaagcatgtccaccattaaacattagaaccttgagcagac
tagttgtcttggttccattatttctcgacctgcctaggtctcctcttctc
tttccgctccaggctgcctcccaggctcaaacccagacatgagatccgca
ggctggctccaacaggttggcagtgccttagctccagggatctgatgttg
tatcacagccactgtggttacttgccccacacatgcacatgtccatatgt
agaaaaacatacacataataaaaaataagaatttaaaaacatcagcctct
gatgtgtagtttatttggtcttaggtttcttgaaatatttttatgagtaa
tattagattctatgttgttttcttagcttcttatggcttctgtctatcac
ttttgagtgtacactctccggagtactatttcctatcttctctgttttct
gaatccttagcacatgcttcatccatttagatattccatgagagaaatga
aagattcagaagggaactttctgatttggcacctttcaagcctctgtccg
cctacactgtcatgaatcacacatacttcctagtcaacacttaacctaat
atcttcattgagctatttagagatctttcgacaatctttccatctttctc
atatgactatatcccatgcctgctaggtatttcctcatcaacatcttaaa
atcctcttactttccagcctttcaaactagcaacctcctcttgactgctt
cattcacagaggtagttctttttttctttgtcttttcccttttctttttt
ctttggcatcggagtttaccatagcacagccttcttaaaggagtgttcct
gtgccttcactccggtttgttccgtttgtccggcctaaatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106984301_106985430
seq2: B6Ng01-196P06.g_103_1226

seq1  GTAACCTCCCCACCCCCACCCCTAAACCTGAACCAGACCTCGACTTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCCCCACCCCCACCCCTAAACCTGAACCAGACCTCGACTTTGCT  50

seq1  GCCATTAAGGAGATTACCTAGAGTGGAGCCTGCCTCCCTAGATCACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAAGGAGATTACCTAGAGTGGAGCCTGCCTCCCTAGATCACTCTA  100

seq1  TTGTTCAGCCACTGTTGATGCTGCTATCTGCTGGGAGTCGGCCTAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGCCACTGTTGATGCTGCTATCTGCTGGGAGTCGGCCTAACTAT  150

seq1  TCCAGAGACTACATCCTATCCTGCACATGGTCACCTGCAGCTGGGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACTACATCCTATCCTGCACATGGTCACCTGCAGCTGGGCTCCA  200

seq1  AGGATGAATTGGCAGAAATGGGTCTCCCCCACTCCTTTATAAAGCATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAATTGGCAGAAATGGGTCTCCCCCACTCCTTTATAAAGCATGTC  250

seq1  CACCATTAAACATTAGAACCTTGAGCAGACTAGTTGTCTTGGTTCCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAAACATTAGAACCTTGAGCAGACTAGTTGTCTTGGTTCCATTA  300

seq1  TTTCTCGACCTGCCTAGGTCTCCTCTTCTCTTTCCGCTCCAGGCTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGACCTGCCTAGGTCTCCTCTTCTCTTTCCGCTCCAGGCTGCCTC  350

seq1  CCAGGCTCAAACCCAGACATGAGATCCGCAGGCTGGCTCCAACAGGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCAAACCCAGACATGAGATCCGCAGGCTGGCTCCAACAGGTTGG  400

seq1  CAGTGCCTTAGCTCCAGGGATCTGATGTTGTATCACAGCCACTGTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTAGCTCCAGGGATCTGATGTTGTATCACAGCCACTGTGGTTA  450

seq1  CTTGCCCCACACATGCACATGTCCATATGTAGAAAAACATACACATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCACACATGCACATGTCCATATGTAGAAAAACATACACATAATA  500

seq1  AAAAATAAGAATTTAAAAACATCAGCCTCTGATGTGTAGTTTATTTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGAATTTAAAAACATCAGCCTCTGATGTGTAGTTTATTTGGTC  550

seq1  TTAGGTTTCTTGAAATATTTTTATGAGTAATATTAGATTCTATGTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCTTGAAATATTTTTATGAGTAATATTAGATTCTATGTTGTTT  600

seq1  TCTTAGCTTCTTATGGCTTCTGTCTATCACTTTTGAGTGTACACTCTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTTCTTATGGCTTCTGTCTATCACTTTTGAGTGTACACTCTCCG  650

seq1  GAGTACTATTTCCTATCTTCTCTGTTTTCTGAATCCTTAGCACATGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTATTTCCTATCTTCTCTGTTTTCTGAATCCTTAGCACATGCTTC  700

seq1  ATCCATTTAGATATTCCATGAGAGAAATGAAAGATTCAGAAGGGAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTAGATATTCCATGAGAGAAATGAAAGATTCAGAAGGGAACTTT  750

seq1  CTGATTTGGCACC-TTCAAGCCTCTGTCCGCCTACACTGTCATGAATCAC  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGGCACCTTTCAAGCCTCTGTCCGCCTACACTGTCATGAATCAC  800

seq1  ACATACTTCCTAGTCAACACTTAACCTAATATCTTCATTGAGCTATTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCCTAGTCAACACTTAACCTAATATCTTCATTGAGCTATTTAG  850

seq1  AGATCTTTCGACAATCTTTCCATCTTTCTCATATGACTATATCCCATGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTCGACAATCTTTCCATCTTTCTCATATGACTATATCCCATGCC  900

seq1  TGCTAGGTATTT-CTCATCAACATCTTAAAATCCTCTTAACTTTCCAGCC  948
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TGCTAGGTATTTCCTCATCAACATCTTAAAATCCTCTT-ACTTTCCAGCC  949

seq1  TTCAAAACTAGCAAACTCCTCTTGACTGCTTCATTCACAGAGGTAGTTCT  998
      ||  |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTAGCAACCTCCTCTTGACTGCTTCATTCACAGAGGTAGTTCT  999

seq1  TTTTTTTTCTTTTTTCTTTTTCCTTTTTTCTTTTTTTTCTTTTGCATCTG  1048
      ||||||    ||| |||||| |||||    | |||||||||| ||||| |
seq2  TTTTTT---CTTTGTCTTTTCCCTTT----TCTTTTTTCTTTGGCATCGG  1042

seq1  AGTTTTACCATAGCACAG-CTTCTTAAAAGGAGTGT--CTGTGCCTTCCA  1095
      || ||||||||||||||| |||||| ||||||||||  ||||||||| ||
seq2  AG-TTTACCATAGCACAGCCTTCTT-AAAGGAGTGTTCCTGTGCCTT-CA  1089

seq1  CTTCTGTTTGTTCTCTTTTTGTCGGCTAAATCTAG  1130
      || | ||||||||  ||| |   | ||||||||||
seq2  CTCCGGTTTGTTCCGTTTGTCCGGCCTAAATCTAG  1124


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