BAC Information

Click to search

BAC

Clone NameB6Ng01-198I02
Chromosome6 (Build37)
Map Location 57,642,732 - 57,643,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy
Downstream geneLancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198I02.bB6Ng01-198I02.g
ACCGA020084GA020085
length1,2021,117
definitionB6Ng01-198I02.b B6Ng01-198I02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgacttctttatatatattggatattagtccc
ctatccaatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccgtttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatgtttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataactgccagttgtgccagcaccatttgttgaaatt
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattaccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttttagagacttgaagtttcttatca
tacagatcttttcactttcctttagttagagtcacgccaaaggtatttat
attatttgttgactattgagaaggggtgttgttttccctaatttctttct
tcagcctgttttatccctttgttgtacaggaaaggaccatgactttggtg
tgagttaattttattatccaggcctacttcattgaagctgttatccagcc
ttaaggagtttctctggtgaaatttttcaggatcacttaataataggatt
catatcatctgcaaagcgaacttttgaactttctttcgctttccaaatgt
gc
gaattcaagatccctagtggtagggatcatcaggatagaaaatccacagt
gcagcccatggacaactgcaagacactcttggccactatcgtaacagtgt
cctccaacttcccttggccgtagtaaagactgggaaggcaaaggagagag
tttgagatggaaaggtggcatcaggaacagagatgaaattatttagggag
tggaactagataccaccccacaccaacccccacaccacatcactgcttag
ccctgggaagtgagaacatgaagaaaggagagtcatcccaggtgctctaa
ctacagcagtctaacttcagagtgcttaatgcatgtttaacgctcagaag
tgagtgatttatgctataactcacaactaaaatagcctaaccttcattgc
ttctgggggctgctcagaaattgtttttgtttgttttttgtttttgtttt
aattgacaagttaggaaacacagggacctggaagatccatttccgcttca
cccagtaagaaactagtccaactggctctcagcctacacccagctcacag
ctgtagagacattagctctaaattgttttattgttttaaaaagatgtttt
acaacttaggacagtgcagggtaggcaagccttctgctgagtcccactca
tggccttaatgttagcattcttgccatttccttccacgctccctcatcat
ctgggtgacctccagagaccagtgtttttgcaaggatatcagagagcttt
gcatacatcttgggacaggaggagcctgggctggagaaagcaggtatgca
gaggagacatctgtaaggtcagagttatcttttgccagaagttcagctaa
gtgacttcctgcctttcttgttcctgcccttttgtcccttccctcatagg
tcacatatagtggcaaagctttgaggcaagaacatgtgtactttttcaag
agctcaaaggacgaacattgacaagatttcagtagccattatgggttcca
gcagacagctaaagtctcctcagaagtgcagcacctccagaggccttcta
cacattaactcatctcagctgctctgtttgacttcagaacattccggcct
gcacttcaaagccaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57642732_57643849
seq2: B6Ng01-198I02.g_64_1180 (reverse)

seq1  AGTTTGCTTTGAGTCGCAGGCGGGAATG-TCTGAAAGTCAAACAGAGGCA  49
      |||| |||||||   |||||| |||||| |||| |||||||||||| |||
seq2  AGTTGGCTTTGAAGTGCAGGCCGGAATGTTCTG-AAGTCAAACAGA-GCA  48

seq1  GCTGAGATTGAGTTAATGTGTAGGAAAGGCCTCTGGA-GTGCTGGCACTT  98
      ||||||| |||||||||||||||  |||||||||||| ||||| ||||||
seq2  GCTGAGA-TGAGTTAATGTGTAG--AAGGCCTCTGGAGGTGCT-GCACTT  94

seq1  CTGAGG-GGCTTTAGCTGTCTGCTGGGAACCCAT-ATGGCTACTGAAATC  146
      |||||| | ||||||||||||||| ||||||||| |||||||||||||||
seq2  CTGAGGAGACTTTAGCTGTCTGCT-GGAACCCATAATGGCTACTGAAATC  143

seq1  TTGTCAATGTTCGTCCTTTGAGCTCTTG-AAAAGTACACATGTTC-TGCC  194
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TTGTCAATGTTCGTCCTTTGAGCTCTTGAAAAAGTACACATGTTCTTGCC  193

seq1  TCAAAGCTTTGCCACTATATGTGACCTATGAGGGAAGGGACAAAAGGGCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTTGCCACTATATGTGACCTATGAGGGAAGGGACAAAAGGGCA  243

seq1  GGAACAAGAAAGGCAGGAAGTCACTTAGCTGAACTTCTGGCAAAAGATAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGAAAGGCAGGAAGTCACTTAGCTGAACTTCTGGCAAAAGATAA  293

seq1  CTCTGACCTTACAGATGTCTCCTCTGCATACCTGCTTTCTCCAGCCCAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTTACAGATGTCTCCTCTGCATACCTGCTTTCTCCAGCCCAGG  343

seq1  CTCCTCCTGTCCCAAGATGTATGCAAAGCTCTCTGATATCCTTGCAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTGTCCCAAGATGTATGCAAAGCTCTCTGATATCCTTGCAAAAA  393

seq1  CACTGGTCTCTGGAGGTCACCCAGATGATGAGGGAGCGTGGAAGGAAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTCTGGAGGTCACCCAGATGATGAGGGAGCGTGGAAGGAAATG  443

seq1  GCAAGAATGCTAACATTAAGGCCATGAGTGGGACTCAGCAGAAGGCTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGCTAACATTAAGGCCATGAGTGGGACTCAGCAGAAGGCTTGC  493

seq1  CTACCCTGCACTGTCCTAAGTTGTAAAACATCTTTTTAAAACAATAAAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGCACTGTCCTAAGTTGTAAAACATCTTTTTAAAACAATAAAAC  543

seq1  AATTTAGAGCTAATGTCTCTACAGCTGTGAGCTGGGTGTAGGCTGAGAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAGCTAATGTCTCTACAGCTGTGAGCTGGGTGTAGGCTGAGAGC  593

seq1  CAGTTGGACTAGTTTCTTACTGGGTGAAGCGGAAATGGATCTTCCAGGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGACTAGTTTCTTACTGGGTGAAGCGGAAATGGATCTTCCAGGTC  643

seq1  CCTGTGTTTCCTAACTTGTCAATTAAAACAAAAACAAAAAACAAACAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTTCCTAACTTGTCAATTAAAACAAAAACAAAAAACAAACAAAA  693

seq1  ACAATTTCTGAGCAGCCCCCAGAAGCAATGAAGGTTAGGCTATTTTAGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTGAGCAGCCCCCAGAAGCAATGAAGGTTAGGCTATTTTAGTT  743

seq1  GTGAGTTATAGCATAAATCACTCACTTCTGAGCGTTAAACATGCATTAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTATAGCATAAATCACTCACTTCTGAGCGTTAAACATGCATTAAG  793

seq1  CACTCTGAAGTTAGACTGCTGTAGTTAGAGCACCTGGGATGACTCTCCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGAAGTTAGACTGCTGTAGTTAGAGCACCTGGGATGACTCTCCTT  843

seq1  TCTTCATGTTCTCACTTCCCAGGGCTAAGCAGTGATGTGGTGTGGGGGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTTCTCACTTCCCAGGGCTAAGCAGTGATGTGGTGTGGGGGTT  893

seq1  GGTGTGGGGTGGTATCTAGTTCCACTCCCTAAATAATTTCATCTCTGTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGTGGTATCTAGTTCCACTCCCTAAATAATTTCATCTCTGTTC  943

seq1  CTGATGCCACCTTTCCATCTCAAACTCTCTCCTTTGCCTTCCCAGTCTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCACCTTTCCATCTCAAACTCTCTCCTTTGCCTTCCCAGTCTTT  993

seq1  ACTACGGCCAAGGGAAGTTGGAGGACACTGTTACGATAGTGGCCAAGAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGGCCAAGGGAAGTTGGAGGACACTGTTACGATAGTGGCCAAGAGT  1043

seq1  GTCTTGCAGTTGTCCATGGGCTGCACTGTGGATTTTCTATCCTGATGATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGTTGTCCATGGGCTGCACTGTGGATTTTCTATCCTGATGATC  1093

seq1  CCTACCACTAGGGATCTTGAATTC  1118
      ||||||||||||||||||||||||
seq2  CCTACCACTAGGGATCTTGAATTC  1117