BAC Information

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BAC

Clone NameB6Ng01-198K06
Chromosome6 (Build37)
Map Location 66,681,103 - 66,861,786
singlet/doubletdoublet
Overlap geneV1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12
Upstream geneLOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11
Downstream geneLOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198K06.bB6Ng01-198K06.g
ACCGA020185GA020186
length1,099736
definitionB6Ng01-198K06.b B6Ng01-198K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,860,702 - 66,861,786)(66,681,103 - 66,681,834)
sequence
gaattcaaatagtccacatgcctttcctgaaagtcacagataaattaaat
gtgctggacatgaatttcatgttaagcatgaaaacaatttctcataaaaa
ctggaagtccacgtggccttcaaagaacaatttgctcctatactccatgt
tatagcaaggtggtcaagagttaaccctcaatgtctcagaatattaaaac
cctgtcttctctggaaaaatacttgctgacctgcctcagagcctcagctg
atggcactcggaactgtgggcctcacctgtgctgagctgtggtgtgtgga
aatggaaacagacagtattcctctgagggcattctgttttgttcctccac
aagaggatgcagtaacaatttaaatgtagaagtttctggtttgaccccac
cccctttaatgggtggattacacaaggcctgacaaatttcaaggaagggg
cttgcatggatctgtgctcaaaggctcctcggagacctcatatgtagatg
agaaaaccaaatggaattcctgactcttgagcagccagggactgattctg
tcctgacacagagcagaattcatctggcaccctacaaggttcttacactg
aacctcgcttgagctccacaggggcactgcctttggatcacacccagaag
ggctgactccacaggtctgggtgcggttgggtgtcgtgatttttcagtca
ctcccagtttgacaagcgtgtgacccacaccctgggaacttttggcttca
ggaaagctgttggatcctactccctgagcaccgctttctctctaactaaa
cgacacactttaaaggaacacaatgtcaaacactcttcaactgtttcaag
tcaggagggtttaggtcagagcccttcctgtgtgcgcagccctcccctct
gcctgcctacacaataaagattacaacaccaagtgagttgagtaagcaga
gcgcatgcttcccagcagaaggtaaaatgggaatgcttcttgataggaca
gaatgcttgtgtacctaagaagcagtctgtgcagcctcccctggcccttt
ggaacttctcccacatggcttttcattccctttgaagctccacctggct
gaattccaaagatgggaggtgggagttggtggttgggtcaaggagtatta
tcatagaagcagagtgagggaggatggaatactgggtttctggaaaggaa
actgaaaaggggataacatttgaaatgtaagtaaataaattatccaataa
aaataagtatctaaaacagaacaatgatgtagatatactaaccagagaat
cataagtttgatgtatctaatattttttcagatattccaaatatgcttcc
tctatgtgcttaagatgaatacactttctgattatgttttcattaaataa
tatccttaattttcaaactgggcttggagctatagccaatatatttcttc
tttttttctacactatgataatcctgtgtcacacatctaaacccatggac
atgatctcctttcacttgaccttcattcacataatgatgtttctcactgg
agggcatgcttggcttaaagatctcttagggtcattgaacattggcaatg
acttcatatgtaaggcaactgcttacataaacagagtgatgagaggcttc
tctatctgcatcacctgcctcctgagtgtgttccaggctgtgacgatcac
cccaatacctctttgttggcaaaatctaaacataaactaaaaaaaataca
tgatctattctttcttcgattttttggactgtcactttgctattcaccat
taaccggaatcatcttttactggcgcttataccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66860702_66861786
seq2: B6Ng01-198K06.b_46_1144 (reverse)

seq1  AGCCAGGTGGAGCT---CAGGGGATGGAAAGCCATGT-GGAGAAG-TCCA  45
      ||||||||||||||    |||| ||| |||||||||| ||||||| ||||
seq2  AGCCAGGTGGAGCTTCAAAGGGAATGAAAAGCCATGTGGGAGAAGTTCCA  50

seq1  AAGGG-CAGGGGAGGCTGCCACAGACTGCTTCTT-GGTACACAAGCCTTC  93
      ||||| |||||||||||| ||||||||||||||| ||||||||||| |||
seq2  AAGGGCCAGGGGAGGCTG-CACAGACTGCTTCTTAGGTACACAAGCATTC  99

seq1  TGTCCTCTCA--GAGCATTCCC-TTTTACCTTCTGCTGGGAAGCATGCGC  140
      |||||| |||   ||||||||| |||||||||||||||||||||||||||
seq2  TGTCCTATCAAGAAGCATTCCCATTTTACCTTCTGCTGGGAAGCATGCGC  149

seq1  TCTGCTTACTC-ACTCACTTGGTGTTGTAATCTTTATTGTGTAGGCAGGC  189
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTACTCAACTCACTTGGTGTTGTAATCTTTATTGTGTAGGCAGGC  199

seq1  AGAGGGGAGGGCTGCGCACACAGGAA-GGCTCTGACCTTAACCCTCCTGA  238
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  AGAGGGGAGGGCTGCGCACACAGGAAGGGCTCTGACCTAAACCCTCCTGA  249

seq1  CTTGAAACAGTTGAAGAGTGTTTGACATTGTGTTCCTTT-AAGTGTGTCG  287
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGAAACAGTTGAAGAGTGTTTGACATTGTGTTCCTTTAAAGTGTGTCG  299

seq1  TTTAGTTAGAGAGAAAGCGGTGCTCAGGGAGTAGGATCCAACAGCTTTCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGAGAGAAAGCGGTGCTCAGGGAGTAGGATCCAACAGCTTTCC  349

seq1  TGAAGCC-AAAGTTCCCAGGGTGTGGGTCACACGCTTGTC-AACTGGGAG  385
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TGAAGCCAAAAGTTCCCAGGGTGTGGGTCACACGCTTGTCAAACTGGGAG  399

seq1  TGACTGAAAAATCACGACACCCAACCGCACCCAGACCTGTGGAGTCAGCC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAAAATCACGACACCCAACCGCACCCAGACCTGTGGAGTCAGCC  449

seq1  CTTCTGGGTGTGATCCAAAGGCAGTGCCCCTGTGGAGCTCAAGCGAGGTT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTGTGATCCAAAGGCAGTGCCCCTGTGGAGCTCAAGCGAGGTT  499

seq1  CAGTGTAAGAACCTTGTAGGGTGCCAGATGAATTCTGCTCTGTGTCAGGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAGAACCTTGTAGGGTGCCAGATGAATTCTGCTCTGTGTCAGGA  549

seq1  CAGAATCAGTCCCTGGCTGCTCAAGAGTCAGGAATTCCATTTGGTTTTCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGTCCCTGGCTGCTCAAGAGTCAGGAATTCCATTTGGTTTTCT  599

seq1  CATCTACATATGAGGTCTCCGAGGAGCCTTTGAGCACAGATCCATGCAAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATATGAGGTCTCCGAGGAGCCTTTGAGCACAGATCCATGCAAG  649

seq1  CCCCTTCCTTGAAATTTGTCAGGCCTTGTGTAATCCACCCATTAAAGGGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTTGAAATTTGTCAGGCCTTGTGTAATCCACCCATTAAAGGGG  699

seq1  GTGGGGTCAAACCAGAAACTTCTACATTTAAATTGTTACTGCATCCTCTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCAAACCAGAAACTTCTACATTTAAATTGTTACTGCATCCTCTT  749

seq1  GTGGAGGAACAAAACAGAATGCCCTCAGAGGAATACTGTCTGTTTCCATT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAACAAAACAGAATGCCCTCAGAGGAATACTGTCTGTTTCCATT  799

seq1  TCCACACACCACAGCTCAGCACAGGTGAGGCCCACAGTTCCGAGTGCCAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACCACAGCTCAGCACAGGTGAGGCCCACAGTTCCGAGTGCCAT  849

seq1  CAGCTGAGGCTCTGAGGCAGGTCAGCAAGTATTTTTCCAGAGAAGACAGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGCTCTGAGGCAGGTCAGCAAGTATTTTTCCAGAGAAGACAGG  899

seq1  GTTTTAATATTCTGAGACATTGAGGGTTAACTCTTGACCACCTTGCTATA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATATTCTGAGACATTGAGGGTTAACTCTTGACCACCTTGCTATA  949

seq1  ACATGGAGTATAGGAGCAAATTGTTCTTTGAAGGCCACGTGGACTTCCAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGTATAGGAGCAAATTGTTCTTTGAAGGCCACGTGGACTTCCAG  999

seq1  TTTTTATGAGAAATTGTTTTCATGCTTAACATGAAATTCATGTCCAGCAC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGAGAAATTGTTTTCATGCTTAACATGAAATTCATGTCCAGCAC  1049

seq1  ATTTAATTTATCTGTGACTTTCAGGAAAGGCATGTGGACTATTTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTATCTGTGACTTTCAGGAAAGGCATGTGGACTATTTGAATTC  1099

seq1: chr6_66681103_66681834
seq2: B6Ng01-198K06.g_66_800

seq1  GAATTCCAAAGATGGGAGGTGGGAGTTGGTGGTTGGGTCAAGGAGTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATGGGAGGTGGGAGTTGGTGGTTGGGTCAAGGAGTATTA  50

seq1  TCATAGAAGCAGAGTGAGGGAGGATGGAATACTGGGTTTCTGGAGAGGAA  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATAGAAGCAGAGTGAGGGAGGATGGAATACTGGGTTTCTGGAAAGGAA  100

seq1  ACTGAAAAGGGGATAACATTTGAAATGTAAGTAAATAAATTATCCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGGGGATAACATTTGAAATGTAAGTAAATAAATTATCCAATAA  150

seq1  AAATAAGTATCTAAAACAGAACAATGATGTAGATATACTAACCAGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTATCTAAAACAGAACAATGATGTAGATATACTAACCAGAGAAT  200

seq1  CATAAGTTTGATGTATCTAATATTTTTTCAGATATTCGAAATATGCTTCC  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAAGTTTGATGTATCTAATATTTTTTCAGATATTCCAAATATGCTTCC  250

seq1  TCTATGTGCTTAAGATGAATACACTTTCTGATTATGTTTTCATTAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGCTTAAGATGAATACACTTTCTGATTATGTTTTCATTAAATAA  300

seq1  TATCCTTAATTTTCAAACTGGGCTTGGAGCTATAGCCAATATATTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAATTTTCAAACTGGGCTTGGAGCTATAGCCAATATATTTCTTC  350

seq1  TTTTTTTCTACACTATGATAATCCTGTGTCACAGATCTAAGCCCATGGAC  400
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TTTTTTTCTACACTATGATAATCCTGTGTCACACATCTAAACCCATGGAC  400

seq1  ATGATCTCCTTTCAGTTGACCTTCATTCACATAATGATGTTTCTCACTGG  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGATCTCCTTTCACTTGACCTTCATTCACATAATGATGTTTCTCACTGG  450

seq1  AGGGCATGCTTGGCTTAAAGATTTCTTAGGGTCATTGAACATTGGCAATG  500
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGGCATGCTTGGCTTAAAGATCTCTTAGGGTCATTGAACATTGGCAATG  500

seq1  ACTTCATATGTAAGGCAACTGCTTACATAAACAGAGTGATGAGAGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTCATATGTAAGGCAACTGCTTACATAAACAGAGTGATGAGAGGCTTC  550

seq1  TCTATCTGCATCACCTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTATCTGCATCACCTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCA-  599

seq1  TCCCAATACCTCTTTGTTGGCAAAATTTAAACATAAACT-AAAAAAATAC  649
       ||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CCCCAATACCTCTTTGTTGGCAAAATCTAAACATAAACTAAAAAAAATAC  649

seq1  ATGATCTATTCTTTCTTCTA-TTTTTGGTCTTTCAATTTGTCATTCAGCA  698
      |||||||||||||||||| | ||||||| || ||| ||||  ||||| ||
seq2  ATGATCTATTCTTTCTTCGATTTTTTGGACTGTCACTTTGCTATTCACCA  699

seq1  TTAACCGG-ATCATC-TATACTGGCGCTTATACCAA  732
      |||||||| |||||| | ||||||||||||||||||
seq2  TTAACCGGAATCATCTTTTACTGGCGCTTATACCAA  735