BAC Information

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BAC

Clone NameB6Ng01-199B05
Chromosome6 (Build37)
Map Location 37,353,256 - 37,486,589
singlet/doubletdoublet
Overlap geneCreb3l2, Akr1d1
Upstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
Downstream geneLOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B05.bB6Ng01-199B05.g
ACCGA020505GA020506
length9301,050
definitionB6Ng01-199B05.b B6Ng01-199B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,485,650 - 37,486,589)(37,353,256 - 37,354,298)
sequence
gaattccacaagtaaatgccatcctcagactccgccttggttttggcgtc
acaaatctgatccctgtgtttagtcgtctcctgttgatggggatgaaagg
taagactttttaaaaattattattatattatgtactttgctctgtgatat
gtgaagacacttttatggctgtgggcttcgaagatggatatgtctagata
ctgttcaactaaaatgtggagcaccgtgttattttgatggaaaactacag
ttgttaaaacatgtatcacagaaaccgcattgagttcagaaacgtgggcc
caaacctgtaagcattatctgttgattttttgtcaggcaaggtcagtatc
ctcccatctatggtagcaaacattatagcattcagtgctactaaagaatg
atcaatatgaaatagagctctaaactttaggtacttaggcttaccttaaa
ggccatgggcagttcgataatataaaggtctatgtaatctagtttgaggg
cctttagcgtcctttccagggctgggaggaccattgatgggacatgctct
gtattccataactgcaaagaaagtcatgaaggatagtgaaagactaccta
cgacttccacattcacatagcaaaaccctcacacacatgtcatctgctcc
tttacatcacagaagcatggttacacttgagggtaggaagactcaatgag
tctcttgacaccgccatgacaatccactgttccacagtctcatttggtgt
cacaccccagggcaattttgcctaccattgctaaagctttactctgagtt
caaagtgttggatggtggatgagtaaaggccaagtttccatgccaatgca
gaaaacagagtggtaatcagataaaccagtacattttcttatagcataaa
ttttattccaaaactttgtgtgtgtgtgtg
gaattcctcgaaggaacacctaaacccatgaggggcagctgttgcagcat
gcagttcattgtgaggatttcaatccatcataaaagaaatgatctggttt
caaaactaaagagaaagtaagaaagaaagagaagaaagaaaaacaaagcc
agaatagtcaagaagccagaaaagaaggaaagaagagaagaaagaaaaaa
cagtatttcggagggaataattaacaaataactccactcaagtttttaat
atataactttgttctcttatctttacatttaaaaaaaactctgaagtatt
gcaaataaaactagaaacttctgacagaacctgttcacagagaagtaatg
tcccccaggccatctggagggcacagccagattccagccttccttgatat
gtggataatttatcttctcacctagtgtacttttgagtcccttgaaacga
tcatcagtttgatacttaaaacactggccaagccccaagagttcaggact
cagattttactgtcatgctatactaacggacacacgacaaagtgggctcc
caaatgccttgtaagtatttataaatgctttaccagatctgtggagatta
agttaaaagatggcaattggaagtaaataaaatctcagtaccgtatggtt
tcgatatctgaacctttgttttcattataaaacatcttcaagttactggt
cgtctggcttacttgcgacattttctggggggcagcatctggctgtcact
ccaactaccactttgtgtgtgtgtttcatccccatccctcctgacgtgaa
gtctcatgtttgtctctgtttcttcccatcccccactctgctccagtcta
gtgtgatggagagatttgaaaggtcaccaaacctccctgccgtggacaca
ctgtggaaatgattttgttccttttcatctcctgcaaactttcttctgac
tttcacaacacaagccttttcccattcacatgcttgttgcaccccaaatg
tgtaccaagtcaccctttcttccttcacctccgttctctttctcttctcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37485650_37486589
seq2: B6Ng01-199B05.b_47_976 (reverse)

seq1  CACACACACACACACACACACACAAAAGTTTTGGAATAAAATTTATGCTA  50
                ||||||||||||| ||||||||||||||||||||||||||
seq2  ----------CACACACACACAC-AAAGTTTTGGAATAAAATTTATGCTA  39

seq1  TAAGAAAATGTACTGGTTTATCTGATTACCACTCTGTTTTCTGCATTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATGTACTGGTTTATCTGATTACCACTCTGTTTTCTGCATTGGC  89

seq1  ATGGAAACTTGGCC-TTACTCATCCACCATCCAACACTTTGAACTCAGAG  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTTGGCCTTTACTCATCCACCATCCAACACTTTGAACTCAGAG  139

seq1  TAAAGCCTTAGCAATGGTAGGCAAAATTGCCCTGGGGTGTGACACCAAAT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTAGCAATGGTAGGCAAAATTGCCCTGGGGTGTGACACCAAAT  189

seq1  GAGACTGTGGAACAGTGGATTGTCATGGCGGTGTCAAGAGACTCATTGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTGGAACAGTGGATTGTCATGGCGGTGTCAAGAGACTCATTGAG  239

seq1  TCTTCCTACCCTCAAGTGTAACCATGCTTCTGTGATGTAAAGGAGCAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTACCCTCAAGTGTAACCATGCTTCTGTGATGTAAAGGAGCAGAT  289

seq1  GACATGTGTGTGAGGGTTTTGCTATGTGAATGTGGAAGTCGTAGGTAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGTGTGAGGGTTTTGCTATGTGAATGTGGAAGTCGTAGGTAGTC  339

seq1  TTTCACTATCCTTCATGACTTTCTTTGCAGTTATGGAATACAGAGCATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATCCTTCATGACTTTCTTTGCAGTTATGGAATACAGAGCATGT  389

seq1  CCCATCAATGGTCCTCCCAGCCCTGGAAAGGACGCTAAAGGCCCTCAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAATGGTCCTCCCAGCCCTGGAAAGGACGCTAAAGGCCCTCAAAC  439

seq1  TAGATTACATAGACCTTTATATTATCGAACTGCCCATGGCCTTTAAGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTACATAGACCTTTATATTATCGAACTGCCCATGGCCTTTAAGGTA  489

seq1  AGCCTAAGTACCTAAAGTTTAGAGCTCTATTTCATATTGATCATTCTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGTACCTAAAGTTTAGAGCTCTATTTCATATTGATCATTCTTTA  539

seq1  GTAGCACTGAATGCTATAATGTTTGCTACCATAGATGGGAGGATACTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTGAATGCTATAATGTTTGCTACCATAGATGGGAGGATACTGAC  589

seq1  CTTGCCTGACAAAAAATCAACAGATAATGCTTACAGGTTTGGGCCCACGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGACAAAAAATCAACAGATAATGCTTACAGGTTTGGGCCCACGT  639

seq1  TTCTGAACTCAATGCGGTTTCTGTGATACATGTTTTAACAACTGTAGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTCAATGCGGTTTCTGTGATACATGTTTTAACAACTGTAGTTT  689

seq1  TCCATCAAAATAACACGGTGCTCCACATTTTAGTTGAACAGTATCTAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAAATAACACGGTGCTCCACATTTTAGTTGAACAGTATCTAGAC  739

seq1  ATATCCATCTTCGAAGCCCACAGCCATAAAAGTGTCTTCACATATCACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATCTTCGAAGCCCACAGCCATAAAAGTGTCTTCACATATCACAG  789

seq1  AGCAAAGTACATAATATAATAATAATTTTTAAAAAGTCTTACCTTTCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTACATAATATAATAATAATTTTTAAAAAGTCTTACCTTTCATC  839

seq1  CCCATCAACAGGAGACGACTAAACACAGGGATCAGATTTGTGACGCCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAACAGGAGACGACTAAACACAGGGATCAGATTTGTGACGCCAAA  889

seq1  ACCAAGGCGGAGTCTGAGGATGGCATTTACTTGTGGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCGGAGTCTGAGGATGGCATTTACTTGTGGAATTC  930

seq1: chr6_37353256_37354298
seq2: B6Ng01-199B05.g_62_1111

seq1  GAATTCCTCGAAGGAACACCTAAACCCATGAGGGGCAGCTGTTGCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGAAGGAACACCTAAACCCATGAGGGGCAGCTGTTGCAGCAT  50

seq1  GCAGTTCATTGTGAGGATTTCAATCCATCATAAAAGAAATGATCTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCATTGTGAGGATTTCAATCCATCATAAAAGAAATGATCTGGTTT  100

seq1  CAAAACTAAAGAGAAAGTAAGAAAGAAAGAGAAGAAAGAAAAACAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAAGAGAAAGTAAGAAAGAAAGAGAAGAAAGAAAAACAAAGCC  150

seq1  AGAATAGTCAAGAAGCCAGAAAAGAAGGAAAGAAGAGAAGAAAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCAAGAAGCCAGAAAAGAAGGAAAGAAGAGAAGAAAGAAAAAA  200

seq1  CAGTATTTCGGAGGGAATAATTAACAAATAACTCCACTCAAGTTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTCGGAGGGAATAATTAACAAATAACTCCACTCAAGTTTTTAAT  250

seq1  ATATAACTTTGTTCTCTTATCTTTACATTTAAAAAAAACTCTGAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTTGTTCTCTTATCTTTACATTTAAAAAAAACTCTGAAGTATT  300

seq1  GCAAATAAAACTAGAAACTTCTGACAGAACCTGTTCACAGAGAAGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAAACTAGAAACTTCTGACAGAACCTGTTCACAGAGAAGTAATG  350

seq1  TCCCCCAGGCCATCTGGAGGGCACAGCCAGATTCCAGCCTTCCTTGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGGCCATCTGGAGGGCACAGCCAGATTCCAGCCTTCCTTGATAT  400

seq1  GTGGATAATTTATCTTCTCACCTAGTGTACTTTTGAGTCCCTTGAAACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAATTTATCTTCTCACCTAGTGTACTTTTGAGTCCCTTGAAACGA  450

seq1  TCATCAGTTTGATACTTAAAACACTGGCCAAGCCCCAAGAGTTCAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTTTGATACTTAAAACACTGGCCAAGCCCCAAGAGTTCAGGACT  500

seq1  CAGATTTTACTGTCATGCTATACTAACGGACACACGACAAAGTGGGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTACTGTCATGCTATACTAACGGACACACGACAAAGTGGGCTCC  550

seq1  CAAATGCCTTGTAAGTATTTATAAATGCTTTACCAGATCTGTGGAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTTGTAAGTATTTATAAATGCTTTACCAGATCTGTGGAGATTA  600

seq1  AGTTAAAAGATGGCAATTGGAAGTAAATAAAATCTCAGTACCGTATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGATGGCAATTGGAAGTAAATAAAATCTCAGTACCGTATGGTT  650

seq1  TCGATATCTGAACCTTTGTTTTCATTATAAAACATCTTCAAGTTACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATCTGAACCTTTGTTTTCATTATAAAACATCTTCAAGTTACTGGT  700

seq1  CGTCTGGCTTACTTGCGACATTTTCT-GGGGGCAGCATCTGGCTGTCACT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGTCTGGCTTACTTGCGACATTTTCTGGGGGGCAGCATCTGGCTGTCACT  750

seq1  CCAACTACCACTTTGTGTGTGTGTTTCATCCCCATCCCTCCTGACGTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACCACTTTGTGTGTGTGTTTCATCCCCATCCCTCCTGACGTGAA  800

seq1  GTCTCATGTTTGTCTCTGTTTCTTCCCATCCCCCACTCTGCTCCAGTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGTTTGTCTCTGTTTCTTCCCATCCCCCACTCTGCTCCAGTCTA  850

seq1  GTGTGATGGAGAGATTTG-AAGGTCACCAAACCTCCCTGCCGTGGACACA  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGATGGAGAGATTTGAAAGGTCACCAAACCTCCCTGCCGTGGACACA  900

seq1  CTGTGG-AATGATTTTGTTCC-TTTCATCTCCTGCAAAACTTC-TCTGAC  945
      |||||| |||||||||||||| ||||||||||||||||  ||| ||||||
seq2  CTGTGGAAATGATTTTGTTCCTTTTCATCTCCTGCAAACTTTCTTCTGAC  950

seq1  TTTCACAACAC-AGCCTTTTCCCATTCACAATGCT--GTGCACCC--AAT  990
      ||||||||||| ||||||||||||||||| |||||   |||||||  |||
seq2  TTTCACAACACAAGCCTTTTCCCATTCAC-ATGCTTGTTGCACCCCAAAT  999

seq1  GTGTTCCCAAGTCA-CCTTTCTTCCTTCTCCTCC-TTCTCCTTTCCTCTT  1038
      ||| | |||||||| ||||||||||||| ||||| |||||  || ||| |
seq2  GTG-TACCAAGTCACCCTTTCTTCCTTCACCTCCGTTCTC--TTTCTC-T  1045

seq1  TCTCC  1043
      |||||
seq2  TCTCC  1050