BAC Information

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BAC

Clone NameB6Ng01-199D07
Chromosome6 (Build37)
Map Location 135,674,887 - 135,805,519
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneDusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199D07.bB6Ng01-199D07.g
ACCGA020599GA020600
length1,1521,178
definitionB6Ng01-199D07.b B6Ng01-199D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,804,387 - 135,805,519)(135,674,887 - 135,676,030)
sequence
gaattctgaagctgtatgttgaaaaaagaagaaggtgtcaatcagcaaat
tcggtacccaatgctggagtattgctgcgttttcactgagtttattggtt
ctaggaacacagctcctaagaagagccaatctgtcctcctttccattcac
gtggtgaaaaaggagttgaaacagaaagagatatcaaattataccaagat
ttggaaccctttaaggattggagtcttacattgcttccatcacgaaatga
caggggaagctggccttggagctggtcctgttaagctcgaattaatctca
aggcatgtgttgcacttggctgagcagacatacggagcttatttcagggc
agaggtgagatctggaatagatgccgaactcttggtgtgcggaggtgatg
agtgagcggctgtgtcttgagtgagccagagggagagttgtaggttcgac
attgagacttgggtactctcaaaacagagagtttcaataagaaagggacg
taaaaggagggaagtctggcctgaggtataaaaagaaaaccaagataata
ttttactttaagcagcaaatatgcaaagcaaatgtctacgggggaaattc
tcaccagcatcaagcaggagaaggtgagcaaggaacagaaggacagagca
acactgctctcatctaatttcctagaccttgttttgatgatcagtgactt
cgtgaaatatattggtagactagccagcagaggcaagagccaagacagaa
ggggttgaggagtagggtttgatgttgagaggcaggcaacaggtgtctat
ttatctttgcaaaaagtttttcagtaagtagagatgtccataataattac
cttttgagaggggttggaatatcactttgcaaaactgccccagtaaacaa
agagtttaatgggtataaatgcacagtaatttcagaagcatttaaaggag
cagttttccatgggaaacatcaacctacagaggggagaggagaagaactg
aagattccctctgacaaaagaaggaacagcaaagtttctaggccccacac
agtaacagcacagagatgattacatcgggtctctctatctacccggggag
aatgcagtaggggttcacgtgctgtcctctttaggcagccggccgggggg
at
gaattcactcagaaccatgaacgttataggagtcagaaagattttgagga
gttaagatagagagagtcaaccttagaatacacgccaagtcaaggttgag
cagaatcaggaagcagcaagctcaccgaggacctgagagctaagatgcac
atcagaatggaccacctcttgatgcttagctcaggttaatgtctacacat
gagcagcagagcaaaagaaagaccggtgggttttgtagcaagatgctcat
tgaaatattgctgttcggtgtttgtaggtgagtagcagattatagactca
ttgcaaagccgtgtctatgtggacaccaatgtccacattgggtgtggatg
taaagaaagactatccaattgagaaggccgggagagcaagaacaaacaga
gattaaaaatgggcattcaagaatctaatcaaacggagagaagatttgat
cctacagttggtttccaagttttgttttgagatgaatatagtcagctggg
tggaagggagtaaaaatgcaacatggagaagcctgaagtgtacctcaaga
aggtctcaagggcaggggttggtgcacagggatgaagagtgttcagctga
gaaactggcagagatgagtgaggaatttcaaggctgtgatctaagggaat
ctctgagaatttagctctagaatgggttgtaatcccagaagaagtgacga
gggcttggccttgatgtagaaatgttgaatctttgtggtattctttaaat
aacatgatggatatctttgacacaaaccctgacaccagtaaaatattaaa
cccttcatgtataatgagagggactttatgcacacctatttatatagaca
caatacatacatgtaaatagctaacattttgtgcatttgcacagccctgc
atggatcataacatactccatttttaaaaactttttatatgcttctcagc
aaccagcctcagggtcataataaaatgcttcaacaaaccattggccttat
tttaaagttacattttttatgctagactttttaaattggagtttctttct
tactaaccctttaaatccccaacctggtagaatgataataactgaaacaa
ataggagcctagggtttagaagcccatagtcctttaaaaataactgcttt
gtgacggaccttagatttggtaactctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135804387_135805519
seq2: B6Ng01-199D07.b_31_1182 (reverse)

seq1  ATCCCCCCGCCGCGCCTGCCT-AAGAGGACAGCACCGTGAACCCCAACTG  49
      ||||||||| | || |||||| |||||||||||| |||||||||| ||||
seq2  ATCCCCCCGGC-CGGCTGCCTAAAGAGGACAGCA-CGTGAACCCCTACTG  48

seq1  CA-TCTCCCCGGGGTAGAT-GAGAGAACCG-TGTAATCATCTCTGTTGCT  96
      || ||||||| |||||||| |||||| ||| |||||||||||||| ||||
seq2  CATTCTCCCC-GGGTAGATAGAGAGACCCGATGTAATCATCTCTG-TGCT  96

seq1  G-TACTGTGTGGGGGCTAG-AACTCTGCTGTTCCTTC-TTTGTC--AGGG  141
      | |||||||||||| |||| |||| |||||||||||| ||||||  ||||
seq2  GTTACTGTGTGGGGCCTAGAAACTTTGCTGTTCCTTCTTTTGTCAGAGGG  146

seq1  GATC-TCAGTTCT----CTCTCTCCCTCTGTAGGTTGATGTTT-CCATGG  185
       ||| ||||||||    ||||| |||||||||||||||||||| ||||||
seq2  AATCTTCAGTTCTTCTCCTCTC-CCCTCTGTAGGTTGATGTTTCCCATGG  195

seq1  AAACCTGCTC--TTTAATGCTTCTGAAATTACTGTGCATTTATA-CCATT  232
      ||| ||||||  || ||||||||||||||||||||||||||||| |||||
seq2  AAAACTGCTCCTTTAAATGCTTCTGAAATTACTGTGCATTTATACCCATT  245

seq1  -AACTCTTTGTTTACTGGGGCAG-TTTGCAAAGTGATATTCCAACCCCTC  280
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACTCTTTGTTTACTGGGGCAGTTTTGCAAAGTGATATTCCAACCCCTC  295

seq1  TC-AAAGGTAATTA-TATGGACATCTCTACTTACTG-AAAACTTTTTGCA  327
      || ||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TCAAAAGGTAATTATTATGGACATCTCTACTTACTGAAAAACTTTTTGCA  345

seq1  AAGAT-AATAGACACCTGTTGCCTGCCTCTCAACATCAAACCCTACTCCT  376
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATAGACACCTGTTGCCTGCCTCTCAACATCAAACCCTACTCCT  395

seq1  CAACCCCTTCTGTCTTGGCTCTTGCCTCTGCTGGCTAGTCTACCAATATA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTTCTGTCTTGGCTCTTGCCTCTGCTGGCTAGTCTACCAATATA  445

seq1  TTTCACGAAGTCACTGATCATCAAAACAAGGTCTAGGAAATTAGATGAGA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGAAGTCACTGATCATCAAAACAAGGTCTAGGAAATTAGATGAGA  495

seq1  GCAGTGTTGCTCTGTCCTTCTGTTCCTTGCTCACCTTCTCCTGCTTGATG  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTGCTCTGTCCTTCTGTTCCTTGCTCACCTTCTCCTGCTTGATG  545

seq1  CTGGTGAGAATTTCCCCCGTAGACATTTGCTTTGCATATTTGCTGCTTAA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGAATTTCCCCCGTAGACATTTGCTTTGCATATTTGCTGCTTAA  595

seq1  AGTAAAATATTATCTTGGTTTTCTTTTTATACCTCAGGCCAGACTTCCCT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATTATCTTGGTTTTCTTTTTATACCTCAGGCCAGACTTCCCT  645

seq1  CCTTTTACGTCCCTTTCTTATTGAAACTCTCTGTTTTGAGAGTACCCAAG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACGTCCCTTTCTTATTGAAACTCTCTGTTTTGAGAGTACCCAAG  695

seq1  TCTCAATGTCGAACCTACAACTCTCCCTCTGGCTCACTCAAGACACAGCC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTCGAACCTACAACTCTCCCTCTGGCTCACTCAAGACACAGCC  745

seq1  GCTCACTCATCACCTCCGCACACCAAGAGTTCGGCATCTATTCCAGATCT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCATCACCTCCGCACACCAAGAGTTCGGCATCTATTCCAGATCT  795

seq1  CACCTCTGCCCTGAAATAAGCTCCGTATGTCTGCTCAGCCAAGTGCAACA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCCCTGAAATAAGCTCCGTATGTCTGCTCAGCCAAGTGCAACA  845

seq1  CATGCCTTGAGATTAATTCGAGCTTAACAGGACCAGCTCCAAGGCCAGCT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGAGATTAATTCGAGCTTAACAGGACCAGCTCCAAGGCCAGCT  895

seq1  TCCCCTGTCATTTCGTGATGGAAGCAATGTAAGACTCCAATCCTTAAAGG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTCATTTCGTGATGGAAGCAATGTAAGACTCCAATCCTTAAAGG  945

seq1  GTTCCAAATCTTGGTATAATTTGATATCTCTTTCTGTTTCAACTCCTTTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAATCTTGGTATAATTTGATATCTCTTTCTGTTTCAACTCCTTTT  995

seq1  TCACCACGTGAATGGAAAGGAGGACAGATTGGCTCTTCTTAGGAGCTGTG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACGTGAATGGAAAGGAGGACAGATTGGCTCTTCTTAGGAGCTGTG  1045

seq1  TTCCTAGAACCAATAAACTCAGTGAAAACGCAGCAATACTCCAGCATTGG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAACCAATAAACTCAGTGAAAACGCAGCAATACTCCAGCATTGG  1095

seq1  GTACCGAATTTGCTGATTGACACCTTCTTCTTTTTTCAACATACAGCTTC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGAATTTGCTGATTGACACCTTCTTCTTTTTTCAACATACAGCTTC  1145

seq1  AGAATTC  1133
      |||||||
seq2  AGAATTC  1152

seq1: chr6_135674887_135676030
seq2: B6Ng01-199D07.g_65_1242

seq1  GAATTCACTCAGAACCATGAACGTTATAGGAGTCAGAAAGATTTTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGAACCATGAACGTTATAGGAGTCAGAAAGATTTTGAGGA  50

seq1  GTTAAGATAGAGAGAGTCAACCTTAGAATACACGCCAAGTCAAGGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATAGAGAGAGTCAACCTTAGAATACACGCCAAGTCAAGGTTGAG  100

seq1  CAGAATCAGGAAGCAGCAAGCTCACCGAGGACCTGAGAGCTAAGATGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGGAAGCAGCAAGCTCACCGAGGACCTGAGAGCTAAGATGCAC  150

seq1  ATCAGAATGGACCACCTCTTGATGCTTAGCTCAGGTTAATGTCTACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATGGACCACCTCTTGATGCTTAGCTCAGGTTAATGTCTACACAT  200

seq1  GAGCAGCAGAGCAAAAGAAAGACCGGTGGGTTTTGTAGCAAGATGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGAGCAAAAGAAAGACCGGTGGGTTTTGTAGCAAGATGCTCAT  250

seq1  TGAAATATTGCTGTTCGGTGTTTGTAGGTGAGTAGCAGATTATAGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTGCTGTTCGGTGTTTGTAGGTGAGTAGCAGATTATAGACTCA  300

seq1  TTGCAAAGCCGTGTCTATGTGGACACCAATGTCCACATTGGGTGTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGCCGTGTCTATGTGGACACCAATGTCCACATTGGGTGTGGATG  350

seq1  TAAAGAAAGACTATCCAATTGAGAAGGCCGGGAGAGCAAGAACAAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGACTATCCAATTGAGAAGGCCGGGAGAGCAAGAACAAACAGA  400

seq1  GATTAAAAATGGGCATTCAAGAATCTAATCAAACGGAGAGAAGATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAATGGGCATTCAAGAATCTAATCAAACGGAGAGAAGATTTGAT  450

seq1  CCTACAGTTGGTTTCCAAGTTTTGTTTTGAGATGAATATAGTCAGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGTTGGTTTCCAAGTTTTGTTTTGAGATGAATATAGTCAGCTGGG  500

seq1  TGGAAGGGAGTAAAAATGCAACATGGAGAAGCCTGAAGTGTACCTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGAGTAAAAATGCAACATGGAGAAGCCTGAAGTGTACCTCAAGA  550

seq1  AGGTCTCAAGGGCAGGGGTTGGTGCACAGGGATGAAGAGTGTTCAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAAGGGCAGGGGTTGGTGCACAGGGATGAAGAGTGTTCAGCTGA  600

seq1  GAAACTGGCAGAGATGAGTGAGGAATTTCAAGGCTGTGATCTAAGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGCAGAGATGAGTGAGGAATTTCAAGGCTGTGATCTAAGGGAAT  650

seq1  CTCTGAGAATTTAGCTCTAGAATGGGTTGTAATCCCAGAAGAAGTGACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAATTTAGCTCTAGAATGGGTTGTAATCCCAGAAGAAGTGACGA  700

seq1  GGGCTTGGCCTTGATGTAGAAATGTTGAATCTTTGTGGTATTC-TTAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGCTTGGCCTTGATGTAGAAATGTTGAATCTTTGTGGTATTCTTTAAAT  750

seq1  AACATGATGGATATCTTTGACACAAACCCTGACACCAG-AAAATATTAAA  798
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACATGATGGATATCTTTGACACAAACCCTGACACCAGTAAAATATTAAA  800

seq1  -CCTTCATGTATAATGAGA-GGACTTTATGCACACCTATTTATATAGACA  846
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTTCATGTATAATGAGAGGGACTTTATGCACACCTATTTATATAGACA  850

seq1  CAATACATACATGTAAATAGCTAACA-TTTGTGCATTTGCACAG-CCTGC  894
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  CAATACATACATGTAAATAGCTAACATTTTGTGCATTTGCACAGCCCTGC  900

seq1  AT-GAACATAACATACTCCA-TTTTAAAAAC-TTTTATATGCTTCTCAGC  941
      || || |||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATGGATCATAACATACTCCATTTTTAAAAACTTTTTATATGCTTCTCAGC  950

seq1  -ACCAG-CTCAGGGTCATAAT-AAATGC-TCAACAAA-CATTGG-CTTAT  985
       ||||| |||||||||||||| |||||| |||||||| |||||| |||||
seq2  AACCAGCCTCAGGGTCATAATAAAATGCTTCAACAAACCATTGGCCTTAT  1000

seq1  TTT-AAGTTACA-TATTTATGTAGGACTTTTTAA--TTGATTTTTTTCTT  1031
      ||| |||||||| | ||||||   ||||||||||  | || ||| ||  |
seq2  TTTAAAGTTACATTTTTTATGCTAGACTTTTTAAATTGGAGTTTCTTTCT  1050

seq1  TACT-ACCCTTTAAAT-CACAAC--TGTAAGATGATTATTAACTG--ACA  1075
      |||| ||||||||||| | ||||   |||  |||| || ||||||  |||
seq2  TACTAACCCTTTAAATCCCCAACCTGGTAGAATGA-TAATAACTGAAACA  1099

seq1  AATA-GAGCTCAGG--TTAGAAG-CCATA-TC--TTTAAAATAACAGTTT  1118
      |||| ||||  |||  ||||||| ||||| ||  || |||||||| | ||
seq2  AATAGGAGCCTAGGGTTTAGAAGCCCATAGTCCTTTAAAAATAACTGCTT  1149

seq1  TGTAATGGA-CTTAGATT--GTAACTCTG  1144
      ||| | ||| ||||||||  |||||||||
seq2  TGTGACGGACCTTAGATTTGGTAACTCTG  1178