BAC Information

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BAC

Clone NameB6Ng01-199P13
Chromosome6 (Build37)
Map Location 68,357,582 - 68,358,960
singlet/doubletsinglet
Overlap geneIgk
Upstream geneEG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408
Downstream geneGm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P13.bB6Ng01-199P13.g
ACCGA021161GA021162
length9581,197
definitionB6Ng01-199P13.b B6Ng01-199P13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttctacgatgcacactgatgtgaaagcatatgccaaatgaaca
tttttcttccaaactggctttttctcatactgtttcatcacagcaataat
taccctgaatgagacaaaaataaagccggatactactactactacaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaccaaa
aaaccatatgcagatcatgcaaaattgaaaatgcaaaaataaattcgcaa
agctactgtctctttctttccttttttttcaaagtaataaaaatatatct
aaaaaaatgcaaactcttctacaagcagtgcttaaaaaaaatgtatatcc
acaaaatgaaacaaaaagctggatctctatatgtcactaaatatgaaaat
tggctcaaatatctcaaatatatcaatgtaagtattgaaacaataattga
tagaggaaataagttcaaggggtctaaagatgctgaaaattaataatgtc
aacactattggggtttgcccaaagtgatgcaaatcataacataaaccacc
aagataggcagaaatataaacagtgttgccctagcttttcctcctggcac
ctatatgggttcataagtcttttcagatgtagtcaagctttgaagaactc
tcaggaatttagtagaagtgaccaagcaagtctttgttgctaacactgtt
attctcttttacctcagcggcataggaacagctcactattcttgattgat
tacatggaaaaagagtttcccaaactgtagtattttgggttgtatcatta
ttcagataacaaacagaagaaactatagacatgagatcagggaaactcaa
cacacattggggtttacattatagcaataccagctcatatgggtttgtct
gcagctctttgcctagaatatacagactcaacagtcatgaaatatggtag
cagcatgt
gaattcactgtgtatttattttcttagtagttttacaaccccaaatctaa
atacgtgtttgtagaagaggatagaaaactcagaagaagcaacttagtta
agatatcttttttagggttatgggctaatgctgagaaaatattcttataa
gccacagctgtcttgtcataggaaaacaaacaagagaacactgagcttca
tgtgaaccctaagtaaagaaactatagaaagtctctgagaaccaagttca
tctctaactatcttgattacattcagcattggtttccttcaacaggtata
aatcttaggagaattacgggaatacatgtggcataagtgttggtattaat
caggttttgtttgtttgcttgctttcctttgggtatacttcaaaattact
atccaataaactgaaattgctatctccttatttgccaacttaaaacaaaa
cgaaacaaaacaaacaaacaaaaaccttaccttctattctattatcctgc
agtatactggaatagctgccctcaatgtttgctgagaacaaaatgtttaa
atatataggggtctccattgttttgttttgttttgtttttaagcaaaatc
ctcaacaatctacttaccaaatgaaacctcaggagccagagactgtggtt
aaagcctgcttggtcagagacatagagaaagcgtccaactgaccttccta
attcaccaaattctaagaagagaaaaggtccttctccttcagtctccgag
atgtcttaaatacccttcagctaaatgtctcccctttctatttcctgtgt
tttctcatgctcactccctgtcaactggttgcctgtttcagatactgatc
tatggttgattttatttaattttgtttatagaaagctctttgggctaaaa
tgttgtatattagggctgagccatacccacatcaagaaaaaacttttcca
cctggtggctttcacatagtgatcaaacatttttaccacagtctctggtg
aattacagttgactagctaggagtaataatctaggggccaggaggtcatt
ttttcatttcacagaacctaagtaggccagtcttggttcacatgcaggag
tcttggcccatagtaggtttatttacggtaatgttcaagaaaggcacatt
gatgaaaatatcagctaggttaatgcttcatagagttccccctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68357582_68358960
seq2: B6Ng01-199P13.b_44_1001

seq1  GAATTCCTTCTACGATGCACACTGATGTGAAAGCATATGCCAAATGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTACGATGCACACTGATGTGAAAGCATATGCCAAATGAACA  50

seq1  TTTTTCTTCCAAACTGGCTTTTTCTCATACTGTTTCATCACAGCAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCAAACTGGCTTTTTCTCATACTGTTTCATCACAGCAATAAT  100

seq1  TACCCTGAATGAGACAAAAATAAAGCCGGATACTACTACTACTACAAAAA  150
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TACCCTGAATGAGACAAAAATAAAGCCGGATACTACTACTACTAC--AAA  148

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAACCA  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAACCA  198

seq1  AAAAACCATATGCAGATCATGCAAAATTGAAGATGCAAGAATAAATTCGC  250
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AAAAACCATATGCAGATCATGCAAAATTGAAAATGCAAAAATAAATTCGC  248

seq1  AAAGCTACTGTCTCTTTCTTTCCTTTTTTTTCAAAGTAATAAAAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACTGTCTCTTTCTTTCCTTTTTTTTCAAAGTAATAAAAATATAT  298

seq1  CTAAGAAAATGCAGACTCTTCTACAAGCAGTGCTTAAAAAAAATGTATAT  350
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAATGCAAACTCTTCTACAAGCAGTGCTTAAAAAAAATGTATAT  348

seq1  CCACAAAATGAAACAGAAAGCTGGATCTCTATATGTCACTAAATATGAAA  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACAAAATGAAACAAAAAGCTGGATCTCTATATGTCACTAAATATGAAA  398

seq1  ATTGGCTCAAATATCTCAAATATATCAATGTAAGTATTGAAACAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTCAAATATCTCAAATATATCAATGTAAGTATTGAAACAATAATT  448

seq1  GATAGAGGAAATAAGTTCAAGGGGTCTAAAGATGCTGAGAATTAATAATG  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATAGAGGAAATAAGTTCAAGGGGTCTAAAGATGCTGAAAATTAATAATG  498

seq1  TCAACACTATTGGGGTTTGCCCAAAGTGATGCAAATCATAACATAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTATTGGGGTTTGCCCAAAGTGATGCAAATCATAACATAAACCA  548

seq1  CCAAGATAGGCAGAAATATAAACAGTGTTGCCCTAGCTTTTCCTCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGGCAGAAATATAAACAGTGTTGCCCTAGCTTTTCCTCCTGGC  598

seq1  ACCTATATGGGTTCATAAGTCTTTTCAGATGTAGTCAAGCTTTGAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATGGGTTCATAAGTCTTTTCAGATGTAGTCAAGCTTTGAAGAAC  648

seq1  TCTCAGG-ATTTAGTAGAAGTGACCAAGCAAGTCTTTGTTGCTAACACTG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGAATTTAGTAGAAGTGACCAAGCAAGTCTTTGTTGCTAACACTG  698

seq1  TTATTCTCTTTTACCTCAGCGGCATAGGAACAGCTCACTATTCTTGATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTTTTACCTCAGCGGCATAGGAACAGCTCACTATTCTTGATTG  748

seq1  ATTACATGGAAAAAGAGTTTCCCAAACTGTAGTATTTTGGGTTGTATCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGGAAAAAGAGTTTCCCAAACTGTAGTATTTTGGGTTGTATCAT  798

seq1  TATTCAGATAACAAAACAGAAGAAACTATAGACATGAGAATCAGGGAAAC  849
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TATTCAGATAAC-AAACAGAAGAAACTATAGACATGAG-ATCAGGGAAAC  846

seq1  TCAACACACATTGGGGTTTACATTATAGCAAATAACCAGCTCATTAATGG  899
      |||||||||||||||||||||||||||||||   ||||||||||  ||||
seq2  TCAACACACATTGGGGTTTACATTATAGCAA--TACCAGCTCAT--ATGG  892

seq1  GTTTGTCTGCAGCTCTTTGCCTAG-ATATACAGACTCAACAGTCAATGAA  948
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  GTTTGTCTGCAGCTCTTTGCCTAGAATATACAGACTCAACAGTC-ATGAA  941

seq1  ATTATGGGTTAGCCAGCCATGTATTCCTGAGACCTGGCCCGGTAGATAAG  998
      | |||||  ||| ||| |||||                            
seq2  A-TATGG--TAG-CAG-CATGT----------------------------  958

seq1  GGTGGGGATGCTGATACTGCCATCTAACTGAAACAATACTAATACTGATT  1048
                                                        
seq2  --------------------------------------------------  958

seq1  ATATAGTGATTATATAATTGATTGATGTGAAGGTTCTGGTGGATTTTCAA  1098
                                                        
seq2  --------------------------------------------------  958

seq1  ATCTATTTGTAGGACAAATTCTATAAGAAACAGTTATTTTCATTCATATA  1148
                                                        
seq2  --------------------------------------------------  958

seq1  TATATACATATATATATATGAATATATGTATTTCATAAAATAGTAATTTT  1198
                                                        
seq2  --------------------------------------------------  958

seq1  AAAAACACAAGGTCATGACTATGATAGGCAGCAGGGAATTGGGATTGGTA  1248
                                                        
seq2  --------------------------------------------------  958

seq1  AGAGAGTTTTGAAGGTGAAAATGGCAGAAAGATGTTTTGTAATGAAAGTA  1298
                                                        
seq2  --------------------------------------------------  958

seq1  CAATATAAAAAACAAAATTACAATCTAAGATACAAAACGGATTATTTATA  1348
                                                        
seq2  --------------------------------------------------  958

seq1  AAAATTAGTGCAGCCTTTACAAGCAGCATGT  1379
                                     
seq2  -------------------------------  958