BAC Information

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BAC

Clone NameB6Ng01-200G11
Chromosome6 (Build37)
Map Location 76,412,381 - 76,413,637
singlet/doubletsinglet
Overlap geneLOC668153
Upstream geneEG668145, EG546907, LOC100042952
Downstream geneEG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200G11.bB6Ng01-200G11.g
ACCGA021474GA021475
length1,2431,148
definitionB6Ng01-200G11.b B6Ng01-200G11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatctttaatggctgaaaaaacacttaaagatat
gttcaatatccttagtcatctgggaactgcaaatcaaaactactctgaga
tcccatctcatacccatcagaatagctaagataaaaaaattcaagaaaca
gtgactgttggcaaggatgtggagtgaagggaacactcctccattgttgg
tgggagtgcaaacttaaccactttggaaatcaatttggctacatctcaga
aaagtgggaatagttctacctcaagacccagctatatcatttctggacgt
atacccaaaagatgctccaccattccacaaggattcttcttcaactttgt
acttagcagctttattcataataagtgagaaattgaacacaaccaagatg
tccctcaaccgaagaatggatatatcaaatgtgatacatttatacaatgg
agtattaatcagctattaaaaacaagggcatcatgaaacttgcaggcaaa
tgggtgaattagaacatatcttcttgaatgaggtaacccagacccttaaa
gaaacacatgatatttagtcaactataagtgtatattagccatatagtgc
aagataatgagcctacaatccacagacccaaagaatataaatagcaagga
aaaccaaagcaggatacttgaatctcaataagaaggggaaataaaataga
catatgggtggatggatggagcaaactgaatggaagaggtgatggaaagt
gtaacgggagaaaacaagtgtgaggaggactaggagagagagaaatgaaa
tcttaaggtgggggcatctctggaatgaactagaaaccaaggacaatgga
aacgtccacaaatctatgaggattatccttgctaagcctcccagcaaata
gggtctatgaaacttgaaatgactaacttcctatacctaatcaggactac
caatggaggcatgtaggcatcatcccagccaccaagtcttgtacccacca
gtttgtgcctctaccaagatgtgcaagaagttagagaagaaaactgagga
aatagcctacccaatgacttgccctactggaaacacgttgcttatgaaag
aagaacataactccataacattatttaacaatatttttgcctatactgca
gaatggagctctagcctacctacatctgaaagcctccatgcagcagcctt
atggcaaccgaatgacagagtacctactactgatgcccacacg

gaattccatttacttttctccactaaccagaaaagtagaagtttattagg
aggtagaaggctgattgcttgcacggatgactgagaacctggaaatccac
tgccatcctctgcatgctttgtacaagcaagaaattaatctttgttgttt
taagcctctgatgtttggagagtatttcttactactacaaaatcctgaac
aacacctctgtgtatacttgtattgaggctgaaattagagatgtcttaaa
ttagttgttaaaattaatctgccttaggcttaaggagcccttttcttgaa
catttataaagactgtctgaggcttttattgtttgtagaatacattactt
atagatgctgaatcaaaacaatctgttaccatcattgaaagcttagttca
aatcttaggtcagtggtgtctcaatgtaggctgttcaattcttctgagct
acctcttaagagatcttttacaaatagtgctaataaacatgttatcaagt
gaacatttttcaaatgtgtagtagttttttatttcctgtcttttaatatt
taacaggaatgagaagtataaaaatgtgattaattcaacataagcctggc
catttccatttgacaactttgcacacataaactgattatcttggctctca
aagtagaaaataaatgttgaaagattctctttggttatgggatactgggt
tggaaaggacctttttttttataatttagttatttattttatggtgtttt
ctcaattgtgtgagtttagtttgctttattgctttgtttatttggtatag
tttgggttctgaagcaggctatcactggatagacaagactgcactacaaa
ctttttagtgggctaattcctgagtccagggcagaaatacaggtgcactg
atgagacacgttacagaaattctttcagtaatatgtgtaaatcacatgtg
ctttgctttaactaaagaatggtgatttttagtgtcataatttctttata
agggagtttttcttttcctttatatggggtaaaatagtatcatttctact
tttttttggttttatttcagaaatgatatcagcatcaattacttactagt
taaattttggtggtttggtcttcctggtaatcaaaggtcactggtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76412381_76413637
seq2: B6Ng01-200G11.g_66_1213

seq1  GAATTCCATTTACTTTTCTCCACTAACCAGAAAAGTAGAAGTTTATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACTTTTCTCCACTAACCAGAAAAGTAGAAGTTTATTAGG  50

seq1  AGGTAGAAGGCTGATTGCTTGCACGGATGACTGAGAACCTGGAAATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAGGCTGATTGCTTGCACGGATGACTGAGAACCTGGAAATCCAC  100

seq1  TGCCATCCTCTGCATGCTTTGTACAAGCAAGAAATTAATCTTTGTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTCTGCATGCTTTGTACAAGCAAGAAATTAATCTTTGTTGTTT  150

seq1  TAAGCCTCTGATGTTTGGAGAGTATTTCTTACTACTACAAAATCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCTGATGTTTGGAGAGTATTTCTTACTACTACAAAATCCTGAAC  200

seq1  AACACCTCTGTGTATACTTGTATTGAGGCTGAAATTAGAGATGTCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCTGTGTATACTTGTATTGAGGCTGAAATTAGAGATGTCTTAAA  250

seq1  TTAGTTGTTAAAATTAATCTGCCTTAGGCTTAAGGAGCCCTTTTCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTAAAATTAATCTGCCTTAGGCTTAAGGAGCCCTTTTCTTGAA  300

seq1  CATTTATAAAGACTGTCTGAGGCTTTTATTGTTTGTAGAATACATTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAAGACTGTCTGAGGCTTTTATTGTTTGTAGAATACATTACTT  350

seq1  ATAGATGCTGAATCAAAACAATCTGTTACCATCATTGAAAGCTTAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCTGAATCAAAACAATCTGTTACCATCATTGAAAGCTTAGTTCA  400

seq1  AATCTTAGGTCAGTGGTGTCTCAATGTAGGCTGTTCAATTCTTCTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGGTCAGTGGTGTCTCAATGTAGGCTGTTCAATTCTTCTGAGCT  450

seq1  ACCTCTTAAGAGATCTTTTACAAATAGTGCTAATAAACATGTTATCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAAGAGATCTTTTACAAATAGTGCTAATAAACATGTTATCAAGT  500

seq1  GAACATTTTTCAAATGTGTAGTAGTTTTTTATTTCCTGTCTTTTAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTCAAATGTGTAGTAGTTTTTTATTTCCTGTCTTTTAATATT  550

seq1  TAACAGGAATGAGAAGTATAAAAATGTGATTAATTCAACATAAGCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAATGAGAAGTATAAAAATGTGATTAATTCAACATAAGCCTGGC  600

seq1  CATTTCCATTTGACAACTTTGCACACATAAACTGATTATCTTGGCTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTTGACAACTTTGCACACATAAACTGATTATCTTGGCTCTCA  650

seq1  AAGTAGAAAATAAATGTTGAAAGATTCTCTTTGGTTATGGGATACTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAATAAATGTTGAAAGATTCTCTTTGGTTATGGGATACTGGGT  700

seq1  TGGAAAGGACCTTTTTTTTTATAATTTAGTTATTTATTTTATGGTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGACCTTTTTTTTTATAATTTAGTTATTTATTTTATGGTGTTTT  750

seq1  CTCAATTGTGTGAGTTTAGTTTGCTTTATTGCTTTGTTTATTTGGTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGTGTGAGTTTAGTTTGCTTTATTGCTTTGTTTATTTGGTATAG  800

seq1  TTTGGGTTCTGAAGCAGGCTATCACTGGATAGACAAGACTGCACTACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCTGAAGCAGGCTATCACTGGATAGACAAGACTGCACTACAAA  850

seq1  C-TTTTAGTGGGCTAA-TCCTGAGTCCAGGGCAGAAATACAGGTGCACTG  898
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTGGGCTAATTCCTGAGTCCAGGGCAGAAATACAGGTGCACTG  900

seq1  ATGAGACACG-TACAGAAAT--CTTCAGTAATATGTGTAAATCACATGTG  945
      |||||||||| |||||||||   |||||||||||||||||||||||||||
seq2  ATGAGACACGTTACAGAAATTCTTTCAGTAATATGTGTAAATCACATGTG  950

seq1  C-TTGC-TTAACT-AAGAATGGTGATTTTTAGTGTCAATATTTC-TTATA  991
      | |||| |||||| |||||||||||||||||||||||  ||||| |||||
seq2  CTTTGCTTTAACTAAAGAATGGTGATTTTTAGTGTCATAATTTCTTTATA  1000

seq1  AGGGAGTTTT--TTTTCTTTTATAT-GGTTTAAATAGTATTCATTTCTAC  1038
      ||||||||||  ||||| ||||||| || | |||||||| ||||||||||
seq2  AGGGAGTTTTTCTTTTCCTTTATATGGGGTAAAATAGTA-TCATTTCTAC  1049

seq1  TTTTTT----GTTTATTTCAGA----ATATCAGGCCATTCAATAC-TATT  1079
      ||||||     |||||||||||    |||||||  |||  | ||| || |
seq2  TTTTTTTTGGTTTTATTTCAGAAATGATATCAG--CATCAATTACTTACT  1097

seq1  AGTCATATTT--GTGGTTGGGTCTTCCTG--TATCAAAGTTCACTGAAAA  1125
      ||| | ||||  |||||| ||||||||||   ||||||| ||||||  ||
seq2  AGTTAAATTTTGGTGGTTTGGTCTTCCTGGTAATCAAAGGTCACTGGTAA  1147

seq1  CACTCTCACAAAAGTATCCAGATTCTATATGTCTTGGGGGATTCTAAACC  1175
                                                        
seq2  G-------------------------------------------------  1148

seq1  CAGTCAAGTTGACATTGAAGACTAATAATCACACTCTTGTATATTTGAGA  1225
                                                        
seq2  --------------------------------------------------  1148

seq1  AACAACATTTATTTTGAAAGGTCACTGTTAAG  1257
                                      
seq2  --------------------------------  1148


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